SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6311

Length: 2683 nt

UniGene Fasta

>sp_v3.0_unigene6311
TTGCTTACCAATTAAAAATTAATACACATCAACAATGATTTTGCCATCATATGAATATTATCAATGCATTGCATTCCATGGCCCCTCTTCTGCCTTGTCGATTGGATTTAGGGTGGATCCGATGATCTGGTGCGCCACGGGATTTTAGGAGGTTTCCAATCATGCCTTTAAAATAATTATGGCGGTACCACCGAGTCTTTGCGATTTGTTTCTGAGCATCCAGGAACTCTACCGCAATGGTTAGCCAGATATGTCAGTAAAAACAAGCATTGAGAAGAAGTTCTCTTCGAGTGTATAGCATTTCCAATTTTGACAGTTTTATCTTGGGTGAAGAGCTTCTCCTCTGGCATCTGACTTTTCACAAGCTTCTTGGTTCTTTGTCTATACATTGCGGCTGATATTAGGCTTTTTGTTTTTCTCTTCCATCAAGTTCAATGGGATCGAGGTTCCCTTCACACCAGCTCAGCAATGGGCTATATGTTTCAGGCCGACCTGAGCAGTATAAGGAAAGACAACCTACCATGAGCTCCACAGCCATGCCTTACACTGGAGGTGACATTAAGAGGTCTGGGGAGCTTGGAAAAATGTTTGATATTCCCGTGGACAATTTGAAGTCGAAAAAATCTGGACCTGTTGGGAATGCCCCCATGAGGACTGGATCATTTGGTGGGGCTGCATCACATTCGGGGCCTCTCCCATCAAACCCTGGATCACGGTCTAACTTTTCAATATCAGGACCTGTATCATCTGTAGTTCCAGGTTCTGTGCCAGGAACAAGTTCAGCAAGGCAAAAATCCAACTCAGGACCACTCTCTAGGAATGGAGAATCTGTTAAGAAGACTTCTGGTCCTCTTTCTGGAGGGGTCCCAACAGCTTCCCGACAAAATTCTGGGCCTCTTGCCCCTTCACTACCTGCAACTGGGCTCATTACTTCTGGTCCGATTTCTTCAGGTCCTCTCAATTCCTCTGGAGCACCTAGAAAAGTATCTGGGCCTTTGGATTCATCTGCATCGGCTAAGCTGCATAGTGTATCTATGGTAAACAGTCAGTCTGTCACCAATCTCAGCCATGATCCAGGATATTCCTTCAAGAGAAACTACCCCAGAGTGATCCTTTGGACTGTTATTCCACTTTTTTTTGTGGGTTTCATAGCTGGGGGCTTCATTCTGGCGGCGGTTCGGAATGCAATTTTGCTTGTTGTAGTGGTGGTTCTCTTTTTGGCTGTCACAGTGCTTGTGATGTGGAACACTTGGTGGGGAAAGAGGGCAGTTACAGGGTTCGTGTCAGGATATCCACATGCAGAGCTGAGAACGGCAAAAGATGGGCAGTACGTCAAGGTCTCCGGGGTTGTCACATGTGGAGGTGTTCCACTTGAATCTTCATATCAAAGGGTTTCTAGATGTGTGTATACATCTACAGGTCTATATGAGTACAGAGGATGGGATTCAAAGGCTGCAAATGCTAACCATCGACATTTTACATGGGGGCTGAGATACTTAGAGAGGCATATTGTGGATTTCTACATATCAGACTTTCAATCAGGCTTAAGAGCATTGGTAAAAGTTGGATATGGTGCAAGAGTTACACCGTATGTGGACGAGAGTACTATCATCGACGTAAACAAAAATATCCGGGATCTACCGTCAAACTTTATACGATGGCTCGGGGAAAGAAATCTTTCCAGTGATGATCGTGTAATGCGTCTGAAAGAAGGTTATATCAAAGAAGGAAGTACAGTAAGTGTCATGGGAGTGGTTCAGCGAAATGACAGTGTTCTAATGATTGTTCCTCCCCCAGAACCAGTGTCTACTGGCTGCCAATGGGGAAAGTTCCTCCTACCAGCTAGCCTTGAAGGAATTATTTTGAAATGTGAAGATGCTTCTTCAAGGGCTGATACTATACACGTGTAGCACTTACTGAGCTATATTTTACCTGGCTTCATGGTTGAAAAATTACTGATAGGAGTTTACTATCTCTAGTTTTTTTCTTCAAGTACTTAAAAGGTCTTCGCTTCTTCAAAATGGGAATTTTATTCGTCATTATATTTGATAAGAAGGCATTGTCAAAGAGCTCAGGCATTGACCACATTGAGAATGTTTTATAAAGAACCTAGAAGATGGCACAGAGTTTTGGTATCTTCGAAGATTGCTTTGATGGGAATGTAATGCTTTTATACTATCAGTATTTGAGGTGGGTTATCTTACTGCCGGTGATAACATCAAAATTTAGGCGAAAGATGAAAGCTGATAAATACAGGTGGTACAGAAGCTCATTACCTATATATCTACTTGAACATTGGTTGTTTATCCCACCAGGAAAAAAGGCTGTGTCCTCTTCAACTTCGTATTCATGCATTGGATTGCAATGTGTTTTGTACAAGCTAATTATCATGTTTTTACAAATTTCATGTATTTCCTGATGTGCGGGAACTGCTGGACTCGTAGAGGTTGTACGCTTACTGCAAAAGCGTCCATTATATGTAATTTGTGATTAATGTTGTAAATAAAGCATAAGGGTCAAGTTCTACTGTAGGGTGAAATGTCTTTTTGTATGATATGTTTAGATTCGAAACTATTCCTACCAATAACCTGAATCATTGTTTTGGTCATTATGAAGTTTGTTCTTATTGACTTTTCTTTTGTAACTGATGCCTATTAAACAGTCTTTGATTTTAGTTCGTAAC

Ace file of the UniGene sp_v3.0_unigene6311

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin-specific protease family C19-related protein [Arabidopsis thaliana] sp\|Q9FZ45.1\|Y1686_ARATH RecName: Full=Uncharacterized membrane protein At1g16860 gb\|AAF99847.1\|AC051629_14 Unknown protein [Arabidopsis thaliana] gb\|AAK92824.1\| unknown protein	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%

Source	Gene names
Sma3	AT4g22290; At1g16860; At1g78880; At4g22290; F6I1.14; F9K20.7; GSVIVT00006797001; GSVIVT00011719001; GSVIVT00025194001; GSVIVT00026134001; OSIGBa0113I13.4; OSJNBa0035M09.9; OSJNBa0038P10.32; OSJNBb0103I08.7; Os04g0541900; Os04g0606500; Os08g0230200; OsI_17

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	Zinc finger, UBP-type	IPR001607	-	-
Sma3	Pentaxin	IPR001759	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G16860.1	Ubiquitin-specific protease family C19-related protein chr1:5768280-5770183 FORWARD LENGTH=474	63%
RefSeq	Arabidopsis thaliana	NP_564009.1	Ubiquitin-specific protease family C19-related protein [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002310930.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR84

Fln msg: your sequence is shorter than subject: 492 - 510

Fln protein: MGSRFPSHQLSNGLYVSGRPEQYKERQPTMSSTAMPYTGGDIKRSGELGKMFDIPVDNLKSKKSGPVGNAPMRTGSFGGAASHSGPLPSNPGSRSNFSISGPVSSVVPGSVPGTSSARQKSNSGPLSRNGESVKKTSGPLSGGVPTASRQNSGPLAPSLPATGLITSGPISSGPLNSSGAPRKVSGPLDSSASAKLHSVSMVNSQSVTNLSHDPGYSFKRNYPRVILWTVIPLFFVGFIAGGFILAAVRNAILLVVVVVLFLAVTVLVMWNTWWGKRAVTGFVSGYPHAELRTAKDGQYVKVSGVVTCGGVPLESSYQRVSRCVYTSTGLYEYRGWDSKAANANHRHFTWGLRYLERHIVDFYISDFQSGLRALVKVGYGARVTPYVDESTIIDVNKNIRDLPSNFIRWLGERNLSSDDRVMRLKEGYIKEGSTVSVMGVVQRNDSVLMIVPPPEPVSTGCQWGKFLLPASLEGIILKCEDASSRADTIHV*

Protein Length: 493

Fln nts: TTGCTTACCAATTAAAAATTAATACACATCAACAATGATTTTGCCATCATATGAATATTATCAATGCATTGCATTCCATGGCCCCTCTTCTGCCTTGTCGATTGGATTTAGGGTGGATCCGATGATCTGGTGCGCCACGGGATTTTAGGAGGTTTCCAATCATGCCTTTAAAATAATTATGGCGGTACCACCGAGTCTTTGCGATTTGTTTCTGAGCATCCAGGAACTCTACCGCAATGGTTAGCCAGATATGTCAGTAAAAACAAGCATTGAGAAGAAGTTCTCTTCGAGTGTATAGCATTTCCAATTTTGACAGTTTTATCTTGGGTGAAGAGCTTCTCCTCTGGCATCTGACTTTTCACAAGCTTCTTGGTTCTTTGTCTATACATTGCGGCTGATATTAGGCTTTTTGTTTTTCTCTTCCATCAAGTTCA_-_ATGGGATCGAGGTTCCCTTCACACCAGCTCAGCAATGGGCTATATGTTTCAGGCCGACCTGAGCAGTATAAGGAAAGACAACCTACCATGAGCTCCACAGCCATGCCTTACACTGGAGGTGACATTAAGAGGTCTGGGGAGCTTGGAAAAATGTTTGATATTCCCGTGGACAATTTGAAGTCGAAAAAATCTGGACCTGTTGGGAATGCCCCCATGAGGACTGGATCATTTGGTGGGGCTGCATCACATTCGGGGCCTCTCCCATCAAACCCTGGATCACGGTCTAACTTTTCAATATCAGGACCTGTATCATCTGTAGTTCCAGGTTCTGTGCCAGGAACAAGTTCAGCAAGGCAAAAATCCAACTCAGGACCACTCTCTAGGAATGGAGAATCTGTTAAGAAGACTTCTGGTCCTCTTTCTGGAGGGGTCCCAACAGCTTCCCGACAAAATTCTGGGCCTCTTGCCCCTTCACTACCTGCAACTGGGCTCATTACTTCTGGTCCGATTTCTTCAGGTCCTCTCAATTCCTCTGGAGCACCTAGAAAAGTATCTGGGCCTTTGGATTCATCTGCATCGGCTAAGCTGCATAGTGTATCTATGGTAAACAGTCAGTCTGTCACCAATCTCAGCCATGATCCAGGATATTCCTTCAAGAGAAACTACCCCAGAGTGATCCTTTGGACTGTTATTCCACTTTTTTTTGTGGGTTTCATAGCTGGGGGCTTCATTCTGGCGGCGGTTCGGAATGCAATTTTGCTTGTTGTAGTGGTGGTTCTCTTTTTGGCTGTCACAGTGCTTGTGATGTGGAACACTTGGTGGGGAAAGAGGGCAGTTACAGGGTTCGTGTCAGGATATCCACATGCAGAGCTGAGAACGGCAAAAGATGGGCAGTACGTCAAGGTCTCCGGGGTTGTCACATGTGGAGGTGTTCCACTTGAATCTTCATATCAAAGGGTTTCTAGATGTGTGTATACATCTACAGGTCTATATGAGTACAGAGGATGGGATTCAAAGGCTGCAAATGCTAACCATCGACATTTTACATGGGGGCTGAGATACTTAGAGAGGCATATTGTGGATTTCTACATATCAGACTTTCAATCAGGCTTAAGAGCATTGGTAAAAGTTGGATATGGTGCAAGAGTTACACCGTATGTGGACGAGAGTACTATCATCGACGTAAACAAAAATATCCGGGATCTACCGTCAAACTTTATACGATGGCTCGGGGAAAGAAATCTTTCCAGTGATGATCGTGTAATGCGTCTGAAAGAAGGTTATATCAAAGAAGGAAGTACAGTAAGTGTCATGGGAGTGGTTCAGCGAAATGACAGTGTTCTAATGATTGTTCCTCCCCCAGAACCAGTGTCTACTGGCTGCCAATGGGGAAAGTTCCTCCTACCAGCTAGCCTTGAAGGAATTATTTTGAAATGTGAAGATGCTTCTTCAAGGGCTGATACTATACACGTGTAG___CACTTACTGAGCTATATTTTACCTGGCTTCATGGTTGAAAAATTACTGATAGGAGTTTACTATCTCTAGTTTTTTTCTTCAAGTACTTAAAAGGTCTTCGCTTCTTCAAAATGGGAATTTTATTCGTCATTATATTTGATAAGAAGGCATTGTCAAAGAGCTCAGGCATTGACCACATTGAGAATGTTTTATAAAGAACCTAGAAGATGGCACAGAGTTTTGGTATCTTCGAAGATTGCTTTGATGGGAATGTAATGCTTTTATACTATCAGTATTTGAGGTGGGTTATCTTACTGCCGGTGATAACATCAAAATTTAGGCGAAAGATGAAAGCTGATAAATACAGGTGGTACAGAAGCTCATTACCTATATATCTACTTGAACATTGGTTGTTTATCCCACCAGGAAAAAAGGCTGTGTCCTCTTCAACTTCGTATTCATGCATTGGATTGCAATGTGTTTTGTACAAGCTAATTATCATGTTTTTACAAATTTCATGTATTTCCTGATGTGCGGGAACTGCTGGACTCGTAGAGGTTGTACGCTTACTGCAAAAGCGTCCATTATATGTAATTTGTGATTAATGTTGTAAATAAAGCATAAGGGTCAAGTTCTACTGTAGGGTGAAATGTCTTTTTGTATGATATGTTTAGATTCGAAACTATTCCTACCAATAACCTGAATCATTGTTTTGGTCATTATGAAGTTTGTTCTTATTGACTTTTCTTTTGTAACTGATGCCTATTAAACAGTCTTTGATTTTAGTTCGTAAC

Fln Alignment:

Contig6311___SRFPSHQLSNGLYVSGRPEQYKERQPTMSSTAMPYTGGDIKRSGELGKMFDIPVDNL-KSKKSGPVGNAPMRTGSFGGAASHSGPL--------------PSNPGSRSNFXXXXXXXXXXXXXXXXXXXARQKSNSGPLSRNGE-----------SVKKTSGPLSGGVPTASRQNSGPLAPSLPATGLITSGPISSGPLNSSGAPRKV-SGPLDSSASAKLHSVSMVNSQSVTNLSHDPGYSFKRNYPRVILWTVIPLFFVGFIAGGFIXXXXXXXXXXXXXXXXXXXXXXXXMWNTWWGKRAVTGFVSGYPHAELRTAKDGQYVKVSGVVTCGGVPLESSYQRVSRCVYTSTGLYEYRGWDSKAANANHRHFTWGLRYLERHIVDFYISDFQSGLRALVKVGYGARVTPYVDESTIIDVNKNIRDLPSNFIRWLGERNLSSDDRVMRLKEGYIKEGSTVSVMGVVQRNDSVLMIVPPPEPVSTGCQWGKFLLPASLEGIILKCEDAS
B8LR84______________SRISAHQLSNGLYVSGRPEQYKDKQPTMSSTAVPYTGGDIKKSGELGKMFDIPVESTNKMKKSGSFQKAPAQ----GHGTSNSGPLTSGGAPRSAFSASGPINPGGISRQSTGAGNSQGSKSGPLSGNLGRQISQSGPLNRSGDMAVGPNPKAAPSSGKNSGPQSSA-PTIVRTNSGNL---LPATGLITSGPISSGPLSSSGALKKTTSGPLDPSG-APVKIVSINQNQAVSNLSNAEEYSFQKGFPKIILWMVILVFIMGFIAGGFLVATVHNAIFLIIIGSLFSVICFLFTWNICWGKRALLNFLASNKDADLRNARDGQYVKVTGVVTCGSVPLETSYQRVNRCIYSSTGLYEYRGWKAKPARVGHRLFTWGLRYLERHVAEFYISDFQSGLRALVKAGYGAHVTPCVEESTIVDIGPKNKDLPSGFVRWLAERNLSGDDRVMRLKEGHIKEGSTVTVMGVVQRHENVLMIVPPRERVTTGCQLGKFLLPGNVEGLIIACNETS

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
528		14		85	0.993533
546	85		14		0.993533
711			42	57	1.0
735			87	12	0.992554
736			87	12	0.992554
824	28		71		1.0
863			83	16	0.994512
1175			66	33	1.0
2016			33	66	0.997452
2049	33			66	0.997452
2050		33	66		0.997452
2053	66			33	0.997452
2540	88	11			0.923564
2547		12		87	0.992554
2548	12			87	0.992554
2614		33		66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain