SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6317

Length: 3389 nt

UniGene Fasta

>sp_v3.0_unigene6317
ATGGGGGTGGGCTCCCAAAACGGCTCCCCTCACAAACGGGAAACATATTTCAGACTTGGGGAGCAGATATCGGCTGTGTAAGAAATTCTAATAATAGTAATAGGCCAATGTTGGCACCTAAGTGCTCCAGATTATCACTATTCCCGTCCTCTTATCCATTATTATGCTCGCCTCTGGCGGTGTCGTCCACTGGGTGTGCCATTTTTCAATGCCAGACCTTGCATTTTGCCAGATTTAGAAGAAGGGTTTCGCCCTTGAAGTTGAGTAAGTGTGTATATTCATTTGGGTATTTGGGCGTTTCAGGCAGGCGAAGCGGGGATTCAATGGATTCTTTTAGAGGGCATTCCACAAACAAGCTTGTTCCTGTTTCAAGCATGGAAGATACACAGGACTCTGATAAGTCAGCAGCCCCTCCTTTGGAAGATGAAGAAACTTCAGTTTACAATGGCTATCGTCTCCCTCCAATAGATATTAGAAATATTGTTGATGCACCACCAACTCCTGCTCTGTCTTTTTCTCCTAATAGAGATAAGATTTTATTTCTCAAACGTAGGGCCTTACCTCCACTCTCAGAGTTTGCAAGACCAGAAGAAAAGCTTGCTGGAATCCGTATTGATGGAAACTGTAATACAAGAAGCCGTATGTCATTTTACACTGGAATAGGGATCCATAAACTGATGGAAGATGACACTCTAGGACCAGAGATTGAAGTCTTTGGTTTCCCAGATGGTGCAAAGATCAATTTTATAAGTTGGTCACGAGATGGTCGGTATCTATCTTTTACTATTCGGTTTGATCAGGGGGATAATACAAGCAGTAAGTTGAGTCTTTGGGTCGCGGATGTAGAAACAGGGCAGGCAAGGCCATTATTCACCACATCTGAAATCTATGTAAATGCAATTTTTGACAACTTTGTGTGGATTGATGAGTCGACACTAGTTGTGTGTATCATACCTTTATCTCGTGGAGAACCTCCAAAAAAGCCACTGATTCCATCGGGTCCAAAGATTCAATCCAATGAGGACAAAAATGTAGTGCAATTGAGAACCTATCAAGATCTTTTGAAAGACGAATATGATGCAGACCTCTTTGATTACTATGCGACAACACAATTACTTTGGGTCAAATTAGATGGAACAACGAAAGCTATAGGACCACCAGCCATCTATACATCCATAAATCCTTCTCCTGATAATAAATATCTCCTTGTCACCTCAATTCACAGGCCGTACTCATTTATTGTCCCTTGTGGAAGGTTTCCCAAGAAAGTTGAAGTATGGACCTCTGATGGAAAATTTGTCCGTGAGATATGTGATCTTCCTCTCGCGGAAAAAAATTCCAATAACTTTTAACAGTGTTCGAAAAGGCATGAGGTCTATCAATTGGCGATCTGATAAGCCTTCATTGCTCTACTGGGCAGAGACACAAGATGGCGGTGATGCAAAGGTGGATGTTTCTCCTCGTGATATTATCTACACACAATCTGCTGAACCAAAGCTTGGTGAGGAACCTGAGGTTCTTCATAAGCTAGATCTCCGTTTTGGAGGGATATCATGGGGTGATGATTCATTGGCTCTGGTGTACGAGTCATGGTATAAAACAAGGCGCACACGGACATGGGTAATATCTCCAGCTGATAGAGAAGGGGCTCGTATATTATTTGACAGGTCATCAGAGGACGTGTATTCTGATCCAGGCTCACCAATGCTTCGGAGGACCTTGTTAGGAACTTACGTTCTTGCAAAGATAAAAAAACAAGACGGAAGTACATATCTCTTGTTGAATGGATATGGGGCAACACCAGAAGGAAATGTTCCTTTTCTTGATCTTTTAAACATAAACACAAGTGAAAAGGAGCGTATATGGGAAAGTGACAAGGAAAAGTACTACCAGTCAGTTTCTGCTTTGATGTCTGATCAGTACGATGGTGATATGGAGCTCAACAAACTGAAAATTCTTTTTTCTAAGGAGTCAAAAACAGAAAATCCACAGTTTTTCTTGCAGAGCTGGCCAGATAAAAGAATTACTCAAATTACAAATTTTCCCCACCCATACCCTCAACTCTCTAACTTGCAGAAAGAGATGATTAGATACAAACGTAAAGATGGGGTGCAGCTTACTGCAACCTTATATTTACCTCCTGGTTATGATGCTGCGAAGGATGGACCTCTTCCAACATTGGTATGGTCTTACCCGGGAGAATTTAAGAGTAAAGATGCAGCTAGCCAAGTGCGTGGTTCCCCCAATGAATTTGCTGGAATAGGTTCAACATCACCGCTTTTATGGTTGGTTAGAGGGTTTGCTATATTGTCTGGACCAACTATTCCAATTATTGGAGAGGGAGATGAGGAGGCAAATGACAGGTATGTTGAACAGCTGGTGGCTAGTGCCGAGGCTGCAGTTGATGAAGTTGTCAGACGAGGGGTTACCCATCCAAATAAAATAGCTATTGGTGGTCACTCATATGGAGCATTCATGACTGCTAATCTTCTGGCACATGCACCTCATCTTTTTTCCTGTGGTATTGCTCGGTCAGGAGCTTATAACAGAACACTTACTCCATTTGGATTTCAGAATGAAGAGAGGACATTATGGGAAGCAACAAAGACGTATATTGATATGAGCCCGTTTATGTTAGCGAATCAAATAAAGAAGCCTATTTTGCTTGTCCACGGAGAAGAGGACAACAATTCTGGAACTCTCACAATGCAGTCAGAGCGGTTCTTCAATGCGCTGAAAGGACATGGTTCACTCTGTCGCCTTGTGCTTCTTCCCTATGAAAGCCATGGCTACTATGCCCGTGAAAGCATAATGCATTTGCTCTTTGAGACTGACAGATGGCTAGATAAGTTCTGTGTGAATTCCCCGGACAGTACTTCTGATGGCAAATCCTCTGGCGAAATGGAGAAAGCTGTTGGAGAGGATAAATTTGTTTTGGCTGGAAAGGGTGGAAGTACCAACCCAGAAGAAGATTCTGAACACAATTCTTTCTGTTCATTGCCAAGGTCATCTTTGTGACAAAATTTCTGTCTGCCATTTGGTGTCTGTTCAAGGTTTAATCTGAGAGAAATTTCTCAATTATTTATTTATTATATATTTTTAATGGCCATTCGTGTCAGATCACGTCAACAGAAGCATCTGTAGGCTGATGCCTCCTAGAATTTCAAACAAGTCTTGCATTGACAGAGGAATGTCATGAAATCACTTCTACACAATTGCTTAAGAATAAATGTAACCAGTGATAGTGATTTTGTCTACCCTTGTTTTAATTTCTCATCTGCACCATTTTAGTAAAGATGTTGTGTATGCGTTTACTTGGGAAGCTTCTATTAAGATATAGTCTTTTGTTGGACCTCCCAAGCCATAATGAAAAAGGTGTTTAATAAGAC

Ace file of the UniGene sp_v3.0_unigene6317

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dipeptidyl-peptidase, putative n=1 Tax=Ricinus communis RepID=B9RNE4_RICCO	-	-	0.0	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%

Source	Gene names
Sma3	At2g47390; CHLREDRAFT_112991; CHLREDRAFT_98354; GSVIVT00028112001; LOC_Os03g19410; MICPUCDRAFT_15371; MICPUN_80220; OJ1165_F02.126; OSTLU_249; Os03g0307100; Os07g0689400; OsI_11240; OsI_27416; OsJ_10563; OsJ_25660; Ot09g00370; P0597G07.109; PHYPADRAFT_115

Source	GOs	Term	Type	Identity
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	aminopeptidase activity	GO:0004177	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	serine-type peptidase activity	GO:0008236	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S9, prolyl oligopeptidase, catalytic domain	IPR001375	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G47390.1	Prolyl oligopeptidase family protein chr2:19442278-19446253 REVERSE LENGTH=961	77%
RefSeq	Arabidopsis thaliana	NP_850473.1	prolyl oligopeptidase-like protein [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002301512.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNQ5

Fln msg: your sequence is longer than subject: 577 - 103

Fln protein: MENLSVRYVIFLSRKKIPITFNSVRKGMRSINWRSDKPSLLYWAETQDGGDAKVDVSPRDIIYTQSAEPKLGEEPEVLHKLDLRFGGISWGDDSLALVYESWYKTRRTRTWVISPADREGARILFDRSSEDVYSDPGSPMLRRTLLGTYVLAKIKKQDGSTYLLLNGYGATPEGNVPFLDLLNINTSEKERIWESDKEKYYQSVSALMSDQYDGDMELNKLKILFSKESKTENPQFFLQSWPDKRITQITNFPHPYPQLSNLQKEMIRYKRKDGVQLTATLYLPPGYDAAKDGPLPTLVWSYPGEFKSKDAASQVRGSPNEFAGIGSTSPLLWLVRGFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVDEVVRRGVTHPNKIAIGGHSYGAFMTANLLAHAPHLFSCGIARSGAYNRTLTPFGFQNEERTLWEATKTYIDMSPFMLANQIKKPILLVHGEEDNNSGTLTMQSERFFNALKGHGSLCRLVLLPYESHGYYARESIMHLLFETDRWLDKFCVNSPDSTSDGKSSGEMEKAVGEDKFVLAGKGGSTNPEEDSEHNSFCSLPRSSL*

Protein Length: 578

Fln nts: ATGGGGGTGGGCTCCCAAAACGGCTCCCCTCACAAACGGGAAACATATTTCAGACTTGGGGAGCAGATATCGGCTGTGTAAGAAATTCTAATAATAGTAATAGGCCAATGTTGGCACCTAAGTGCTCCAGATTATCACTATTCCCGTCCTCTTATCCATTATTATGCTCGCCTCTGGCGGTGTCGTCCACTGGGTGTGCCATTTTTCAATGCCAGACCTTGCATTTTGCCAGATTTAGAAGAAGGGTTTCGCCCTTGAAGTTGAGTAAGTGTGTATATTCATTTGGGTATTTGGGCGTTTCAGGCAGGCGAAGCGGGGATTCAATGGATTCTTTTAGAGGGCATTCCACAAACAAGCTTGTTCCTGTTTCAAGCATGGAAGATACACAGGACTCTGATAAGTCAGCAGCCCCTCCTTTGGAAGATGAAGAAACTTCAGTTTACAATGGCTATCGTCTCCCTCCAATAGATATTAGAAATATTGTTGATGCACCACCAACTCCTGCTCTGTCTTTTTCTCCTAATAGAGATAAGATTTTATTTCTCAAACGTAGGGCCTTACCTCCACTCTCAGAGTTTGCAAGACCAGAAGAAAAGCTTGCTGGAATCCGTATTGATGGAAACTGTAATACAAGAAGCCGTATGTCATTTTACACTGGAATAGGGATCCATAAACTGATGGAAGATGACACTCTAGGACCAGAGATTGAAGTCTTTGGTTTCCCAGATGGTGCAAAGATCAATTTTATAAGTTGGTCACGAGATGGTCGGTATCTATCTTTTACTATTCGGTTTGATCAGGGGGATAATACAAGCAGTAAGTTGAGTCTTTGGGTCGCGGATGTAGAAACAGGGCAGGCAAGGCCATTATTCACCACATCTGAAATCTATGTAAATGCAATTTTTGACAACTTTGTGTGGATTGATGAGTCGACACTAGTTGTGTGTATCATACCTTTATCTCGTGGAGAACCTCCAAAAAAGCCACTGATTCCATCGGGTCCAAAGATTCAATCCAATGAGGACAAAAATGTAGTGCAATTGAGAACCTATCAAGATCTTTTGAAAGACGAATATGATGCAGACCTCTTTGATTACTATGCGACAACACAATTACTTTGGGTCAAATTAGATGGAACAACGAAAGCTATAGGACCACCAGCCATCTATACATCCATAAATCCTTCTCCTGATAATAAATATCTCCTTGTCACCTCAATTCACAGGCCGTACTCATTTATTGTCCCTTGTGGAAGGTTTCCCAAGAAAGTTGAAGTATGGACCTCTG_-_ATGGAAAATTTGTCCGTGAGATATGTGATCTTCCTCTCGCGGAAAAAAATTCCAATAACTTTTAACAGTGTTCGAAAAGGCATGAGGTCTATCAATTGGCGATCTGATAAGCCTTCATTGCTCTACTGGGCAGAGACACAAGATGGCGGTGATGCAAAGGTGGATGTTTCTCCTCGTGATATTATCTACACACAATCTGCTGAACCAAAGCTTGGTGAGGAACCTGAGGTTCTTCATAAGCTAGATCTCCGTTTTGGAGGGATATCATGGGGTGATGATTCATTGGCTCTGGTGTACGAGTCATGGTATAAAACAAGGCGCACACGGACATGGGTAATATCTCCAGCTGATAGAGAAGGGGCTCGTATATTATTTGACAGGTCATCAGAGGACGTGTATTCTGATCCAGGCTCACCAATGCTTCGGAGGACCTTGTTAGGAACTTACGTTCTTGCAAAGATAAAAAAACAAGACGGAAGTACATATCTCTTGTTGAATGGATATGGGGCAACACCAGAAGGAAATGTTCCTTTTCTTGATCTTTTAAACATAAACACAAGTGAAAAGGAGCGTATATGGGAAAGTGACAAGGAAAAGTACTACCAGTCAGTTTCTGCTTTGATGTCTGATCAGTACGATGGTGATATGGAGCTCAACAAACTGAAAATTCTTTTTTCTAAGGAGTCAAAAACAGAAAATCCACAGTTTTTCTTGCAGAGCTGGCCAGATAAAAGAATTACTCAAATTACAAATTTTCCCCACCCATACCCTCAACTCTCTAACTTGCAGAAAGAGATGATTAGATACAAACGTAAAGATGGGGTGCAGCTTACTGCAACCTTATATTTACCTCCTGGTTATGATGCTGCGAAGGATGGACCTCTTCCAACATTGGTATGGTCTTACCCGGGAGAATTTAAGAGTAAAGATGCAGCTAGCCAAGTGCGTGGTTCCCCCAATGAATTTGCTGGAATAGGTTCAACATCACCGCTTTTATGGTTGGTTAGAGGGTTTGCTATATTGTCTGGACCAACTATTCCAATTATTGGAGAGGGAGATGAGGAGGCAAATGACAGGTATGTTGAACAGCTGGTGGCTAGTGCCGAGGCTGCAGTTGATGAAGTTGTCAGACGAGGGGTTACCCATCCAAATAAAATAGCTATTGGTGGTCACTCATATGGAGCATTCATGACTGCTAATCTTCTGGCACATGCACCTCATCTTTTTTCCTGTGGTATTGCTCGGTCAGGAGCTTATAACAGAACACTTACTCCATTTGGATTTCAGAATGAAGAGAGGACATTATGGGAAGCAACAAAGACGTATATTGATATGAGCCCGTTTATGTTAGCGAATCAAATAAAGAAGCCTATTTTGCTTGTCCACGGAGAAGAGGACAACAATTCTGGAACTCTCACAATGCAGTCAGAGCGGTTCTTCAATGCGCTGAAAGGACATGGTTCACTCTGTCGCCTTGTGCTTCTTCCCTATGAAAGCCATGGCTACTATGCCCGTGAAAGCATAATGCATTTGCTCTTTGAGACTGACAGATGGCTAGATAAGTTCTGTGTGAATTCCCCGGACAGTACTTCTGATGGCAAATCCTCTGGCGAAATGGAGAAAGCTGTTGGAGAGGATAAATTTGTTTTGGCTGGAAAGGGTGGAAGTACCAACCCAGAAGAAGATTCTGAACACAATTCTTTCTGTTCATTGCCAAGGTCATCTTTGTGA___CAAAATTTCTGTCTGCCATTTGGTGTCTGTTCAAGGTTTAATCTGAGAGAAATTTCTCAATTATTTATTTATTATATATTTTTAATGGCCATTCGTGTCAGATCACGTCAACAGAAGCATCTGTAGGCTGATGCCTCCTAGAATTTCAAACAAGTCTTGCATTGACAGAGGAATGTCATGAAATCACTTCTACACAATTGCTTAAGAATAAATGTAACCAGTGATAGTGATTTTGTCTACCCTTGTTTTAATTTCTCATCTGCACCATTTTAGTAAAGATGTTGTGTATGCGTTTACTTGGGAAGCTTCTATTAAGATATAGTCTTTTGTTGGACCTCCCAAGCCATAATGAAAAAGGTGTTTAATAAGAC

Fln Alignment:

Contig6317___MQSERFFNALKGHGSLCRLVLLPYESHGYYARESIMHLLFETDRWLDKFCVNSPDSTSDGKSSGEMEKAVGEDKFVLAGKGGSTNPEEDSEHNSFCSLPRSSL
B8LNQ5______________MQSERFFNALKGHGSLCRLVLLPFESHGYNSRESIMHLLFETDRWLDKFCVNSPDSISDPKSCGEMEQAAGEDKFVLVGKGGSTNPEEDSEHDSFYSMPRSAL

SNPs (tot: 61)

Position	A %	C %	G %	T %	Probability
1343			14	85	0.993533
1344	14	85			0.993533
1346	85	14			0.993533
1347	85			14	0.993533
1349	85		14		0.993533
1350	85		14		0.993533
1353			14	85	0.993533
1355		14		71	0.984337
1357	85	14			0.993533
1398	14		85		0.993533
1401	85			14	0.993533
1409	85		14		0.993533
1411		14		85	0.993533
1415		85	14		0.993533
1416	14			85	0.993533
1417	85	14			0.993533
1420			85	14	0.993533
1424	85			14	0.993533
1426	85			14	0.993533
1427		14	85		0.993533
1430	85			14	0.993533
1765	80		20		0.995493
1786		20		80	0.995493
1815	80		20		0.995493
1938	75		25		0.996473
1939			25	75	0.996473
2052		75		25	0.996473
2057		80		20	0.995493
2065		80		20	0.995493
2082	20		80		0.995493
2254	33		66		1.0
2260	20		80		0.995493
2262	20			80	0.995493
2263			80	20	0.995493
2264		40	40	20	1.0
2277	33		66		0.997452
2306	25		75		0.996473
2308			25	75	0.996473
2309			25	75	0.996473
2323	25		75		0.996473
2426	50		50		1.0
2498	33			66	0.997452
2501			66	33	0.997452
2543	25	75			0.996473
3027		16		83	0.994512
3040	12			87	0.992554
3041		12	87		0.992554
3042		87		12	0.992554
3113			85	14	0.993533
3159	14		85		0.993533
3161	28	71			1.0
3163		85		14	0.993533
3194			83	16	0.994512
3219		75	25		1.0
3252	86			13	0.999973
3261	10		90		0.90298
3262		10		90	0.90298
3263	10	90			0.90298
3265	90			10	0.90298
3290	87		12		0.992554
3291	12	87			0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
3079	3091	TTAT TTAT TTAT T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain