SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6314

Length: 1353 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6314

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Neurobeachin, putative n=1 Tax=Ricinus communis RepID=B9RZY6_RICCO	-	-	0.0	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%

Source	Gene names
Sma3	At5g18525; GSVIVT00019694001; OsI_01681; OsI_01684; OsJ_01553; P0537A05.24-1; P0537A05.24-2; POPTRDRAFT_724012; RCOM_1002950;

Source	GOs	Term	Type	Identity
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	BEACH domain	IPR000409	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3		IPR017442	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G18525.1	" protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases chr5:6146932-6153658 REVERSE LENGTH=1639"	52%
RefSeq	Arabidopsis thaliana	NP_974804.4	protein serine/threonine kinase [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002314992.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA87

Fln msg: your sequence is longer than subject: 262 - 69

Fln protein: MGSSIPSVSREGNEVVSGVNSTTLSGGILSAGFHGSLYTCMHCMEAEEKLVAGTGNGYLRFIDINAGRQLHLWRCEPLESSFSSLISAICCSGHRDKLESKKGLSSSTWIAAGFSSGHCRLLDLKSGTIIAHWRAHDGFITKLAALDEHLLISSSLDRTLRLWDLRRSRPTQLQVFRGHSDEVSSFSIWGHDMLSASGSKIGLSSLSRPYDQQQQQRIFPQKLYSSDRGLKNMSAISTINVLPFSRLFLVGTEDGYLKVCC*

Protein Length: 263

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTGCCAGGATATGGAAGAGTAGCTTCTTGTGATGGAACAGTTCATGTTTGGAACAGTCAGACAGGCAAACGAATTTCAATATTTTCTGAGCCTTCAGAAACTACTTCTCCTTCT_-_ATGGGCTCTAGCATACCTTCAGTGTCTAGGGAGGGTAATGAAGTTGTAAGTGGAGTAAACAGTACAACACTATCTGGAGGTATACTCTCTGCTGGATTTCATGGAAGCTTGTATACTTGTATGCATTGCATGGAGGCCGAAGAAAAGCTTGTTGCTGGCACTGGTAACGGTTACTTAAGGTTTATTGATATTAATGCTGGTCGCCAACTTCATCTATGGCGATGTGAGCCTTTGGAGTCTTCATTTTCTTCTTTAATTTCTGCTATTTGCTGTTCTGGGCATCGAGATAAACTTGAAAGCAAGAAAGGATTATCCAGCTCTACTTGGATAGCTGCTGGTTTCAGTTCAGGGCATTGTAGATTGCTTGATCTAAAGAGTGGGACCATTATTGCACATTGGCGGGCTCATGATGGTTTCATCACCAAGCTGGCTGCATTGGATGAACATTTGTTAATTTCAAGCTCTCTTGACAGAACTTTGCGTCTTTGGGACTTGAGAAGAAGCCGACCTACCCAATTGCAGGTCTTTAGGGGACATTCGGATGAAGTTTCTAGCTTTTCTATTTGGGGTCATGATATGCTTTCTGCTTCTGGAAGTAAGATTGGGCTTTCTTCTCTCTCCAGACCATATGATCAGCAGCAGCAACAACGCATTTTTCCTCAGAAGTTGTATTCCTCAGACCGTGGATTGAAGAACATGTCAGCTATATCAACGATAAATGTTCTTCCTTTCTCTCGACTATTCCTTGTAGGAACTGAAGATGGTTACCTGAAAGTTTGTTGCTAA___TCTTACTGATGGAAAATGATTGAATAGCATGGAAGACCTTGGATATGCCAATTGGATTTTGGAAATAAATGGTCTCTGATTATGTTGGCTGGTCCACTGTTAGAATAAATAAACAAGGGCTGTTGATGTATACATCCAAACATTTGTGCACTTAAAGGGTGTATCCATGAGTAGTAAGAAATCCTTCCTTCGGTGATTACGTGATGGAATTGATTTTGTTGTATAAGCAACCTTGAACTATGTTTTGGGTACCAAGAGACGACTATTATGTTTTGACTGAAAGGGTAATATTGTTTAGCTGCATCGTTCAGTCAGTTTGGCAACCATGAATGCATAATATTCTTGATGTAAATGGCTCAGAAAACTGTATCATGTAATATAATCATTTATTTATATTTCTGAAGTTGCTTATGGAGGCAATTAAAGT

Fln Alignment:

Contig6314___MLSASGSKIGLSSLSRPYDQQQQQRIFPQKLYSSDRGLKNMSAISTINVLPFSRLFLVGTEDGYLKVCC
D5AA87______________MLSASGSKIGLSSLSRPYDQEQQQRILPQKLYSSDRGLKNLSAISTINVLPFSRLFLVGTEDGYLKVCC

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
296		20		80	0.995493
362	88			11	0.923564
363		11		88	0.923564
373			12	87	0.992554
375	12	12	75		0.975346
376	87			12	0.992554
380		14		85	0.993533
407	12			87	0.992554
411			12	87	0.992554
459	14			85	0.993533
655	50		50		1.0
672	20		80		0.995493
768			20	80	0.995493
771		20	80		0.995493
773			20	80	0.995493
785	80		20		0.995493
787	71		28		1.0
788	71			28	1.0
791		66	33		1.0
793		33		66	1.0
794		33		66	1.0
797			33	66	1.0
798		66	33		1.0
801		66	33		1.0
802	66			33	1.0
803		33	66		1.0
805	66			33	1.0
806		33	66		1.0
807	33	16		50	1.0
885	12	87			0.992554
887			25	75	1.0
889		12		87	0.992554
890	87			12	0.992554
892			87	12	0.992554
893	87	12			0.992554
897	12		87		0.992554
950	62		37		1.0
953	10		90		0.90298
1000		10		90	0.90298
1185			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain