SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6347

Length: 2516 nt

UniGene Fasta

>sp_v3.0_unigene6347
GACATTGCGAAAGGAACTTAAGTCATCAAAAATTCTGGGACTTCACCCAGAGTGCCTTGTAGATTCATGGATTGGTAAAGAAAGGTGGGCATTTCTTGATTTGACTGCAGGTCCTTTTTCATGGGGTCCAACAGTTGGTGGTGAAGGTGTCCGCACAGGGATTAGCTTACCTAATGTAGAGAAGACCATTGGAGCCGTTGTAGAGATTACTGAGGAGGAAGCCGAGGATAAATTGCAAAGCGTGATTCAAGAGAAATTTTCACTTTTTGGAGATGATCATCATGCAGTTGATGTGCTTTTAGCAGAGATGGATATCTATGAGCTTTTTGTATTCAGACATTGTAAAGGAAGAAGGGTCAAGCTTGTACTCTGTGAAGAACTTGAGGAGAGGATGCGTGATATGAAAAGTGAAATGGAGACTTTTCAGGGCGAGGAGCATGAAGAAATCCACAGGAGGAAGGCAGCTGAGGCAATTAAACGAATGGAACAATGGAACCTGTTTGCAGATGCATATGAGGATACACAGAATTACACGGTTGCACGGGATTCATTTCTTTCTCACCTGGGTGCCACTTTATGGGGGTCTATGAAACACATTGTTGCACCTTCTAGTGCTGAAGGAGCATTTCATTATTATGAAAAGATATCATATCAGCTATTTTTCATCACTCAGGAGAAAGTAAAACATATGGATTTGTTGCCGATAGAACTGAATACTGTCAGGCAGGGCCTAGTCTCCCTTATTGTACCTGGTCAGAAGGTTGAGTTTCATCCTCACATGCTGGCACTTTCAGAAGATCCTGCTTTAGCAATGGCATTCTCGGTTGCACGACGTGCAGCCACTGTCCCAGTTTTACTTGTGAATGGAACATATAAAACATCTGTTCGAAGCTATCTTGATTCCTTTATTCTACAGCATCAGCTGCGAAGGCTAAGTGGAGGTGATTTGCTTAGAGGGGGACATTTTAAAAGTCGTTCTACTCTAGAAGTTCCAGTGTTCTGGTTTATACAAGAAGGAGATCCCCTTCTTATAGATAAACATTACCAAGCAAAGGCACTTCTGGATATGGTTATTGTTGTGCAGTCAAGTCAATCTGATTGGGAGAGCCATTTGCAATGTAATGGTCAATCCATATTATGGGATTTGAGGAATCCTTTAAAAGCAGGGCTAGCAGCAGCTGCTGAACATCTAGCTGGCCTAGTGCCACTTCATTTGACTTATAGCCATGCTCATGAAAATGCAATCCAAGATTGGCTTTGGTCTTTCGGGTGCAATCCTTTTGCAAGCACCTCATCAGGGTGGCATACATCACTCTTTCAATCTGATACAATAGCACGGAATTACATTGTAACAAGTCTTGAAGAGTCAGTTCAACTTGTGAATTCTGCCATTGATCTTTTGATCACGGAGCGGACTAATGAACTTTCATTTAAGGTTTTCAAAGCTCAGGAGCACTCATTGGTTGTCAGTTACAATTCAGTTGTTAGCCTTTGGAGACAAATTGCAGGAGCAGTGGGAGATATGCGTTATGGAGACTCAATGAGGTCACTTTCAATGCTTGAAGAGGCATCCCAACGTTTTCTGGAGACAACAAATGCTACACTTGCTGCCTTGCACCCTATTCATTGTACACGTCAACGACAAGTGGAAGTACAGTTTGATATATCAACTTTATTGGGGTTCATAGTTGTGGCAGCTATACTATTGTTCCTGTTGAGACCAAGACGCCCCAAACCAAAGATCAATTGAAGTAGGTTGTCTTCCATTTACTGCGAATGCACTGTACAATACAAAAGCAGAGTTGTTACTTCATGGCAGCCATTTATCATGCAGCCATGACTCTAGTTTTGCTCATTTAATGTCAAGCGTTTCAGTTACTTTTAATAACTTATTGCCATTATTGAATGGAATGTGGAAGAACTACTGTGAGGAGCCTTTTGGTCAGCAGCAATATTTACAATTTTCAAAATAATTAAAGATCACAAAGAATATATGTATCGATGTCTCCAGAGTTGTCTTTTCCATGTCTTAGAGGATGTTTCAAATGCATAGTTATTATGGTATTCAACACTTGGCATTTTGCAAATCCATGGCTAACATACTTCTGTTGTATGAGCAAATTGGAATTCATTGTGACAATCTCAGTAGCAAGTCCTTGTGATGTTTCTAGAAGATATCAATTATTGTTTCTAATCACTATCCAGAAATGTTTTGGGGATGAGCAGATGGTCTCTCCTTTTTCTAATCGGAGTAAGCGGGAAAGAACTATGCCTCTGTGCATTTGCTAATAACAAATCTAGTTAATACCGAGAGTATATACTTGAGGAATCGACATATGTCACATTCTAGTGATCAGACTACACATTTAAAAGCACACTAAAGGTACTTATTGTAAGCAACACTTAAACTCGATGGTATCCTTAGAGGTTTGTGATCTTCATGTACCTTTATATTCAACTACCAATGTAAGACTCAACATTTTAAATATCGGATTTACTTTGTGTTTAGGCCTTAC

Ace file of the UniGene sp_v3.0_unigene6347

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	66%

Source	Gene names
Sma3	GSVIVT00033781001; LOC_Os03g37320; OJ1057_F01.24; OSJNBb0015I21.1; OSJNBb0015I21.2; Os02g0469200; Os03g0570200; OsI_07162; OsJ_06679; OsJ_11494; PHYPADRAFT_206630; POPTRDRAFT_274215; POPTRDRAFT_560714; RCOM_0589300; VITISV_003324;

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G58100.1	" unknown protein; INVOLVED IN: pollen exine formation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 35333 Blast hits to 34131 proteins in 2444	65%
RefSeq	Arabidopsis thaliana	NP_200618.3	uncharacterized protein [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002331424.1	predicted protein, partial [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6I3D0

Fln msg: your sequence is shorter than subject: 583 - 941

Fln protein: TLRKELKSSKILGLHPECLVDSWIGKERWAFLDLTAGPFSWGPTVGGEGVRTGISLPNVEKTIGAVVEITEEEAEDKLQSVIQEKFSLFGDDHHAVDVLLAEMDIYELFVFRHCKGRRVKLVLCEELEERMRDMKSEMETFQGEEHEEIHRRKAAEAIKRMEQWNLFADAYEDTQNYTVARDSFLSHLGATLWGSMKHIVAPSSAEGAFHYYEKISYQLFFITQEKVKHMDLLPIELNTVRQGLVSLIVPGQKVEFHPHMLALSEDPALAMAFSVARRAATVPVLLVNGTYKTSVRSYLDSFILQHQLRRLSGGDLLRGGHFKSRSTLEVPVFWFIQEGDPLLIDKHYQAKALLDMVIVVQSSQSDWESHLQCNGQSILWDLRNPLKAGLAAAAEHLAGLVPLHLTYSHAHENAIQDWLWSFGCNPFASTSSGWHTSLFQSDTIARNYIVTSLEESVQLVNSAIDLLITERTNELSFKVFKAQEHSLVVSYNSVVSLWRQIAGAVGDMRYGDSMRSLSMLEEASQRFLETTNATLAALHPIHCTRQRQVEVQFDISTLLGFIVVAAILLFLLRPRRPKPKIN*

Protein Length: 584

Fln nts: GACATTGCGAAAGGAACTTAAGTCATCAAAAATTCTGGGACTTCACCCAGAGTGCCTTGTAGATTCATGGATTGGTAAAGAAAGGTGGGCATTTCTTGATTTGACTGCAGGTCCTTTTTCATGGGGTCCAACAGTTGGTGGTGAAGGTGTCCGCACAGGGATTAGCTTACCTAATGTAGAGAAGACCATTGGAGCCGTTGTAGAGATTACTGAGGAGGAAGCCGAGGATAAATTGCAAAGCGTGATTCAAGAGAAATTTTCACTTTTTGGAGATGATCATCATGCAGTTGATGTGCTTTTAGCAGAGATGGATATCTATGAGCTTTTTGTATTCAGACATTGTAAAGGAAGAAGGGTCAAGCTTGTACTCTGTGAAGAACTTGAGGAGAGGATGCGTGATATGAAAAGTGAAATGGAGACTTTTCAGGGCGAGGAGCATGAAGAAATCCACAGGAGGAAGGCAGCTGAGGCAATTAAACGAATGGAACAATGGAACCTGTTTGCAGATGCATATGAGGATACACAGAATTACACGGTTGCACGGGATTCATTTCTTTCTCACCTGGGTGCCACTTTATGGGGGTCTATGAAACACATTGTTGCACCTTCTAGTGCTGAAGGAGCATTTCATTATTATGAAAAGATATCATATCAGCTATTTTTCATCACTCAGGAGAAAGTAAAACATATGGATTTGTTGCCGATAGAACTGAATACTGTCAGGCAGGGCCTAGTCTCCCTTATTGTACCTGGTCAGAAGGTTGAGTTTCATCCTCACATGCTGGCACTTTCAGAAGATCCTGCTTTAGCAATGGCATTCTCGGTTGCACGACGTGCAGCCACTGTCCCAGTTTTACTTGTGAATGGAACATATAAAACATCTGTTCGAAGCTATCTTGATTCCTTTATTCTACAGCATCAGCTGCGAAGGCTAAGTGGAGGTGATTTGCTTAGAGGGGGACATTTTAAAAGTCGTTCTACTCTAGAAGTTCCAGTGTTCTGGTTTATACAAGAAGGAGATCCCCTTCTTATAGATAAACATTACCAAGCAAAGGCACTTCTGGATATGGTTATTGTTGTGCAGTCAAGTCAATCTGATTGGGAGAGCCATTTGCAATGTAATGGTCAATCCATATTATGGGATTTGAGGAATCCTTTAAAAGCAGGGCTAGCAGCAGCTGCTGAACATCTAGCTGGCCTAGTGCCACTTCATTTGACTTATAGCCATGCTCATGAAAATGCAATCCAAGATTGGCTTTGGTCTTTCGGGTGCAATCCTTTTGCAAGCACCTCATCAGGGTGGCATACATCACTCTTTCAATCTGATACAATAGCACGGAATTACATTGTAACAAGTCTTGAAGAGTCAGTTCAACTTGTGAATTCTGCCATTGATCTTTTGATCACGGAGCGGACTAATGAACTTTCATTTAAGGTTTTCAAAGCTCAGGAGCACTCATTGGTTGTCAGTTACAATTCAGTTGTTAGCCTTTGGAGACAAATTGCAGGAGCAGTGGGAGATATGCGTTATGGAGACTCAATGAGGTCACTTTCAATGCTTGAAGAGGCATCCCAACGTTTTCTGGAGACAACAAATGCTACACTTGCTGCCTTGCACCCTATTCATTGTACACGTCAACGACAAGTGGAAGTACAGTTTGATATATCAACTTTATTGGGGTTCATAGTTGTGGCAGCTATACTATTGTTCCTGTTGAGACCAAGACGCCCCAAACCAAAGATCAATTGA___AGTAGGTTGTCTTCCATTTACTGCGAATGCACTGTACAATACAAAAGCAGAGTTGTTACTTCATGGCAGCCATTTATCATGCAGCCATGACTCTAGTTTTGCTCATTTAATGTCAAGCGTTTCAGTTACTTTTAATAACTTATTGCCATTATTGAATGGAATGTGGAAGAACTACTGTGAGGAGCCTTTTGGTCAGCAGCAATATTTACAATTTTCAAAATAATTAAAGATCACAAAGAATATATGTATCGATGTCTCCAGAGTTGTCTTTTCCATGTCTTAGAGGATGTTTCAAATGCATAGTTATTATGGTATTCAACACTTGGCATTTTGCAAATCCATGGCTAACATACTTCTGTTGTATGAGCAAATTGGAATTCATTGTGACAATCTCAGTAGCAAGTCCTTGTGATGTTTCTAGAAGATATCAATTATTGTTTCTAATCACTATCCAGAAATGTTTTGGGGATGAGCAGATGGTCTCTCCTTTTTCTAATCGGAGTAAGCGGGAAAGAACTATGCCTCTGTGCATTTGCTAATAACAAATCTAGTTAATACCGAGAGTATATACTTGAGGAATCGACATATGTCACATTCTAGTGATCAGACTACACATTTAAAAGCACACTAAAGGTACTTATTGTAAGCAACACTTAAACTCGATGGTATCCTTAGAGGTTTGTGATCTTCATGTACCTTTATATTCAACTACCAATGTAAGACTCAACATTTTAAATATCGGATTTACTTTGTGTTTAGGCCTTAC

Fln Alignment:

Contig6347___KELKSSKILGLHPECLVDSWIGKERWAFLDLTAGPFSWGPTVGGEGVRTGISLPNVEKTIGAVVEITEEEAEDKLQSVIQEKFSLFGD-DHHAVDVLLAEMDIYELFVFRHCKGRRVKLVLCEELEERMRDMKSEMETFQGEEHEEIHRRKAAEAIKRMEQWNLFADAYEDTQNYTVARDSFLSHLGATLWGSMKHIVAPSSAEGAFHYYEKISYQLFFITQEKVKHMDLLPIELNTVRQGLVSLIVPGQKVEFHPHMLALSEDPALAMAFSVARRAATVPVLLVNGTYKTSVRSYLDSFILQHQXXXXXXXXXXXXXHFKSRSTLEVPVFWFIQEGDPLLIDKHYQAKALLDMVIVVQSSQSDWESHLQCNGQSILWDLRNPXXXXXXXXXXXXXXXVPLHLTYSHAHENAIQDWLWSFGCNPFASTSSGWHTSLFQSDTIARNYIVTSLEESVQLVNSAIDLLITERTNELSFKVFKAQEHXXXXXXXXXXXXWRQIAGAVGDMRYGDSMRSLSMLEEASQRFLETTNATLAALHPIHCTRQRQVEVQFDISTLLGFIVVAAI
F6I3D0______________KELKSGDLSGIHAECLTDTWIGKDRWAFIDLSAGPFSWGPAVGGEGVRTELSLPNVKKTIGAVAEISEDEAEDRLQDAIQEKFAAFGDKDHQAIDILLAEIDIYELFAFKHCKGRKVKLALCEELDERMRDLKNELQSFEGGEYDESHRRKAVDALNRMESWNLFSDTHEEFQNYTVARDTFLAHLGATLWGSMRHIISPSIADGAFHFYDKISFQLFFITQEKVRHIKQLPVDLKALTEGLSSLLLPSQKAMFSQHMLPLSEDPALAMAFSVARRAAAVPLLLVNGTYRKTIRTYLDSSILQHQLQRLNDHGSLKGMHAHSRSTLEVPIFWFL-HSEPLLVDKHYQAKALSDMVIVVQSETSSWESHLQCNGKSLLWDLRRPIKAALAAASEHLAGLLPLHLVYSQAHETAIEDWAWSVGCNPLSITSQGWHISQFQSDTVARSYIITTLEESIQLVNSAIHRLVMEHTTEQTFKLFQSQERDLVNKYNHVVGLWRRIATVTGELRYVDAMRLLYTLEDASKGFVGQVNASITLLHPIHCTRQRKVDVEFDMTTIPAFLIVLGV

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
696		25		75	0.996473
719		16		83	0.994512
1438	12			75	0.975346
1439		12		87	0.992554
1886	81			18	0.999994
1906	87		12		0.992554
1963		16		83	0.994512
2074	14			85	0.993533
2078		87	12		0.992554
2079	87		12		0.992554
2081		12		87	0.992554
2082			12	87	0.992554
2085	12	87			0.992554
2086	87	12			0.992554
2087	87	12			0.992554
2088	87			12	0.992554
2090		87	12		0.992554
2091		87	12		0.992554
2092	87	12			0.992554
2095			87	12	0.992554
2097	12			87	0.992554
2098	87	12			0.992554
2099	87			12	0.992554
2282	83			16	0.994512
2320		16		83	0.994512
2321	83		16		0.994512
2475		33		66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain