SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6346

Length: 1991 nt

UniGene Fasta

>sp_v3.0_unigene6346
CATATCAGAAGTAACGAGACACACGCGGTAAGTCACTCTCAAGCCTGCTGGACCACGATGCCAAAACAAAAGTCTTCTAACACGCGATTCCTACCTCTTCCAAGTCTGAAGAAACAATGGATTGGAGCGTAGAATATGCGACAGCATCAATAGCGCTGGCTTTGTTGGTGATACTATATTTCAAAATGAAATGCAGTGGTGACCTGTGCCATCCTGTGGCTGCAACCGTTGTTTCTCACATCATCAATTTCAAACGCATACATGACTATCTTTGTGATCATCACAGACGCTACAAAACTTACAGGATATCTTATCCTACTTTCAGCTACGTTTATACCACGGATCCTGCAAATGTGGAGCACATTCTTAGAAAAAATTTTGCAAACTACGTCAAGGGAAAGTTCAACCATGATATTATGGAAGACCTGCTCGGGGATGGCATTTTCAGCGTTGATGGTGAGCAGTGGCGACAACAGCGAAAATTAGCTAGTTTTGAGTTCTCTACCAAAATGTTGAAGGACTTCAGCAGTGTTGCTTTCCGAGAGAATGTAGTGAAACTTTCCAAAATTCTTTTGGAAGCTTCTGGAGCAAAGCAAGCAGTAGAAATGCAGGGTCTTTTACTGAAATCAACAATGGATGCAATCTGCAAACTGGGCTTTGGGGTGGAAATCAACAGCTTATCAAAGGCCAACTCTGGAGCAGAGGCATCTTTTGCAGAGGCTTTTGATACTGCAAATGCTATGCTTTTGTGGCGTTATGTTGATCTTTCTTGGAAATTAAAACGATACTTCAATATTGGGTCAGAAGTCACCATGAAGGAAAGCATCAAAACAGTGGATGATTTTGTCTACAAGGTCATTCAGAAGAGAAGAAAGGAGATTTCCGTCCAAAATAACTATGTAAAACCAGATATATTGTCTCGCTTTATTGCATTGAGTGAGAAACACCCAGAGAATTGCTCGGACAAGTATCTCCGAGATATTATTCTGAATTTCATGATAGCTGGCCGGGACACAACAGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAAAATCCAGATGTTGAAGGAAAAATTCTGCAAGAAATTTGTGGCCTGGTCAAGGAAAATGAATGTATATCAATTGAAGAATCTATAAGTATGTTTTCTCAAAGTCTGACGCAATCAGTATTGGATAACATGCACTATCTTCAAGCAGCTTTATCAGAAGCCTTGCGCCTACACCCAGCTGTTCCTGTGGATGGAAAATATGTAGTTTCTGATGACATCCTTCCCGATGGATTCAAAGTCAAGAAAGGTGATATAATCAATTATGTCCCTTACTCAATGGGAAGAATGACATACCTCTGGGGCAGTGATGCAGAGGAGTTTAGGCCAGAGAGGTGGCTTCAGAATGGAGTTTTTACGCCTCAATCACCATTCAAATTCACTGCATTTCAGGCTGGACCTCGCATTTGTCTTGGCAAGGACTTTGCATACATGCAAATGAAGATTTTTGCTGCTGTGCTTGTACGTTTCTTCAAATTTGAAGCTGTTGAAGGTAAGGAAGTGAAATATCGTCCCTCACTGACACTCCATATGACTGAAGATGGATTAAATCTTCGTGTCAAGCCTAGATTAGATTGCTGAGCACAGTTTTACTTCACAATAAGGTACAGCAATACACAGAAAGCTTTTATCCGTTGTACATAAGTATTTTAAGATATTCTGATTTTGTCTAGTTGAAGGCATCTGTTATTTTGAGTCATACCACAATATCAAAACCCCCTTGGGTGATGAAAACATTGTTTGAATAGAAAATGTTGAAGGAGCCAGACAAGTAGAACACACTAGGCACAGTCTACAGAACAGTGCTTCACAATATAAGTTATATCATCTTATGTATTCATAGGTGCCCATCTGTGGCATCAATTCCCTGTTTTTCTAATAAGAACTTTATCTTATTCTTTTGAATAAATGTTTAATAAAATAATAAAGAATTACTGG

Ace file of the UniGene sp_v3.0_unigene6346

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450 704C1 n=1 Tax=Pinus taeda RepID=C04C1_PINTA	-	-	0.0	59%
FL-Next	sp=Cytochrome P450 704C1; Pinus taeda (Loblolly pine).	-	-	0.0	59%
Sma3	Cytochrome P450	-	-	8.728e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Unspecific monooxygenase.	EC:1.14.14.1	-	3.188e-11	-

Source	KEGGs	Term	e value	Identity
Sma3	Fatty acid metabolism	00071	3.188e-11	%
Sma3	Steroid hormone biosynthesis	00140	3.188e-11	%
Sma3	Caffeine metabolism	00232	3.188e-11	%
Sma3	Tryptophan metabolism	00380	3.188e-11	%
Sma3	Arachidonic acid metabolism	00590	3.188e-11	%
Sma3	Linoleic acid metabolism	00591	3.188e-11	%
Sma3	Aminobenzoate degradation	00627	3.188e-11	%
Sma3	Retinol metabolism	00830	3.188e-11	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980	3.188e-11	%
Sma3	Drug metabolism - cytochrome P450	00982	3.188e-11	%
Sma3	Drug metabolism - other enzymes	00983	3.188e-11	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	3.188e-11	%
Sma3	Metabolic pathways	01100	3.188e-11	%

Source	Gene names
Sma3	At1g69500; At1g69500/F10D13_15; At2g44890; At2g45510; At5g08250; At5g23190; CYP704A10; CYP704A11; CYP704A14; CYP704B3; CYP704C1; CYP704G7; CYP704G9; CYP86A22; CYP86B4; CYP86B5; CYP86C5v1; CYP86C6; CYP94A1; CYP94D23v1; CYP94D23v2; F10D13_15; GSVIVT00023301

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1 complex, OSCP/delta subunit	IPR000711	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G45510.1	CYP704A2 cytochrome P450, family 704, subfamily A, polypeptide 2 chr2:18753085-18754944 FORWARD LENGTH=511	51%
RefSeq	Arabidopsis thaliana	NP_182075.1	cytochrome P450, family 704, subfamily A, polypeptide 2 [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002320074.1	cytochrome P450 [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q50EK3

Fln msg:

Fln protein: MDWSVEYATASIALALLVILYFKMKCSGDLCHPVAATVVSHIINFKRIHDYLCDHHRRYKTYRISYPTFSYVYTTDPANVEHILRKNFANYVKGKFNHDIMEDLLGDGIFSVDGEQWRQQRKLASFEFSTKMLKDFSSVAFRENVVKLSKILLEASGAKQAVEMQGLLLKSTMDAICKLGFGVEINSLSKANSGAEASFAEAFDTANAMLLWRYVDLSWKLKRYFNIGSEVTMKESIKTVDDFVYKVIQKRRKEISVQNNYVKPDILSRFIALSEKHPENCSDKYLRDIILNFMIAGRDTTAVTLCWFFHLLCKNPDVEGKILQEICGLVKENECISIEESISMFSQSLTQSVLDNMHYLQAALSEALRLHPAVPVDGKYVVSDDILPDGFKVKKGDIINYVPYSMGRMTYLWGSDAEEFRPERWLQNGVFTPQSPFKFTAFQAGPRICLGKDFAYMQMKIFAAVLVRFFKFEAVEGKEVKYRPSLTLHMTEDGLNLRVKPRLDC*

Protein Length: 507

Fln nts: CATATCAGAAGTAACGAGACACACGCGGTAAGTCACTCTCAAGCCTGCTGGACCACGATGCCAAAACAAAAGTCTTCTAACACGCGATTCCTACCTCTTCCAAGTCTGAAGAAACA_-_ATGGATTGGAGCGTAGAATATGCGACAGCATCAATAGCGCTGGCTTTGTTGGTGATACTATATTTCAAAATGAAATGCAGTGGTGACCTGTGCCATCCTGTGGCTGCAACCGTTGTTTCTCACATCATCAATTTCAAACGCATACATGACTATCTTTGTGATCATCACAGACGCTACAAAACTTACAGGATATCTTATCCTACTTTCAGCTACGTTTATACCACGGATCCTGCAAATGTGGAGCACATTCTTAGAAAAAATTTTGCAAACTACGTCAAGGGAAAGTTCAACCATGATATTATGGAAGACCTGCTCGGGGATGGCATTTTCAGCGTTGATGGTGAGCAGTGGCGACAACAGCGAAAATTAGCTAGTTTTGAGTTCTCTACCAAAATGTTGAAGGACTTCAGCAGTGTTGCTTTCCGAGAGAATGTAGTGAAACTTTCCAAAATTCTTTTGGAAGCTTCTGGAGCAAAGCAAGCAGTAGAAATGCAGGGTCTTTTACTGAAATCAACAATGGATGCAATCTGCAAACTGGGCTTTGGGGTGGAAATCAACAGCTTATCAAAGGCCAACTCTGGAGCAGAGGCATCTTTTGCAGAGGCTTTTGATACTGCAAATGCTATGCTTTTGTGGCGTTATGTTGATCTTTCTTGGAAATTAAAACGATACTTCAATATTGGGTCAGAAGTCACCATGAAGGAAAGCATCAAAACAGTGGATGATTTTGTCTACAAGGTCATTCAGAAGAGAAGAAAGGAGATTTCCGTCCAAAATAACTATGTAAAACCAGATATATTGTCTCGCTTTATTGCATTGAGTGAGAAACACCCAGAGAATTGCTCGGACAAGTATCTCCGAGATATTATTCTGAATTTCATGATAGCTGGCCGGGACACAACAGCAGTTACCCTTTGTTGGTTTTTTCATTTGCTTTGCAAAAATCCAGATGTTGAAGGAAAAATTCTGCAAGAAATTTGTGGCCTGGTCAAGGAAAATGAATGTATATCAATTGAAGAATCTATAAGTATGTTTTCTCAAAGTCTGACGCAATCAGTATTGGATAACATGCACTATCTTCAAGCAGCTTTATCAGAAGCCTTGCGCCTACACCCAGCTGTTCCTGTGGATGGAAAATATGTAGTTTCTGATGACATCCTTCCCGATGGATTCAAAGTCAAGAAAGGTGATATAATCAATTATGTCCCTTACTCAATGGGAAGAATGACATACCTCTGGGGCAGTGATGCAGAGGAGTTTAGGCCAGAGAGGTGGCTTCAGAATGGAGTTTTTACGCCTCAATCACCATTCAAATTCACTGCATTTCAGGCTGGACCTCGCATTTGTCTTGGCAAGGACTTTGCATACATGCAAATGAAGATTTTTGCTGCTGTGCTTGTACGTTTCTTCAAATTTGAAGCTGTTGAAGGTAAGGAAGTGAAATATCGTCCCTCACTGACACTCCATATGACTGAAGATGGATTAAATCTTCGTGTCAAGCCTAGATTAGATTGCTGA___GCACAGTTTTACTTCACAATAAGGTACAGCAATACACAGAAAGCTTTTATCCGTTGTACATAAGTATTTTAAGATATTCTGATTTTGTCTAGTTGAAGGCATCTGTTATTTTGAGTCATACCACAATATCAAAACCCCCTTGGGTGATGAAAACATTGTTTGAATAGAAAATGTTGAAGGAGCCAGACAAGTAGAACACACTAGGCACAGTCTACAGAACAGTGCTTCACAATATAAGTTATATCATCTTATGTATTCATAGGTGCCCATCTGTGGCATCAATTCCCTGTTTTTCTAATAAGAACTTTATCTTATTCTTTTGAATAAATGTTTAATAAAATAATAAAGAATTACTGG

Fln Alignment:

Contig6346___VEYATASIALALLVILYFKMKCSGDLCHPVAATVVSHIINFKRIHDYLCDHHRRYKTYRISYPTFSYVYTTDPANVEHILRKNFANYVKGKFNHDIMEDLLGDGIFSVDGEQWRQQRKLASFEFSTKMLKDFSSVAFRENVVKLSKILLEASGAKQAVEMQGLLLKSTMDAICKLGFGVEINSLS--KANSGAEASFAEAFDTANAMLLWRY-VDLSWKLKRYFNIGSEVTMKESIKTVDDFVYKVIQKRRKEI-SVQNNYVKPDILSRFIALSEKHPEN-CSDKYLRDIILNFMIAGRDTTAVTLCWFFHLLCKNPDVEGKILQEICGL--VKENXXXXXXXXXXMFSQSLTQSVLDNMHYLQAALSEALRLHPAVPVDGKYVVSDDILPDGFKVKKGDIINYVPYSMGRMTYLWGSDAEEFRPERWLQNGVFTPQSPFKFTAFQAGPRICLGKDFAYMQMKIFAAVLVRFFKFEAVEGKEVKYRPSLTLHMTEDGLNLRVKPRLD
Q50EK3______________VTVSALALACSLWIASYLRNWRKKGVYPPVVGTMLNHAINFERLHDYHTDQAQRYKTFRVVYPTCSYVFTTDPVNVEHILKTNFANYDKGTFNYDIMKDLLGDGIFNVDGDKWRQQRKLASSEFASKVLKDFSSGVFCNNAAKLANILAQAAKLNLSVEMQDLFMRSSLDSICKVVFGIDINSLSSSKAESGPEASFAKAFDVANAMVFHRHMVGSFWKVQRFFNVGSEAILRDNIKMVDDFLYKVIHFRRQEMFSAEKENVRPDILSRYIIISDKETDGKVSDKYLRDVILNFMVAARDTTAIALSWFIYMLCKHQHVQEKLLEEIISSTSVHEDQYSTECNDIASFAQSLTDEALGKMHYLHASLSETLRLYPALPVDGKYVVNEDTLPDGFKVKKGDSVNFLPYAMGRMSYLWGDDAKEFKPERWIQDGIFHPKSPFKFPAFQAGPRTCLGKDFAYLQMKIVAAVLVRFFKFEAVKTKEVRYRTMLTLHMNEDGLNVQVTPRLN

SNPs (tot: 58)

Position	A %	C %	G %	T %	Probability
647	25		75		0.996473
706	20		80		0.995493
730	80		20		0.995493
740		80		20	0.995493
745		60	40		1.0
749		16		83	0.994512
760	33		66		1.0
825		66		33	1.0
835	83			16	0.994512
869	71		28		1.0
875	71	28			1.0
877			85	14	0.993533
892	71		28		1.0
893	71		28		1.0
894	71	28			1.0
907	66		33		1.0
917		16		83	0.994512
955			83	16	0.994512
958	33			66	1.0
960	33		66		1.0
997		80		20	0.995493
1000			80	20	0.995493
1011	20		80		0.995493
1021	20			80	0.995493
1043			20	40	1.0
1046	20	80			0.995493
1089	80		20		0.995493
1102		80	20		0.995493
1126	71		28		1.0
1152		14		85	0.993533
1159	85		14		0.993533
1205		14	85		0.993533
1220		16		83	0.994512
1227		16		83	0.994512
1251			50	33	1.0
1269	20		80		0.995493
1292		80		20	0.995493
1297		20		80	0.995493
1313	50		50		1.0
1400		16	83		0.994512
1445		20		80	0.995493
1467	20	80			0.995493
1469			20	80	0.995493
1528		20		80	0.995493
1529		80		20	0.995493
1638			18	81	0.999994
1641		90		10	0.90298
1652		85		14	0.993533
1668	83			16	0.994512
1676		16	83		0.994512
1677	83			16	0.994512
1678	83	16			0.994512
1681		80		20	0.995493
1683			20	80	0.995493
1693	25		75		0.996473
1734	66	33			0.997452
1858	66		33		0.997452
1905		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain