SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6337

Length: 2041 nt

UniGene Fasta

>sp_v3.0_unigene6337
CGTCGTGACCTTGGCTGTCATTGGGGTTTGTAAGGTGTCTCGGACAAACAACCGTTTTTGGAAATACTTATTAGGCTATCCTACTAGGTATTCCTTCATTCGTCCAATATCCTACTAGGTATTCATTCACGCGTCCACTGTATTTTGGAACGCCATACCTGTCAGCTTTATTTGGGACAGAAACAACGAACCCGAGAGAAGATAAAAATCTATTCTTTGAAGATTGAAGGCTAGCGAGGGATACTGGTCTTGATTCCAAGGTGTCTCATTTGCTTCCGGTACTTTACAACTTTGTGGCAACTTATATTTATCACAGTTTACGCCAGCTTCGTCTGAAACAAGTTCGGTCTTGAAGTGCGTTGGTCAAAATGGATGGATCAGCAGCTGATGGGGGCGAATCCACTTTAGTTTGTGTCCGTTGCAGCAAACCTGCTCGGCTTCAGTGTCCTAAATGCGTTGAACTAAAACTACCACGTGCAAATGCTGCTTTCTGTTCTCAGGATTGTTTTAAGGTGATGTGGAGCTCTCATAAATCTGTGCATACAGAGGTGAGATTTCCAGCACTTAGGGCAGATAGCCCAGAAGAGCAGATATCTGCAGCACTTAGTAGAGGCTGGTTATATTGCTTAAAAAAAGGCCAGACTCGAACTGCTCGACTTCCATATTTTGACTGGCCAGGGCCATTGAGACCTTATCCAATTTCCTCTAAGCGACTTGTTCCTGATAATATTGCAAAGCCGGATTGGGCACATGATGGAATACCAAAAGTGGAGCCAAAGAGTGATTTACAAAATACAGTTGAGATCAAGACTCCAGAACAGATAGAAAGGATGAGAGAGACATGCAGGATTGCCAGAGAGGTCCTTGATGCTGCTGCCAGAGCTGTCAGGCCAGGAATAACCACAGATGAAATTGATGAAGTGGTCCACGAGGCAACTATTGCTGCCGGTGGATATCCATCCCCATTAAACTATCACTTCTTTCCAAAGTCTTGCTGCACATCTGTTAATGAGGTTATCTGCCACGGCATCCCAGATGCCAGGAGATTGGAGGAAGGTGATATTGTGAATGTGGATGTAACTGTCTATTACAATGGTGTCCATGGCGATCTGAATGAGACTTTTTTTGTTGGAAAAGTTGATGATGCTTCTCAACATCTTGTTCGGTCTACATATGAGTGTTTGGAGAAAGCAATAGCTATAGTGAAACCAGGAGTAAGATTTCGTGAAGTGGGAGAGGTTATCAGTCGACATGCTTCAATGTCAGGGGTTTCTGTGGTGAAATCCTATTGTGGGCATGGTATTGGCGAGCTCTTCCATTGCGCACCAAATATACCTCACTATGGCCGAAATAAAGCTGTGGGTATCATGAAAGCTGGACAGACATTCACCATTGAGCCCATGATCAATGCAGGAGTATGGCGTGACAGAATGTGGCCAGATGGATGGACTGCTGTAACAGCAGATGGCAAGCGGAGTGCCCAGTTTGAACACACCCTTTTAGTAACAGAGACAGGAGTGGAAGTACTCACAGCACGCTTACCCAGCTCTCCAAATGTGTTCCCCTGGTAAAACCATTTAAAGCTATTCTGTTGCTACAAGTGAAATTGAGCAGTGATCAAAGGTTACAGTGCTGCTTCTTTGGGTACAATGCTGCTTCTTTGCAGCATCATTGTTTATACACCCATAATTTACAAGCTATGATGACATTGGATGTTGAGACCCTAGTGAGGCAGTTAGTCTGAAAATGCAAAGATTTCTCTGGGTACATTCCCAACAACAAGACATCTTAAAGTAGCAATGGATGATTCCCTCAGATTATCCTTGTTGGTATTGCAGACTGCATATTTTCTTCAACACAATCACCAGAATACATCATTTTAGTGCAAGATAACTATCTTCCAAATAAGAGAAAGTTTCATTGTTCTCTAATATTTTTTTTCTTGTTAAAATATTATTTTTCAGTCATGACCCTATTTGATATCAGTTACAATTTGAGTTCACAAATTTGATGTGCATAAGAGGAGTGAAATTTTCTGGTA

Ace file of the UniGene sp_v3.0_unigene6337

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Methionine aminopeptidase n=1 Tax=Picea sitchensis RepID=D5AE22_PICSI	-	-	95%
FL-Next	sp=Methionine aminopeptidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Methionine aminopeptidase 1	-	-	-

Source	Gene names
Sma3	MAP1;

Source	GOs	Term	Type	Identity
Sma3	aminopeptidase activity	GO:0004177	Molecular Function	-
Sma3	metalloexopeptidase activity	GO:0008235	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M24, methionine aminopeptidase	IPR001714	-	-
Sma3	Peptidase M24, structural domain	IPR000994	-	-
Sma3	Peptidase M24A, methionine aminopeptidase, subfamily 1	IPR002467	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G45240.1	MAP1A methionine aminopeptidase 1A chr2:18656059-18658906 FORWARD LENGTH=398	77%
RefSeq	Arabidopsis thaliana	NP_182049.1	methionine aminopeptidase 1A [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002320050.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE22

Fln msg:

Fln protein: MDGSAADGGESTLVCVRCSKPARLQCPKCVELKLPRANAAFCSQDCFKVMWSSHKSVHTEVRFPALRADSPEEQISAALSRGWLYCLKKGQTRTARLPYFDWPGPLRPYPISSKRLVPDNIAKPDWAHDGIPKVEPKSDLQNTVEIKTPEQIERMRETCRIAREVLDAAARAVRPGITTDEIDEVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARRLEEGDIVNVDVTVYYNGVHGDLNETFFVGKVDDASQHLVRSTYECLEKAIAIVKPGVRFREVGEVISRHASMSGVSVVKSYCGHGIGELFHCAPNIPHYGRNKAVGIMKAGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTARLPSSPNVFPW*

Protein Length: 402

Fln nts: CGTCGTGACCTTGGCTGTCATTGGGGTTTGTAAGGTGTCTCGGACAAACAACCGTTTTTGGAAATACTTATTAGGCTATCCTACTAGGTATTCCTTCATTCGTCCAATATCCTACTAGGTATTCATTCACGCGTCCACTGTATTTTGGAACGCCATACCTGTCAGCTTTATTTGGGACAGAAACAACGAACCCGAGAGAAGATAAAAATCTATTCTTTGAAGATTGAAGGCTAGCGAGGGATACTGGTCTTGATTCCAAGGTGTCTCATTTGCTTCCGGTACTTTACAACTTTGTGGCAACTTATATTTATCACAGTTTACGCCAGCTTCGTCTGAAACAAGTTCGGTCTTGAAGTGCGTTGGTCAAA_-_ATGGATGGATCAGCAGCTGATGGGGGCGAATCCACTTTAGTTTGTGTCCGTTGCAGCAAACCTGCTCGGCTTCAGTGTCCTAAATGCGTTGAACTAAAACTACCACGTGCAAATGCTGCTTTCTGTTCTCAGGATTGTTTTAAGGTGATGTGGAGCTCTCATAAATCTGTGCATACAGAGGTGAGATTTCCAGCACTTAGGGCAGATAGCCCAGAAGAGCAGATATCTGCAGCACTTAGTAGAGGCTGGTTATATTGCTTAAAAAAAGGCCAGACTCGAACTGCTCGACTTCCATATTTTGACTGGCCAGGGCCATTGAGACCTTATCCAATTTCCTCTAAGCGACTTGTTCCTGATAATATTGCAAAGCCGGATTGGGCACATGATGGAATACCAAAAGTGGAGCCAAAGAGTGATTTACAAAATACAGTTGAGATCAAGACTCCAGAACAGATAGAAAGGATGAGAGAGACATGCAGGATTGCCAGAGAGGTCCTTGATGCTGCTGCCAGAGCTGTCAGGCCAGGAATAACCACAGATGAAATTGATGAAGTGGTCCACGAGGCAACTATTGCTGCCGGTGGATATCCATCCCCATTAAACTATCACTTCTTTCCAAAGTCTTGCTGCACATCTGTTAATGAGGTTATCTGCCACGGCATCCCAGATGCCAGGAGATTGGAGGAAGGTGATATTGTGAATGTGGATGTAACTGTCTATTACAATGGTGTCCATGGCGATCTGAATGAGACTTTTTTTGTTGGAAAAGTTGATGATGCTTCTCAACATCTTGTTCGGTCTACATATGAGTGTTTGGAGAAAGCAATAGCTATAGTGAAACCAGGAGTAAGATTTCGTGAAGTGGGAGAGGTTATCAGTCGACATGCTTCAATGTCAGGGGTTTCTGTGGTGAAATCCTATTGTGGGCATGGTATTGGCGAGCTCTTCCATTGCGCACCAAATATACCTCACTATGGCCGAAATAAAGCTGTGGGTATCATGAAAGCTGGACAGACATTCACCATTGAGCCCATGATCAATGCAGGAGTATGGCGTGACAGAATGTGGCCAGATGGATGGACTGCTGTAACAGCAGATGGCAAGCGGAGTGCCCAGTTTGAACACACCCTTTTAGTAACAGAGACAGGAGTGGAAGTACTCACAGCACGCTTACCCAGCTCTCCAAATGTGTTCCCCTGGTAA___AACCATTTAAAGCTATTCTGTTGCTACAAGTGAAATTGAGCAGTGATCAAAGGTTACAGTGCTGCTTCTTTGGGTACAATGCTGCTTCTTTGCAGCATCATTGTTTATACACCCATAATTTACAAGCTATGATGACATTGGATGTTGAGACCCTAGTGAGGCAGTTAGTCTGAAAATGCAAAGATTTCTCTGGGTACATTCCCAACAACAAGACATCTTAAAGTAGCAATGGATGATTCCCTCAGATTATCCTTGTTGGTATTGCAGACTGCATATTTTCTTCAACACAATCACCAGAATACATCATTTTAGTGCAAGATAACTATCTTCCAAATAAGAGAAAGTTTCATTGTTCTCTAATATTTTTTTTCTTGTTAAAATATTATTTTTCAGTCATGACCCTATTTGATATCAGTTACAATTTGAGTTCACAAATTTGATGTGCATAAGAGGAGTGAAATTTTCTGGTA

Fln Alignment:

Contig6337___MDGSAADGGESTLVCVRCSKPARLQCPKCVELKLPRANAAFCSQDCFKVMWSSHKSVHTEVRFPALRADSPEEQISAALSRGWLYCLKKGQTRTARLPYFDWPGPLRPYPISSKRLVPDNIAKPDWAHDGIPKVEPKSDLQNTVEIKTPEQIERMRETCRIAREVLDAAARAVRPGITTDEIDEVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARRLEEGDIVNVDVTVYYNGVHGDLNETFFVGKVDDASQHLVRSTYECLEKAIAIVKPGVRFREVGEVISRHASMSGVSVVKSYCGHGIGELFHCAPNIPHYGRNKAVGIMKAGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTARLPSSPNVFPW
D5AE22______________MDGSATDGGESTLVCVRCSKPARLQCPKCVELKLPRANAAFCSQDCFKATWSSHKSVHTEARLPALRADSPEEQISAALSRGWLYCLKKGQSRTSRLPYFDWLGPLRPYPISSKRLVPDSISKPDWASDGIPKVEPMSDLQNTVEIKTPEQIEKMRETCRIAREVLDAAARAVRPGITTDELDEVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARRLEEGDIVNGDVTVYYNGVHGDLNETFFVGKVDEASQQLVRCTYECLEKAISIVKPGVRFREVGEVISRHASMSGVSVVKSYCGHGIGELFHCAPNIPHYGRNKAVGIMKAGQTFTIEPMINAGVWRDRMWPDGWIAVTADGKRSAQFEHTLLVTETGVEVLTARLPSSPNVFPW

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
868	66		33		0.997452
1119	16			16	0.988813
1122	20			80	0.995493
1507	90		10		0.90298
1602			88	11	0.923564
1651	16		83		0.994512
1705		14		85	0.993533
1752	87		12		0.992554
1801	80			20	0.999996
1808	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain