SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6348

Length: 2062 nt

UniGene Fasta

>sp_v3.0_unigene6348
TTTCAAGAAGCTTTCTTTCGAAATGGCGATCTCAAAATATGCAGCAGTGATGTCGTGCTTGTTCATCGCAGTTGTTGCATTAAACGTTGAGGCAAAAACGAGAAATTACAAATTTGACATAAAATTCAAGAACGTTACTCGTTTATGCCACACAAAGCCGATCGTTACAGCGAATGGCAAGTTTCCAGGCCCAACAATATATGCACGAGAAGGAGACACAGTCACTGTGAAAGTAACCAATCACGTGACATACAACGTGTCCATACATTGGCACGGGATAAGGCAGTTGCGGACTGGGTGGGCTGATGGGCCTGCTTATATTACGCAGTGCCCCATTCAAACAGGCCAAACTTTTGTATATAACTTTACAATCACAGGCCAGCGAGGCACACTTTTCTGGCACGCTCACATTCTCTGGTTACGTGCAACATTGTATGGGCCCATCGTCATTCTACCCAAAAAGGGGGTGCCGTACCCCTTCCCGGCGCCTGATAAAGAGGTTATATTGATTCTAGGTGAATGGTGGAATTCCGACACCGAGACCGTCATTAACCAAGCGATGAATTCAGGATCAGCACCGAATAGTTCGGATGCCCACACGATAAATGGGAAGCCGGGGCCACTCTTCTTTTGTCCTACTAAAGATACTTTTGCGTTATCAGTGGAGCCAGACAAGACATACCTGCTCAGAATCATCAACGCTGCGCTCAATCAGGAAGTCTTCTTCGGCGTGGCAAATCATCATCTGACAGTGGTGGAGGTCGACGCAGTGTACACAAAACCCTTCGAGACAAAGGCTATAGTAATTGCTCCAGGACAGACCACCAATGCTTTGCTCCACGCAGGCAAAAAAGCTGGAAGGTATTTCATGGCCGCCCGAGTATTCATGGACGCACCCATAACCGTAGATAACAAGACGGCAACGGCCATATTGCAATACACAGGAAGCTCAAACTCTCTGAACCCCGTATTGCCTCTAATTCCTGCGCTCAATGATACCGCGTTCTCATCTAATTTTAGCAACGCTCTGAAAAGTCTAAATTCTCCCCAGTATCCTGCTAAAGTTCCCCAATCAATAGATCGCAATCTCTTCTTTACTGTTGGGCTAGCCCTAAATTCGTGCCCAACCTGCAACAACGGTTCGCGCCCTGCTGCATCTGTGAACAATATAAGCTTCACTATGCCCACCGTTGCTCTTCTTCAATCACACTACTTCAACATCAGTGGCGTCTTCACTACCGATTTCCCAGATAATCCCCCTGCAACTTTTAACTACACTGGCACACCGCCAAAGAATATGCAATCCTCAAATGGAACCAGACTTAGCCGCATACCCTTCAATTCCACAGTGCAGTTGGTGCTTCAGGACACAAGCATGCTGACAGTGGAGAACCATCCAGTCCATCTACATGGCTTCAATTTCTTCATTGTTGGAAGAGGGTTTGGGAACTATGATCCTAAGAAGGACCCTGCCAAATTCAATCTTGTGGATCCTCCTGAGCGCAACACTGTCGGCGTGCCCACTGGTGGCTGGACGGTTATCCGGTTCAGAGCCGACAATCCAGGTGTCTGGTTCATGCATTGTCATCTGGAAGTACACACCACCTGGGGGCTAAAGATGGCATTTTTGGTAGAGAACGGGCACGGTACGGAACAATCGATTCTGCCTCCCCCAAAAGACCTGCCCAAGTGCTAGTCATACATTCTGAAATTCTTCATGAATATTGTTAATAACTTTCGAATTGTTATGACATCTCTTAAATAATTAACTGTGTTCTCGACATCACGAACATACTGATTTTCCTTGTAGCAGCAACACCAGTGGATTTCTCTGGAGATTTTGTGATGTCGTTCAAAATGTTTGTGTGAGAATCGCCATACTCCAAAAAATTTCAATAAGTTTGGTCTCCGACGGTTGGATTTGTTTAATAGATCATTGTATTAGATATGTAACTTTACATCAATTTGTAAAGCTTGACGATTATTGTCGAACTGTTAATATTACATGTTGCAAGGAAATTTCTTCTTTTATCCTCCAATTGTCAATTTTGGAGCTCTTTTA

Ace file of the UniGene sp_v3.0_unigene6348

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Laccase n=1 Tax=Pinus taeda RepID=Q9AUI0_PINTA	-	-	94%
FL-Next	tr=Laccase; Pinus taeda (Loblolly pine).	-	-	94%
Sma3	Laccase	-	-	-

Source	Gene names
Sma3	Lac7;

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	laccase activity	GO:0008471	Molecular Function	-
Sma3	lignin catabolic process	GO:0046274	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Laccase	IPR017761	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G03260.1	LAC11 laccase 11 chr5:777198-779338 REVERSE LENGTH=557	66%
RefSeq	Arabidopsis thaliana	NP_195946.2	laccase 11 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002322962.1	laccase 1b [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9AUI0

Fln msg:

Fln protein: MAISKYAAVMSCLFIAVVALNVEAKTRNYKFDIKFKNVTRLCHTKPIVTANGKFPGPTIYAREGDTVTVKVTNHVTYNVSIHWHGIRQLRTGWADGPAYITQCPIQTGQTFVYNFTITGQRGTLFWHAHILWLRATLYGPIVILPKKGVPYPFPAPDKEVILILGEWWNSDTETVINQAMNSGSAPNSSDAHTINGKPGPLFFCPTKDTFALSVEPDKTYLLRIINAALNQEVFFGVANHHLTVVEVDAVYTKPFETKAIVIAPGQTTNALLHAGKKAGRYFMAARVFMDAPITVDNKTATAILQYTGSSNSLNPVLPLIPALNDTAFSSNFSNALKSLNSPQYPAKVPQSIDRNLFFTVGLALNSCPTCNNGSRPAASVNNISFTMPTVALLQSHYFNISGVFTTDFPDNPPATFNYTGTPPKNMQSSNGTRLSRIPFNSTVQLVLQDTSMLTVENHPVHLHGFNFFIVGRGFGNYDPKKDPAKFNLVDPPERNTVGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLVENGHGTEQSILPPPKDLPKC*

Protein Length: 559

Fln nts: TTTCAAGAAGCTTTCTTTCGAA_-_ATGGCGATCTCAAAATATGCAGCAGTGATGTCGTGCTTGTTCATCGCAGTTGTTGCATTAAACGTTGAGGCAAAAACGAGAAATTACAAATTTGACATAAAATTCAAGAACGTTACTCGTTTATGCCACACAAAGCCGATCGTTACAGCGAATGGCAAGTTTCCAGGCCCAACAATATATGCACGAGAAGGAGACACAGTCACTGTGAAAGTAACCAATCACGTGACATACAACGTGTCCATACATTGGCACGGGATAAGGCAGTTGCGGACTGGGTGGGCTGATGGGCCTGCTTATATTACGCAGTGCCCCATTCAAACAGGCCAAACTTTTGTATATAACTTTACAATCACAGGCCAGCGAGGCACACTTTTCTGGCACGCTCACATTCTCTGGTTACGTGCAACATTGTATGGGCCCATCGTCATTCTACCCAAAAAGGGGGTGCCGTACCCCTTCCCGGCGCCTGATAAAGAGGTTATATTGATTCTAGGTGAATGGTGGAATTCCGACACCGAGACCGTCATTAACCAAGCGATGAATTCAGGATCAGCACCGAATAGTTCGGATGCCCACACGATAAATGGGAAGCCGGGGCCACTCTTCTTTTGTCCTACTAAAGATACTTTTGCGTTATCAGTGGAGCCAGACAAGACATACCTGCTCAGAATCATCAACGCTGCGCTCAATCAGGAAGTCTTCTTCGGCGTGGCAAATCATCATCTGACAGTGGTGGAGGTCGACGCAGTGTACACAAAACCCTTCGAGACAAAGGCTATAGTAATTGCTCCAGGACAGACCACCAATGCTTTGCTCCACGCAGGCAAAAAAGCTGGAAGGTATTTCATGGCCGCCCGAGTATTCATGGACGCACCCATAACCGTAGATAACAAGACGGCAACGGCCATATTGCAATACACAGGAAGCTCAAACTCTCTGAACCCCGTATTGCCTCTAATTCCTGCGCTCAATGATACCGCGTTCTCATCTAATTTTAGCAACGCTCTGAAAAGTCTAAATTCTCCCCAGTATCCTGCTAAAGTTCCCCAATCAATAGATCGCAATCTCTTCTTTACTGTTGGGCTAGCCCTAAATTCGTGCCCAACCTGCAACAACGGTTCGCGCCCTGCTGCATCTGTGAACAATATAAGCTTCACTATGCCCACCGTTGCTCTTCTTCAATCACACTACTTCAACATCAGTGGCGTCTTCACTACCGATTTCCCAGATAATCCCCCTGCAACTTTTAACTACACTGGCACACCGCCAAAGAATATGCAATCCTCAAATGGAACCAGACTTAGCCGCATACCCTTCAATTCCACAGTGCAGTTGGTGCTTCAGGACACAAGCATGCTGACAGTGGAGAACCATCCAGTCCATCTACATGGCTTCAATTTCTTCATTGTTGGAAGAGGGTTTGGGAACTATGATCCTAAGAAGGACCCTGCCAAATTCAATCTTGTGGATCCTCCTGAGCGCAACACTGTCGGCGTGCCCACTGGTGGCTGGACGGTTATCCGGTTCAGAGCCGACAATCCAGGTGTCTGGTTCATGCATTGTCATCTGGAAGTACACACCACCTGGGGGCTAAAGATGGCATTTTTGGTAGAGAACGGGCACGGTACGGAACAATCGATTCTGCCTCCCCCAAAAGACCTGCCCAAGTGCTAG___TCATACATTCTGAAATTCTTCATGAATATTGTTAATAACTTTCGAATTGTTATGACATCTCTTAAATAATTAACTGTGTTCTCGACATCACGAACATACTGATTTTCCTTGTAGCAGCAACACCAGTGGATTTCTCTGGAGATTTTGTGATGTCGTTCAAAATGTTTGTGTGAGAATCGCCATACTCCAAAAAATTTCAATAAGTTTGGTCTCCGACGGTTGGATTTGTTTAATAGATCATTGTATTAGATATGTAACTTTACATCAATTTGTAAAGCTTGACGATTATTGTCGAACTGTTAATATTACATGTTGCAAGGAAATTTCTTCTTTTATCCTCCAATTGTCAATTTTGGAGCTCTTTTA

Fln Alignment:

Contig6348___MAISKYAAVMSCLFIAVVALNVEAKTRNYKFDIKFKNVTRLCHTKPIVTANGKFPGPTIYAREGDTVTVKVTNHVTYNVSIHWHGIRQLRTGWADGPAYITQCPIQTGQTFVYNFTITGQRGTLFWHAHILWLRATLYGPIVILPKKGVPYPFPAPDKEVILILGEWWNSDTETVINQAMNSGSAPNSSDAHTINGKPGPLFFCPTKDTFALSVEPDKTYLLRIINAALNQEVFFGVANHHLTVVEVDAVYTKPFETKAIVIAPGQTTNALLHAGKKAGRYFMAARVFMDAPITVDNKTATAILQYTGSSNSLNPVLPLIPALNDTAFSSNFSNALKSLNSPQYPAKVPQSIDRNLFFTVGLALNSCPTCNNGSRPAASVNNISFTMPTVALLQSHYFNISGVFTTDFPDNPPATFNYTGTPPKNMQSSNGTRLSRIPFNSTVQLVLQDTSMLTVENHPVHLHGFNFFIVGRGFGNYDPKKDPAKFNLVDPPERNTVGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLVENGHGTEQSILPPPKDLPKC
Q9AUI0______________MVISKYAAAMSCLLIAVVALNVEAETRHYKFDIKFKNVTRLCHTEPIVTANGKFPGPTIHAREGDTVTVKVTNHVTYNVSIHWHGIRQLRTGWADGPAYITQCPIQTGQTFVYNFTITGQRGTLFWHAHILWLRATLYGPIVILPPKG-PYPFPKPHKEVILILGEWWNSDTETVINQAMNSGLAPNSSDSHTINGKAGPLFYCPTKDTFALSVEPDKTYLLRIIKA-LNQEVFFGVANHHLTVVEVDAVYTKPFETKAIVSAPGQTTNALLHTDKKAGRYFMAARVFMDAPIAVDNKTATAILQYTGSSNSLNPVMPLIPALNDTAFSSNFSNALKSLNSPQYPAKVPQSIDRNLFFTVGLALNACPTCINGARPAASVNNISFTMPTIALLQSHYFNISGVFTTDFPDNPPATFNYTGTPPKNLQSSNGTRLSRIPFNSTVQLVLQDTSALTVENHPVHLHGFNFFIVGRGFGNYNPKKDPAKFNLVDPPERNTVGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLVENGHGPEQSILPPGKDLPQC

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
485	25		75		0.996473
668		85		14	0.993533
1100	10		90		0.90298
1160		30	70		1.0
1287		87		12	0.992554
1292	87		12		0.992554
1293	87			12	0.992554
1295	87			12	0.992554
1297			12	87	0.992554
1298	87			12	0.992554
1522		88		11	0.999952
1606		90	10		0.90298
1608		12	75		0.975346
1610			85	14	0.993533
1611		14	85		0.993533
1613		85		14	0.993533
1649	16	83			0.994512
1673		80		20	0.995493
1909	14	85			0.993533
2039	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain