SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6343

Length: 2617 nt

UniGene Fasta

>sp_v3.0_unigene6343
CAGTTGTCAAAGTCTCAAAAGGAATTTCATCTGCTGTCGAAGAAGAAATTCCTTTTGAGACTTTGACAACGATGATGATGAAGATGATGTGGTCGCACTGGAAAGGAAGATGCAAAGTGCAGGCATGCCATCAATTGTCTGGAAGCATGCTCAAAGAGAATTAAGGCGATTAAGGAAGATGCAACCACAGCAACCTGGCTATAGTAGCTCTCGGACTTATCTAGAACTGCTGGCTGACTTGCCATGGCAAATAAGTAGTGAAGAACACAAGATTGATCTACGGGCGGCAAAGGAACGTCTTGATAGAGCACATTTTGGTCTAGGGAAAGTGAAAAACCGAATTATTGAATACCTAGCTGTTCGGAAGCTAAAACCAGATGCAAAAGGTCCTGTGCTGTGCTTTGTTGGTCCCCCTGGTGTTGGCAAGACTTCATTGGCGTCATCCATTGCTGGGGCTCTGGATAAAAAATTTGTCCGAATCTCCCTTGGTGGTGTCAAGGATGAAGCTGATATAAGAGGGCATAGAAGAACATACATAGGAAGTATGCCTGGTCGTCTCATTGAGGGCTTGAAGAGAGTGGGAGTGAACAATCCTGTAATACTTCTAGATGAGGTTGATAAGACGGGTTCAGATGTGCGAGGAGACCCGGCATCTGCATTGTTAGAAGTTCTTGACCCTGAACAAAACAAGACCTTTAATGATCACTATTTAAATGTTCCTTTTGACCTTTCCAAAGTGGTATTTGTAGCAACTGCAAATAGAGTGCAGCCAATACCTCCAGCACTTTTGGACCGTATGGAAGTGATAGAATTGCCTGGGTATACACCAGCAGAAAAACTAAGAATAGCTATGTGCCATTTAATACCTCGAGTTCTTGACCAACATGGTCTCACATCTCGGTATCTTCAAATTTCAGAGTCTGTGGTGGAGATCATAATTCAAAGGTACACTCGTGAAGCTGGTGTGCGAAATTTAGAACGCCATTTGGCATCCCTGGCTCGGGCTGCAGCTGTTAAAGTAGCTGAGCGAGAACAATCTTTTCGGTTGACTAAAGAAATACACTCTGATACACCGTCCTTGCTAGAAGGAAGTAGCCTTGCAGATACTGGAGAGATTGAGGTAGAAGTTGTACCTATGGGTGTGAATGGTCATGAGATCTCTCGTGCCATGGAATCAACTGAGATTTTAGTTGTTGATGAATCCATGATTGAAAAAGTTCTTGGGCCTCCTAAATTTGATGACAGGGAAGCTGCTGAGCGCGTTTCCACCCCAGGAGTTGCTGTGGGGCTTGTATGGACTGCATTTGGTGGTGAAGTTCAGTTTGTTGAAGCAACTGCAATGGTAGGGAAGGGTGACATGCATCTTACAGGCCAGCTTGGAGATGTCATAAAGGAATCGGCACAAATAGCATTAACTTGGGTGAGAGCAAGGGCTGCTGAATTGAGACTTGCAACTGCATCGGAGGTCAACCTGATGGAAAGTCGTGACATTCATATTCATTTTCCAGCAGGAGCTGTGCCCAAGGATGGTCCATCCGCTGGAGTAACATTAGTGACTGCTTTAGTGTCTTTACTTGGTAAGAAGAATGTCCGAGCTGATACTGCAATGACTGGTGAAATGACCTTGAGGGGTCTTGTACTACCTGTTGGAGGAATCAAAGATAAGATACTGGCTGCGCACCGATGTGGTATCAAAAGAATTATTTTGCCAGAAAAAAATGTTAAAGATTTGGTGGAAGTTCCAGCTGCTGTTCTTCTCAATGTTGAGATTTTGCTTGCAAAGCGAATGGAGGATGTACTGAACGAAGCCTTTGAAGGGGGATGCCCATGGAGGCAACTTTCAAAGTTGTAAGAAGCTTCAGCTTGACAAGGGCAGTTGCTTTGTAGAATATGGAGACAGCATCCCAGGTTGCAGGAGATGGGGCTGTATGGTATCAGATTTTGATAGGTGAAATATCTGGTGTAACGTAGTTCGGCATGAGACTGGTCCAGGATTGTGCTGTTGGTTTCTGCTCACATATGAAGGCACTTCAACCTCTTCTGATAATCTTTGTTGCTATTCTTCCCATGTTTGAATTGTATGAATTAGAAGACTGGTTTATCAGAGAAATTATGATGGTCTAGATTTCAATGATGGTGCTCTAGTTTGTAACTTTATATGGCCTCAGTGAATTTGTATTATTAGATTAACTTTTACGCACCCACACTTAGTGCTCTGTATGCTGTACTGTGCAGCGTCAGATCTAAAGTTATTTATATCCCACAGTGCACAACCCTGCATAGGTTTATGGAGAGCCTGCTTCCCATAGATAAATTGCTGGTGGGGACATTCGGAATATGCATGTATGCATTCTGTCCATGCAATTTGATAATAAATGATCATGGGAAATACTCCTGAAAGAAATCCCTATAACATAGGCATAGTTTAGAGGGATGTTTCCATGGAAACCGTTAAATTTAAGTACACAAGAGAGCATATGAGTAGAGAGATGACATCGTTGAAATTTAGATGGAGAATTACTAGTTTCAGCAAATGATGGAACTATTACCTATGATTGCAATTGACTCTGTATTTGTAAAAAAGGATGATACTTTGATGAATATTTTTATGTCCAGT

Ace file of the UniGene sp_v3.0_unigene6343

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent protease La, putative n=1 Tax=Ricinus communis RepID=B9SS30_RICCO	-	-	0.0	77%
FL-Next	sp=Lon protease homolog 2, peroxisomal; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	79%
Sma3	Lon protease homolog	-	-	4.436e-31	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	4.536e-42	-

Source	Gene names
Sma3	At3g05780; At3g05790; At5g26860; At5g47040; F10A16.7; F10A16.8; F2P16.23; GSVIVT00015852001; GSVIVT00022610001; LON; LON1; Lon1; MICPUCDRAFT_33463; MICPUCDRAFT_70910; MICPUN_113675; MICPUN_59450; MQD22.18; OJ1112_E07.9; OSTLU_41620; OSTLU_52138; Os09g0533

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	ATP-dependent peptidase activity	GO:0004176	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	ATP-dependent proteolysis	GO:0006510	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Chaperonin ClpA/B	IPR001270	-	-
Sma3		IPR001984	-	-
Sma3	Peptidase S16, lon N-terminal	IPR003111	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Peptidase S16, ATP-dependent protease La	IPR004815	-	-
Sma3	Peptidase S16, active site	IPR008268	-	-
Sma3	Peptidase S16, Lon C-terminal	IPR008269	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G47040.1	LON2 lon protease 2 chr5:19093356-19098678 REVERSE LENGTH=888	79%
RefSeq	Arabidopsis thaliana	NP_568675.1	ATP-dependent Lon protease [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002326492.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O64948

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 617 - 888

Fln protein: SCQSLKRNFICCRRRNSF*DFDNDDDEDDVVALERKMQSAGMPSIVWKHAQRELRRLRKMQPQQPGYSSSRTYLELLADLPWQISSEEHKIDLRAAKERLDRAHFGLGKVKNRIIEYLAVRKLKPDAKGPVLCFVGPPGVGKTSLASSIAGALDKKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIEGLKRVGVNNPVILLDEVDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVVFVATANRVQPIPPALLDRMEVIELPGYTPAEKLRIAMCHLIPRVLDQHGLTSRYLQISESVVEIIIQRYTREAGVRNLERHLASLARAAAVKVAEREQSFRLTKEIHSDTPSLLEGSSLADTGEIEVEVVPMGVNGHEISRAMESTEILVVDESMIEKVLGPPKFDDREAAERVSTPGVAVGLVWTAFGGEVQFVEATAMVGKGDMHLTGQLGDVIKESAQIALTWVRARAAELRLATASEVNLMESRDIHIHFPAGAVPKDGPSAGVTLVTALVSLLGKKNVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRCGIKRIILPEKNVKDLVEVPAAVLLNVEILLAKRMEDVLNEAFEGGCPWRQLSKL*

Protein Length: 618

Fln nts: CAGTTGTCAAAGTCTCAAAAGGAATTTCATCTGCTGTCGAAGAAGAAATTCCTTTTGAGACTTTGACAACGATGATGATGAAGATGATGTGGTCGCACTGGAAAGGAAGATGCAAAGTGCAGGCATGCCATCAATTGTCTGGAAGCATGCTCAAAGAGAATTAAGGCGATTAAGGAAGATGCAACCACAGCAACCTGGCTATAGTAGCTCTCGGACTTATCTAGAACTGCTGGCTGACTTGCCATGGCAAATAAGTAGTGAAGAACACAAGATTGATCTACGGGCGGCAAAGGAACGTCTTGATAGAGCACATTTTGGTCTAGGGAAAGTGAAAAACCGAATTATTGAATACCTAGCTGTTCGGAAGCTAAAACCAGATGCAAAAGGTCCTGTGCTGTGCTTTGTTGGTCCCCCTGGTGTTGGCAAGACTTCATTGGCGTCATCCATTGCTGGGGCTCTGGATAAAAAATTTGTCCGAATCTCCCTTGGTGGTGTCAAGGATGAAGCTGATATAAGAGGGCATAGAAGAACATACATAGGAAGTATGCCTGGTCGTCTCATTGAGGGCTTGAAGAGAGTGGGAGTGAACAATCCTGTAATACTTCTAGATGAGGTTGATAAGACGGGTTCAGATGTGCGAGGAGACCCGGCATCTGCATTGTTAGAAGTTCTTGACCCTGAACAAAACAAGACCTTTAATGATCACTATTTAAATGTTCCTTTTGACCTTTCCAAAGTGGTATTTGTAGCAACTGCAAATAGAGTGCAGCCAATACCTCCAGCACTTTTGGACCGTATGGAAGTGATAGAATTGCCTGGGTATACACCAGCAGAAAAACTAAGAATAGCTATGTGCCATTTAATACCTCGAGTTCTTGACCAACATGGTCTCACATCTCGGTATCTTCAAATTTCAGAGTCTGTGGTGGAGATCATAATTCAAAGGTACACTCGTGAAGCTGGTGTGCGAAATTTAGAACGCCATTTGGCATCCCTGGCTCGGGCTGCAGCTGTTAAAGTAGCTGAGCGAGAACAATCTTTTCGGTTGACTAAAGAAATACACTCTGATACACCGTCCTTGCTAGAAGGAAGTAGCCTTGCAGATACTGGAGAGATTGAGGTAGAAGTTGTACCTATGGGTGTGAATGGTCATGAGATCTCTCGTGCCATGGAATCAACTGAGATTTTAGTTGTTGATGAATCCATGATTGAAAAAGTTCTTGGGCCTCCTAAATTTGATGACAGGGAAGCTGCTGAGCGCGTTTCCACCCCAGGAGTTGCTGTGGGGCTTGTATGGACTGCATTTGGTGGTGAAGTTCAGTTTGTTGAAGCAACTGCAATGGTAGGGAAGGGTGACATGCATCTTACAGGCCAGCTTGGAGATGTCATAAAGGAATCGGCACAAATAGCATTAACTTGGGTGAGAGCAAGGGCTGCTGAATTGAGACTTGCAACTGCATCGGAGGTCAACCTGATGGAAAGTCGTGACATTCATATTCATTTTCCAGCAGGAGCTGTGCCCAAGGATGGTCCATCCGCTGGAGTAACATTAGTGACTGCTTTAGTGTCTTTACTTGGTAAGAAGAATGTCCGAGCTGATACTGCAATGACTGGTGAAATGACCTTGAGGGGTCTTGTACTACCTGTTGGAGGAATCAAAGATAAGATACTGGCTGCGCACCGATGTGGTATCAAAAGAATTATTTTGCCAGAAAAAAATGTTAAAGATTTGGTGGAAGTTCCAGCTGCTGTTCTTCTCAATGTTGAGATTTTGCTTGCAAAGCGAATGGAGGATGTACTGAACGAAGCCTTTGAAGGGGGATGCCCATGGAGGCAACTTTCAAAGTTGTAA___GAAGCTTCAGCTTGACAAGGGCAGTTGCTTTGTAGAATATGGAGACAGCATCCCAGGTTGCAGGAGATGGGGCTGTATGGTATCAGATTTTGATAGGTGAAATATCTGGTGTAACGTAGTTCGGCATGAGACTGGTCCAGGATTGTGCTGTTGGTTTCTGCTCACATATGAAGGCACTTCAACCTCTTCTGATAATCTTTGTTGCTATTCTTCCCATGTTTGAATTGTATGAATTAGAAGACTGGTTTATCAGAGAAATTATGATGGTCTAGATTTCAATGATGGTGCTCTAGTTTGTAACTTTATATGGCCTCAGTGAATTTGTATTATTAGATTAACTTTTACGCACCCACACTTAGTGCTCTGTATGCTGTACTGTGCAGCGTCAGATCTAAAGTTATTTATATCCCACAGTGCACAACCCTGCATAGGTTTATGGAGAGCCTGCTTCCCATAGATAAATTGCTGGTGGGGACATTCGGAATATGCATGTATGCATTCTGTCCATGCAATTTGATAATAAATGATCATGGGAAATACTCCTGAAAGAAATCCCTATAACATAGGCATAGTTTAGAGGGATGTTTCCATGGAAACCGTTAAATTTAAGTACACAAGAGAGCATATGAGTAGAGAGATGACATCGTTGAAATTTAGATGGAGAATTACTAGTTTCAGCAAATGATGGAACTATTACCTATGATTGCAATTGACTCTGTATTTGTAAAAAAGGATGATACTTTGATGAATATTTTTATGTCCAGT

Fln Alignment:

Contig6343___VVALERKMQSAGMPSIVWKHAQRELRRLRKMQPQQPGYSSSRTYLELLADLPWQISSEEHKIDLRAAKERLDRAHFGLGKVKNRIIEYLAVRKLKPDAKGPVLCFVGPPGVGKTSLASSIAGALDKKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIEGLKRVGVNNPVILLDEVDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVVFVATANRVQPIPPALLDRMEVIELPGYTPAEKLRIAMCHLIPRVLDQHGLTSRYLQISESVVEIIIQRYTREAGVRNXXXXXXXXXXXXXXXXXXXXQSFRLTKEIHSDTPSLLEGSSLADTGEIEVEVVPMGVNGHEISRAMESTEILVVDESMIEKVLGPPKFDDREAAERVSTPGVAVGLVWTAFGGEVQFVEATAMVGKGDMHLTGQLGDVIKESAQIALTWVXXXXXXXXXXXXSEVNLMESRDIHIHFPAGAVPKDGPSAGVTLVTALVSLLGKKNVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRCGIKRIILPEKNVKDLVEVPAAVLLNVEILLAKRMEDVLNEAFEGGCPWR
O64948______________VAALERKMQAAGMPSNIWKHAQRELRRLKKMQPQQPGYNSSRVYLELLADLPWDKASEEHELDLKAAKERLDSDHYGLAKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRLSLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVGVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKSFNDHYLNVPYDLSKVVFVATANRVQPIPPPLLDRMELIELPGYTQEEKLKIAMRHLIPRVLDQHGLSSEFLKIPEAMVKNIIQRYTREAGVRSLERNLAALARAAAVMVAEHEQSLPLSKDVQKLTSPLLNG-RMAEGGEVEMEVIPMGVNDHEIGGTFQSPSALVVDETMLEKILGPPRFDDSEAADRVASAGVSVGLVWTTFGGEVQFVEATSMVGKGEMHLTGQLGDVIKESAQLALTWVRARASDFKLALAGDMNVLDGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSQKRVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPQRNSKDLVEVPAAVLSSLEVILAKRMEDVLENAFEGGCPWR

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
2010	14	85			0.993533
2013		85	14		0.993533
2014			14	85	0.993533
2020	87		12		0.992554
2021			12	87	0.992554
2046	88	11			0.923564
2048			11	88	0.923564
2070	10		90		0.90298
2072			10	90	0.90298
2073			10	90	0.90298
2092			70	30	1.0
2302		23		76	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain