SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6352

Length: 2342 nt

UniGene Fasta

>sp_v3.0_unigene6352
CGTCGTGACCTTGGCTGTCACTCATTTTGGAAAAGCATGGTATTGCAGAGCATGTGGAGCGAGTGAATGCATTGAGAGTCCACTAGGTAGTGTAGTGAGTGGAAGATTGGCGTGACGGAATGGGCGTGAAGAAGAGGTAATACCGATCTCAATCAGTCAAGCGGAACCGGTAATGAAGGCGGAATGCATGCGTACAAGTAGTGCATACAGCAGAGTGTCGAGCAGCAGTAGTATCAGCAGTAGCTGTTGCAGTCCTAGGAGTTCCCCTTCACCTCCCTCCTCCCCCAGAAGACCATCGCCCAAACCGAGACATGGGCGGAGCAGCAACAGCAGCACCAAAACTTGTATCAAGAGTAACCGTATGCAGGGCGCGGGAGGAGAAGCCACATTGCCATTGCCACCTGCTAAATGTATGCACAAGTTTCTCTGCCTGCTGCTTTCTCTGCTGCTGAAGCGCCACGGAGTCTTCCTTTTTGCTCCGCTCATATACATCTCTGGCATGCTATTTTACATGGGCACCATGTCTTTTGAGGTGCCTGGAGTGGCTATGCACCCCACTCCTGGATTGGTATACCGCAGCCCACAACTGTTTAAAAGACTCTGGCTTGGAATGAACTCCGATAACGACACTTCTTCTGATGGGCTTATGGCAGCATGGCAGCACCCAAGGGAGGGAGAGGAATGGATACCTTGTATCAGTCATACATTGAGTGGAGGATTGCCACATTCAAATGGTTACATACTTATTGAAGCAAATGGTGGTCTCAATCAACAGCGCACATCGATTTGTAATGCAGTAGCTGTGGCAGGCCTTTTGAATGCAACTCTTGTTATCCCCAAATTTCATTTTAACAGTATTTGGCAAGATCCTAGCAACTTTGGAGACATTTATGATGAGGGGCATTTTATCAAAAGTCTTAGAAACGATGTGAGGGTGGTTAGAGAGCTCCCAGAAGATATAATGGCAACGTTTGACTACAATACAAGCAATATTTTTAATTTCAGGGTTAAGGCTTGGTCACCTGTCAGTTACTACTTGCAAAAGGTTCTTCCAAGATTACTTGATATTGGGGTGATACGGATATCTCCATTTGCAAATAGACTGTCATCTGAAGTCCCGCCCAATATTCAGCGCCTCCGATGTTTGGCTAATTACGAAGCATTAAAATTTTCTGTGCCCATTACTTCACTTGCAGAAAAGCTAGTAAAACGCATGATTGGGGCAAGCTCCAGAAGTAATGGAAAGTATATTGCAGTTCATCTTCGATTTGAAGAGGACATGGTAGCTTTTTCATGCTGTGTTTATGATGGAGGTGAGGCAGAAAAACTTGAAATGGATGTTGCACGTGAAAGAGGTTGGAGGGGAAAATTCAATAGAAAGGGCAGGATCATTAGGCCTGGCATGATCAGGAAGGATGGGAAATGCCCTCTCACTCCCTTAGAGGTTGGCATGATGCTTAGGGGTATGGGCTTTAATAATAATACCTCAATATTTTTAGCATCTGGAAAAATATACAAGGCGGAGAAAAACATGGCACCACTGCAACAAATGTTTCCTCTCTTACAAACAAAAGAAACACTTGCATCTTCAGAGGAACTTGCTCCTTTTGAGGGTTACTCATCAAGGATGGCTGCATTAGACTATACTGTTTGCCTGCATAGTGAAGTGTTTGTTACAACACAAGGAGGAAATTTTCCTCATTTTTTGATGGGCCACAGGAGATACCTTTATAAAGGACATGCCAAAACAATCAAGCCAAACAAACGCAAGTTAGCATTGCTTTTTGATCATCCAAAGATAAGATGGGAGACTTTCAAGCGACAGATGCAAGCCATGCGTCGCCACAATGATGTTAAAGGAATTGAACTCAGAAAGGTCAACGGTTCAGTATATACATTCCCCATGCCAGATTGTATGTCCCGTCAAAATTCGGGGAAACTCAGAAGCCCAAACATTGTGCATTGAATGTAGGTTTGAGAAGCCGGGAATTTCTTATCACATTCCTGAATTTTCATCTAACGGTGCCTAGGGAGACATCGTCCTGTAATCTACCATACATCATGCTACATTGATTTTTTGAATTTTCTACAATTTTAGTTCAATTGGATTGTGTTCAATCCATATCCATCGTGTATTCCTCCACATTTAGTGGAAGAAGTTGTAGGGCACATTGGCTCTATGGTTATTATTACTTCGCCAGAAGAAGTTCAACATAATTAAATGAAATCGTTGTTTGGTTCTACTGTTGAAAACATTAATCAAGGATAATGGAACGAAATGCTGTTGTATTTGATTGTACAGATTTAATGAAATAGGACTCAATTACATTTTCAAGTGTACT

Ace file of the UniGene sp_v3.0_unigene6352

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	O-fucosyltransferase family protein [Arabidopsis thaliana] gb\|AAC67324.1\| similar to axi 1 protein from Nicotiana tabacum [Arabidopsis thaliana] gb\|AAM13108.1\| similar to axi 1 protein [Arabidopsis thaliana] gb\|AAM91218.1\| similar to axi 1 protein [Arabid	-	-	0.0	62%
FL-Next	tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya).	-	-	0.0	67%
Sma3	Putative auxin-independent growth promoter	-	-	5.134e-16	-

Source	Gene names
Sma3	AT4g16650; AT4g24530; At1g14020; At1g29200; At1g35510; At1g38065; At1g38131; At1g76270; At2g01480; At4g16650; At5g65470; F12K8.19; F15M4.23; F22K18.270; GSVIVT00002377001; GSVIVT00015333001; GSVIVT00015568001; GSVIVT00030505001; GSVIVT00030748001; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	FAS1 domain	IPR000782	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	SKP1 component	IPR001232	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3		IPR004348	-	-
Sma3	Putative harbinger transposase-derived nuclease	IPR006912	-	-
Sma3	Rhamnogalacturonate lyase	IPR010325	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	SKP1 component, dimerisation	IPR016072	-	-
Sma3	SKP1 component, POZ	IPR016073	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G01480.1	O-fucosyltransferase family protein chr2:216980-220341 FORWARD LENGTH=567	63%
RefSeq	Arabidopsis thaliana	NP_178257.1	O-fucosyltransferase family protein [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002325978.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: I1HT95

Fln msg:

Fln protein: MKAECMRTSSAYSRVSSSSSISSSCCSPRSSPSPPSSPRRPSPKPRHGRSSNSSTKTCIKSNRMQGAGGEATLPLPPAKCMHKFLCLLLSLLLKRHGVFLFAPLIYISGMLFYMGTMSFEVPGVAMHPTPGLVYRSPQLFKRLWLGMNSDNDTSSDGLMAAWQHPREGEEWIPCISHTLSGGLPHSNGYILIEANGGLNQQRTSICNAVAVAGLLNATLVIPKFHFNSIWQDPSNFGDIYDEGHFIKSLRNDVRVVRELPEDIMATFDYNTSNIFNFRVKAWSPVSYYLQKVLPRLLDIGVIRISPFANRLSSEVPPNIQRLRCLANYEALKFSVPITSLAEKLVKRMIGASSRSNGKYIAVHLRFEEDMVAFSCCVYDGGEAEKLEMDVARERGWRGKFNRKGRIIRPGMIRKDGKCPLTPLEVGMMLRGMGFNNNTSIFLASGKIYKAEKNMAPLQQMFPLLQTKETLASSEELAPFEGYSSRMAALDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYKGHAKTIKPNKRKLALLFDHPKIRWETFKRQMQAMRRHNDVKGIELRKVNGSVYTFPMPDCMSRQNSGKLRSPNIVH*

Protein Length: 599

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTGGAAAAGCATGGTATTGCAGAGCATGTGGAGCGAGTGAATGCATTGAGAGTCCACTAGGTAGTGTAGTGAGTGGAAGATTGGCGTGACGGAATGGGCGTGAAGAAGAGGTAATACCGATCTCAATCAGTCAAGCGGAACCGGTA_-_ATGAAGGCGGAATGCATGCGTACAAGTAGTGCATACAGCAGAGTGTCGAGCAGCAGTAGTATCAGCAGTAGCTGTTGCAGTCCTAGGAGTTCCCCTTCACCTCCCTCCTCCCCCAGAAGACCATCGCCCAAACCGAGACATGGGCGGAGCAGCAACAGCAGCACCAAAACTTGTATCAAGAGTAACCGTATGCAGGGCGCGGGAGGAGAAGCCACATTGCCATTGCCACCTGCTAAATGTATGCACAAGTTTCTCTGCCTGCTGCTTTCTCTGCTGCTGAAGCGCCACGGAGTCTTCCTTTTTGCTCCGCTCATATACATCTCTGGCATGCTATTTTACATGGGCACCATGTCTTTTGAGGTGCCTGGAGTGGCTATGCACCCCACTCCTGGATTGGTATACCGCAGCCCACAACTGTTTAAAAGACTCTGGCTTGGAATGAACTCCGATAACGACACTTCTTCTGATGGGCTTATGGCAGCATGGCAGCACCCAAGGGAGGGAGAGGAATGGATACCTTGTATCAGTCATACATTGAGTGGAGGATTGCCACATTCAAATGGTTACATACTTATTGAAGCAAATGGTGGTCTCAATCAACAGCGCACATCGATTTGTAATGCAGTAGCTGTGGCAGGCCTTTTGAATGCAACTCTTGTTATCCCCAAATTTCATTTTAACAGTATTTGGCAAGATCCTAGCAACTTTGGAGACATTTATGATGAGGGGCATTTTATCAAAAGTCTTAGAAACGATGTGAGGGTGGTTAGAGAGCTCCCAGAAGATATAATGGCAACGTTTGACTACAATACAAGCAATATTTTTAATTTCAGGGTTAAGGCTTGGTCACCTGTCAGTTACTACTTGCAAAAGGTTCTTCCAAGATTACTTGATATTGGGGTGATACGGATATCTCCATTTGCAAATAGACTGTCATCTGAAGTCCCGCCCAATATTCAGCGCCTCCGATGTTTGGCTAATTACGAAGCATTAAAATTTTCTGTGCCCATTACTTCACTTGCAGAAAAGCTAGTAAAACGCATGATTGGGGCAAGCTCCAGAAGTAATGGAAAGTATATTGCAGTTCATCTTCGATTTGAAGAGGACATGGTAGCTTTTTCATGCTGTGTTTATGATGGAGGTGAGGCAGAAAAACTTGAAATGGATGTTGCACGTGAAAGAGGTTGGAGGGGAAAATTCAATAGAAAGGGCAGGATCATTAGGCCTGGCATGATCAGGAAGGATGGGAAATGCCCTCTCACTCCCTTAGAGGTTGGCATGATGCTTAGGGGTATGGGCTTTAATAATAATACCTCAATATTTTTAGCATCTGGAAAAATATACAAGGCGGAGAAAAACATGGCACCACTGCAACAAATGTTTCCTCTCTTACAAACAAAAGAAACACTTGCATCTTCAGAGGAACTTGCTCCTTTTGAGGGTTACTCATCAAGGATGGCTGCATTAGACTATACTGTTTGCCTGCATAGTGAAGTGTTTGTTACAACACAAGGAGGAAATTTTCCTCATTTTTTGATGGGCCACAGGAGATACCTTTATAAAGGACATGCCAAAACAATCAAGCCAAACAAACGCAAGTTAGCATTGCTTTTTGATCATCCAAAGATAAGATGGGAGACTTTCAAGCGACAGATGCAAGCCATGCGTCGCCACAATGATGTTAAAGGAATTGAACTCAGAAAGGTCAACGGTTCAGTATATACATTCCCCATGCCAGATTGTATGTCCCGTCAAAATTCGGGGAAACTCAGAAGCCCAAACATTGTGCATTGA___ATGTAGGTTTGAGAAGCCGGGAATTTCTTATCACATTCCTGAATTTTCATCTAACGGTGCCTAGGGAGACATCGTCCTGTAATCTACCATACATCATGCTACATTGATTTTTTGAATTTTCTACAATTTTAGTTCAATTGGATTGTGTTCAATCCATATCCATCGTGTATTCCTCCACATTTAGTGGAAGAAGTTGTAGGGCACATTGGCTCTATGGTTATTATTACTTCGCCAGAAGAAGTTCAACATAATTAAATGAAATCGTTGTTTGGTTCTACTGTTGAAAACATTAATCAAGGATAATGGAACGAAATGCTGTTGTATTTGATTGTACAGATTTAATGAAATAGGACTCAATTACATTTTCAAGTGTACT

Fln Alignment:

Contig6352___KRHGVFLFAPLIYISGMLFYMGTMSFE-VPGVAMHPTPGLVYRSPQLFKRLWLGMNSDNDTSSDGLMAAWQHPREGEEWIPCISHTLSGGLPHSNGYILIEANGGLNQQRTSICNAVAVAGLLNATLVIPKFHFNSIWQDPSNFGDIYDEGHFIKSLRNDVRVVRELPEDIMATFDYNTSNIFNFRVKAWSPVSYYLQKVLPRLLDIGVIRISPFANRLSSEVPPNIQRLRCLANYEALKFSVPITSLAEKLVKRMIGASSRSNGKYIAVHLRFEEDMVAFSCCVYDGGEAEKLEMDVARERGWRGKFNRKGRIIRPGMIRKDGKCPLTPLEVGMMLRGMGFNNNTSIFLASGKIYKAEKNMAPLQQMFPLLQTKETLASSEELAPFEGYSSRMAALDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYKGHAKTIKPNKRKLALLFDHPKIRWETFKRQMQAMRRHNDVKGIELRKVNGSVYTFPMPDCMSRQNSGK
I1HT95______________RRQAVFLFAPLLYVAAMLLYMGSISLDSVPRIISRPAPGSLYRSPQLYARLRADMDADNAT--DALATVWRHAYKGGVWRPCIRNN-TYDLPEPNGYIYVEANGGLNQQRTSICNAVAVAGFLNATLIIPNFHYHSIWRDPSKFSDIYDENHFVQHLKNDVRVVDKVPEFIMERFSHNLSNVFNFKIKAWSPIQYYKDVVLPKLIEERLIRISPFANRLSFDAPPAVQRLRCLANFEALKFSKPITTLSDTLVSRMREKSAENNGKYVAVHLRFEEDMVAFSCCVFDGGDEEKKELDVARERGWRGKFTRPGRVIRPGAIRMNGKCPLTPLEVGLMLRGMGFSNNTSIYLASGRIYKAEKNMVPLLEMFPLLQTKETLASDEELAPFKNFSSRMAAIDYSVCVHSEVFVTTQGGNFPHFLVGHRRYMYGGHSKTIKPDKRRLAILFDSPRIGWKSLKRQLLNMRSHSDAKGIEMKRANESIYTFPCPDCMCRSNKSE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
2079	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain