SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6306

Length: 4903 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene6306
GCCTAACCTCGGAGCTCTGAAAGAGGGACAAGGTAAAAGGAATTCAGCCGTGAAGGAAGTCCAACTCCGTCATTGAAGGATCGGGGAGATCGACAGGCGCAACGTCCTGATCATGGGCTGCTTGTATCGTTCGAGGATGTCTTTAATGGCGTTGATACTGATCCAGGTAATTATTATGATGCAAGCTGTCCATGGAATTTTATTATATCCAAATATGCTTAGAATATCAAATTCTTCATCAGAAAAACATGGTAAAGAATACTGCGCCATGTATGGCATTTGCGGAAAACGCGAGGATGGAAAAGTTCTAAATTGCCCATATTCTGTACCAGCTACGAAACCTAGTAAGACACTCTCTTCAAAGATTCAGAGTCTCTGCCCAACAATTACAGGGAATGTTTGTTGCACATCTGATCAATTTGATATTTTACGTCAACAAGTGCAGCAGGCCATTCCCTTTCTTGTTGGCTGCCCCGCCTGCCTACGAAACTTTTTGAATCTTTTTTGCGAGATGTCATGTTCACCTAATCAAAGCCTTTTTATGAATGTTACATCCATTTCTCAGGAAAACCATAACCATAATTCAACTGTTGATGGGATTGCCTTGTATGTAACGGATACTTTTGGTGAGGGGTTATTCAACTCTTGTAAGGAGGTTAAATTTGGGGCAATGAATACTCGGGCAATTGACTTTTTGGGAGGAGGTGCGAGAGACTTTAGAGAATGGTTTGCATTTCTTGGCCGACAGGCAGAGCTCGATGAACCTGGGTCACCATATTCAATCGATTTCATATCAACAGTCCCACCATCTTCTTCCATGGAGCCAATGAATGTATCTGTGTTTTCATGTGGAGATACTGTATTGGGTTGTTCTTGCGGGGATTGCCCTTCCTCAAGTATCTGTTCTGACTCGTTGCCTGTTCCTGTACCACATAAGAATGGTTCCTGCTCTATTCGCCTTGGTTCTGCTAAGGTGAAATGTGTAGATTTTGCAATGGGTATAGTGTACGTTGTACTTGTCACTCTCATATTTGGTGGGGGTTTCCTATGCAAAACTGGAAAATCCACCAGGGCCTCACTTAGCATGAGGCCCTTATTGCAAAGTACTGAAGAAGAAGAAAGTGAACTTACTTGTGTTAGCAAAAGTAAAGATATGACCCTTCCTGCCCAGGGACACGAAGAGGTGACTATGCCAAAAAAGGGAACACGTTTGCCATTTATCCAATATTATATCTCTAAATTCTATAGGAGTCATGGAGTGTTTGTTGCTACACATCCAAGTCTTGTTTTCGGAATCTCGATTGCAGTTGTTCTGTTGTTGTGTATGGGGTTACTCCATTTAGAAGTGGAAACAAGGCCTGAAAAGCTGTGGGTTGGTCCCGGAAGCAAGGCAGCAGAAGAAAAAGAGTTCTTTGACACCCACTTGTCTCCTTTCTATAGAATAGAACAGCTTATCTTGGCTACTATTCCTCTTTCAGAAGATAATCCAGCTCCAAGTATTGTGACAGATAAGAACATCAAGTTGTTATTTGAAATGCAGACAAAGGTTGATGGAATTCGTGGAAACTACTCTGGATCATTGGTATCTCTAAAGGATATATGCATGAAGCCGGTTGGTGATGAGTGTGCTAGTCAAACTGTTTTACAATACTATAAAATGAAACCAGAACTGTTTGAAGATTATGAAGGGTCTTCACATGCGTTGTTTTGCTTTGAGCATTACACATCTTCGGAGCCATGCTTGAGTTCATATCATGCTCCTGTTGACCCAAGCACAATATTAGGGGGTTACAAGGGAAGCAACTATTCACAGGCTACTGCATTTGTTATCACATATCCTGTCAATAATGCTGTGGACAAGACAGGACATGAAAATGGAAAAGCTTTAGCATGGGAGAATTCTTTCATTCATTTAGTGAAAGAAGAGCTTATTCCAATGGCAAAGTTGCACAATCTTACTCTTGCATTTTCTGCAGAAAGTTCTGTGCAGGAAGAACTTAAGAGGGAGAGCACTGCTGATGTTGTAACCATATTGATCAGCTACATTGTCATGTTTGCCTACATATCAGTGACACTGGGTGATATTTCACCACACTTTTCACCTCTTTATGTTTCATCGAAGGTGTTACTTGGTTTGTCAGGGGTTCTTGTTGTTGTCCTTTCGGTACTTGGATCTATTGGGCTATTTAGTGCACTTGGAGTGAAGTCCACTTTAATTATTGTTGAAGTTATTCCATTTCTAGTGCTTGCGGTGGGAGTTGACAATATGTGCATCTTAGTGCATGCACTTAAACGCCAGCCAGTCGAATTGGCCTTGGAAGAACGAGTGGGAAACACACTTGCTGAAGTGGGGCCATCTATAACACTTTCAACCCTTTCAGAGGTTGTGGCATTTGCAGTTGGAAGTTTCATCCCTATGCCTGCGTGTCGAGTGTTCTCGATGTTTGCAGCTCTTGCGGTGTTAGTGGACTTCTTACTGCAAGTGACTGCATTTGTTTCTCTTATGACTTTTGATTTGATAAGAACAGAAGGAAACAGAGTTGATTGCTTTCCTTGCATTAGAGTTGGTCCATCAACAACTGAACTTGAACATGATAATATGGGCAGGAGGCACCAAAAACCTGGCCTTTTGGTGCAGTACATGAAGAATATCCATGCACCTGTACTAAGCATACCAGCAGTGAAAGTTGCAGTCCTATTGGTGTTCAGTGGTTTTGCTTTTGCAAGCATTGCATTAACTACAAGGCTTCAACCAGGTTTAGAGCAACAAGTGGTACTTCCAAGAGACTCTTATCTCCAGGGCTATTTCAATAACATATCTGAGTACCTTCGAGTTGGACCTCCGCTTTACTTTGTTTTAAAAAACTACAATTACAGCTTGGAATCAAACAACACAAATTTATTGTGCTCTATCAGTGGATGTGAGTCAAAGTCTTTATTGAATGAGATATCAAGGGCTGCTTTAACACCAGAGTCTAGCTACATTGCAAGTCCAGCCGCATCTTGGCTGGATGACTTTCTTGTATGGTTATCACCAGAAGCATTTGGGTGCTGCCGTAAATTTCCCAATGGGACCTACTGTCCTCCTGATGATCAGCCGCCTTGCTGTGCATCTGGAGATGTCTCCTGTGGAATAAGTGAGATTTGTCAGGACTGCACAACGTGCTTCTTACATTCAGATCTGATTGGAGACCGCCCATCTACAACACAATTCAGAGAGAAACTACCATGGTTTTTGACTGCATTGCCATCTGCAGATTGTGCAAAAGGGGGTTATGGTGCTTACACCAATAGTGTTGATCTCAAAGGATATGAGAATGGAGTAATTCAAGCATCAGAATTCCGTACATATCACACGCCCTTAAACAAACAGAGAGATTTTGTAAATGCAATGAAGGCTGCAAGGGAGTTTGCTGCAAGAGTTTCAGATTCTCTAAAGATTTCAGTCTACCCATACTCAGTGTTCTATATTTTCTTCGAGCAATACTTGGACATTTGGAGGACAACATTGATTAATCTTTCAGTTGCACTTGGAGCTGTGTTTATCGTTTGTGTTGTCATTACTTCCAGTTTATGGCTTTCAGCAATAATTTTGCTCGTACTGGCAATGATTGTACTGGATATCATGGGTTTGATGGCACTGCTGAGTATTCAATTAAATGCAATTTCTGTGGTGAATCTTGTAATGTCAATTGGTATCGCAGTAGAGTTCTGTGTCCACATTACCCATGCATTCTCTGTGAGTGAAGGAGACAGGGCACAGCGCTCAAAAGAAGCACTTACAACCATGGGAGCTTCTGTTTTCAGCGGAATAACAATTACAAAATTTGTTGGTGTGCTTGTACTATGCTTTGCACGATCAGAGATATTTGAGGTCTACTATTTTCGAATGTACCTTGCTCTTGTGATACTTGGGTTCTTGCATGGTCTTATTTTTCTACCAGTGTTATTGAGTGTCTGTGGTCCTCCATCCATCAAGTCTGTGTTAGATAATGATGAGCATGACCAGTCTAGAACTCACCCAAATCAACATGATTTGCGATTGTATAAAATGGAAAGGGAATCCTCAGATTGATATTGAGTCTGACATAATCTTGTGCAAGTATTTCATCGAGTTAGGTTACTGAAAGGTGATACTCTTATTTGTAAATAGCTGCAGTGAGGCTGAACAGCCACAAACTTTATGCCCTCTTGAAGTTTGAGATTATATAAGAAAATGTATTCAATGCATTCATTGATCCAACAAGACATGACCAAGAAAAAGTGCAAATGGAAGTTAATAATCTTGATTACTTACCTATCGCTTGTAAATACAAGACATGGCGGCGAGGAACCTAATTGCCATAGAGCTATCTCTGCACTCTCAGATATATTCAAGACAGAATTTAGCTGCAGGTACTCGATTATGCACTGCTACACAAGGTACCTTTCCAAGATTACAATATACAATTGAGTGTGTGTTAGTAATCTCAAGCAAAAATGTTGGTGATATGATATGTTCATTTGCTAACTCACCTCACTGAATGTGTGCAATAAGATGTTTTCAGAAAAGATGGTAGTAAAACCATTTGAATGATAGTGGAAAAATAGCTGTCATATGACTAAATAAGGGTGAGATAAATATTGTCCACCACAGAGAGGATTCTGCATGGACGCTAACCTGTGGCCATATGTCATACGTGGTCTCACTTGTGCAATTATTTTGTGCGGTGCTTCACAACAGCTTCTTCTGTACACTGGTCATACATCCCGCAGTAGTAACCTTGCCATTATTTAGCATGCAGGTTGCTCTGATGTGGTTGCACGATGAACAATATATGAACTCCGCAGTAAATGACAAGGCTTCTTGCTATCTATATTTAATACCTTTTGCATATGGCTAGTTGCAACAAATAATGGCTCG

Ace file of the UniGene sp_v3.0_unigene6306 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Niemann-Pick C1 protein [Arabidopsis thaliana] gb\|AEE31919.1\| Niemann-Pick C1 protein [Arabidopsis thaliana]	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	67%
Sma3	Cholesterol transport protein	-	-	3.622e-09	-

Source	Gene names
Sma3	AT4g38350; F22I13.120; GSVIVT00002883001; GSVIVT00036266001; H0409D10.4; OSJNBb0078D11.11; OsI_16991; OsJ_15793; PHYPADRAFT_113528; PHYPADRAFT_132440; POPTRDRAFT_721264; POPTRDRAFT_818865; RCOM_0512970; RCOM_1601160; T8D8.3; VITISV_009389; VITISV_014157;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	hedgehog receptor activity	GO:0008158	Molecular Function	-
Sma3	cholesterol transport	GO:0030301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Sterol-sensing domain	IPR000731	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Patched	IPR003392	-	-
Sma3	Niemann-Pick C type protein	IPR004765	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G38350.2	Patched family protein chr4:17958324-17966846 REVERSE LENGTH=1297	64%
RefSeq	Arabidopsis thaliana	NP_195548.6	Patched family protein [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002312804.1	cholesterol transport protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7UDA3

Fln msg: your sequence is longer than subject: 1321 - 1242

Fln protein: MGCLYRSRMSLMALILIQVIIMMQAVHGILLYPNMLRISNSSSEKHGKEYCAMYGICGKREDGKVLNCPYSVPATKPSKTLSSKIQSLCPTITGNVCCTSDQFDILRQQVQQAIPFLVGCPACLRNFLNLFCEMSCSPNQSLFMNVTSISQENHNHNSTVDGIALYVTDTFGEGLFNSCKEVKFGAMNTRAIDFLGGGARDFREWFAFLGRQAELDEPGSPYSIDFISTVPPSSSMEPMNVSVFSCGDTVLGCSCGDCPSSSICSDSLPVPVPHKNGSCSIRLGSAKVKCVDFAMGIVYVVLVTLIFGGGFLCKTGKSTRASLSMRPLLQSTEEEESELTCVSKSKDMTLPAQGHEEVTMPKKGTRLPFIQYYISKFYRSHGVFVATHPSLVFGISIAVVLLLCMGLLHLEVETRPEKLWVGPGSKAAEEKEFFDTHLSPFYRIEQLILATIPLSEDNPAPSIVTDKNIKLLFEMQTKVDGIRGNYSGSLVSLKDICMKPVGDECASQTVLQYYKMKPELFEDYEGSSHALFCFEHYTSSEPCLSSYHAPVDPSTILGGYKGSNYSQATAFVITYPVNNAVDKTGHENGKALAWENSFIHLVKEELIPMAKLHNLTLAFSAESSVQEELKRESTADVVTILISYIVMFAYISVTLGDISPHFSPLYVSSKVLLGLSGVLVVVLSVLGSIGLFSALGVKSTLIIVEVIPFLVLAVGVDNMCILVHALKRQPVELALEERVGNTLAEVGPSITLSTLSEVVAFAVGSFIPMPACRVFSMFAALAVLVDFLLQVTAFVSLMTFDLIRTEGNRVDCFPCIRVGPSTTELEHDNMGRRHQKPGLLVQYMKNIHAPVLSIPAVKVAVLLVFSGFAFASIALTTRLQPGLEQQVVLPRDSYLQGYFNNISEYLRVGPPLYFVLKNYNYSLESNNTNLLCSISGCESKSLLNEISRAALTPESSYIASPAASWLDDFLVWLSPEAFGCCRKFPNGTYCPPDDQPPCCASGDVSCGISEICQDCTTCFLHSDLIGDRPSTTQFREKLPWFLTALPSADCAKGGYGAYTNSVDLKGYENGVIQASEFRTYHTPLNKQRDFVNAMKAAREFAARVSDSLKISVYPYSVFYIFFEQYLDIWRTTLINLSVALGAVFIVCVVITSSLWLSAIILLVLAMIVLDIMGLMALLSIQLNAISVVNLVMSIGIAVEFCVHITHAFSVSEGDRAQRSKEALTTMGASVFSGITITKFVGVLVLCFARSEIFEVYYFRMYLALVILGFLHGLIFLPVLLSVCGPPSIKSVLDNDEHDQSRTHPNQHDLRLYKMERESSD*

Protein Length: 1322

Fln nts: GCCTAACCTCGGAGCTCTGAAAGAGGGACAAGGTAAAAGGAATTCAGCCGTGAAGGAAGTCCAACTCCGTCATTGAAGGATCGGGGAGATCGACAGGCGCAACGTCCTGATC_-_ATGGGCTGCTTGTATCGTTCGAGGATGTCTTTAATGGCGTTGATACTGATCCAGGTAATTATTATGATGCAAGCTGTCCATGGAATTTTATTATATCCAAATATGCTTAGAATATCAAATTCTTCATCAGAAAAACATGGTAAAGAATACTGCGCCATGTATGGCATTTGCGGAAAACGCGAGGATGGAAAAGTTCTAAATTGCCCATATTCTGTACCAGCTACGAAACCTAGTAAGACACTCTCTTCAAAGATTCAGAGTCTCTGCCCAACAATTACAGGGAATGTTTGTTGCACATCTGATCAATTTGATATTTTACGTCAACAAGTGCAGCAGGCCATTCCCTTTCTTGTTGGCTGCCCCGCCTGCCTACGAAACTTTTTGAATCTTTTTTGCGAGATGTCATGTTCACCTAATCAAAGCCTTTTTATGAATGTTACATCCATTTCTCAGGAAAACCATAACCATAATTCAACTGTTGATGGGATTGCCTTGTATGTAACGGATACTTTTGGTGAGGGGTTATTCAACTCTTGTAAGGAGGTTAAATTTGGGGCAATGAATACTCGGGCAATTGACTTTTTGGGAGGAGGTGCGAGAGACTTTAGAGAATGGTTTGCATTTCTTGGCCGACAGGCAGAGCTCGATGAACCTGGGTCACCATATTCAATCGATTTCATATCAACAGTCCCACCATCTTCTTCCATGGAGCCAATGAATGTATCTGTGTTTTCATGTGGAGATACTGTATTGGGTTGTTCTTGCGGGGATTGCCCTTCCTCAAGTATCTGTTCTGACTCGTTGCCTGTTCCTGTACCACATAAGAATGGTTCCTGCTCTATTCGCCTTGGTTCTGCTAAGGTGAAATGTGTAGATTTTGCAATGGGTATAGTGTACGTTGTACTTGTCACTCTCATATTTGGTGGGGGTTTCCTATGCAAAACTGGAAAATCCACCAGGGCCTCACTTAGCATGAGGCCCTTATTGCAAAGTACTGAAGAAGAAGAAAGTGAACTTACTTGTGTTAGCAAAAGTAAAGATATGACCCTTCCTGCCCAGGGACACGAAGAGGTGACTATGCCAAAAAAGGGAACACGTTTGCCATTTATCCAATATTATATCTCTAAATTCTATAGGAGTCATGGAGTGTTTGTTGCTACACATCCAAGTCTTGTTTTCGGAATCTCGATTGCAGTTGTTCTGTTGTTGTGTATGGGGTTACTCCATTTAGAAGTGGAAACAAGGCCTGAAAAGCTGTGGGTTGGTCCCGGAAGCAAGGCAGCAGAAGAAAAAGAGTTCTTTGACACCCACTTGTCTCCTTTCTATAGAATAGAACAGCTTATCTTGGCTACTATTCCTCTTTCAGAAGATAATCCAGCTCCAAGTATTGTGACAGATAAGAACATCAAGTTGTTATTTGAAATGCAGACAAAGGTTGATGGAATTCGTGGAAACTACTCTGGATCATTGGTATCTCTAAAGGATATATGCATGAAGCCGGTTGGTGATGAGTGTGCTAGTCAAACTGTTTTACAATACTATAAAATGAAACCAGAACTGTTTGAAGATTATGAAGGGTCTTCACATGCGTTGTTTTGCTTTGAGCATTACACATCTTCGGAGCCATGCTTGAGTTCATATCATGCTCCTGTTGACCCAAGCACAATATTAGGGGGTTACAAGGGAAGCAACTATTCACAGGCTACTGCATTTGTTATCACATATCCTGTCAATAATGCTGTGGACAAGACAGGACATGAAAATGGAAAAGCTTTAGCATGGGAGAATTCTTTCATTCATTTAGTGAAAGAAGAGCTTATTCCAATGGCAAAGTTGCACAATCTTACTCTTGCATTTTCTGCAGAAAGTTCTGTGCAGGAAGAACTTAAGAGGGAGAGCACTGCTGATGTTGTAACCATATTGATCAGCTACATTGTCATGTTTGCCTACATATCAGTGACACTGGGTGATATTTCACCACACTTTTCACCTCTTTATGTTTCATCGAAGGTGTTACTTGGTTTGTCAGGGGTTCTTGTTGTTGTCCTTTCGGTACTTGGATCTATTGGGCTATTTAGTGCACTTGGAGTGAAGTCCACTTTAATTATTGTTGAAGTTATTCCATTTCTAGTGCTTGCGGTGGGAGTTGACAATATGTGCATCTTAGTGCATGCACTTAAACGCCAGCCAGTCGAATTGGCCTTGGAAGAACGAGTGGGAAACACACTTGCTGAAGTGGGGCCATCTATAACACTTTCAACCCTTTCAGAGGTTGTGGCATTTGCAGTTGGAAGTTTCATCCCTATGCCTGCGTGTCGAGTGTTCTCGATGTTTGCAGCTCTTGCGGTGTTAGTGGACTTCTTACTGCAAGTGACTGCATTTGTTTCTCTTATGACTTTTGATTTGATAAGAACAGAAGGAAACAGAGTTGATTGCTTTCCTTGCATTAGAGTTGGTCCATCAACAACTGAACTTGAACATGATAATATGGGCAGGAGGCACCAAAAACCTGGCCTTTTGGTGCAGTACATGAAGAATATCCATGCACCTGTACTAAGCATACCAGCAGTGAAAGTTGCAGTCCTATTGGTGTTCAGTGGTTTTGCTTTTGCAAGCATTGCATTAACTACAAGGCTTCAACCAGGTTTAGAGCAACAAGTGGTACTTCCAAGAGACTCTTATCTCCAGGGCTATTTCAATAACATATCTGAGTACCTTCGAGTTGGACCTCCGCTTTACTTTGTTTTAAAAAACTACAATTACAGCTTGGAATCAAACAACACAAATTTATTGTGCTCTATCAGTGGATGTGAGTCAAAGTCTTTATTGAATGAGATATCAAGGGCTGCTTTAACACCAGAGTCTAGCTACATTGCAAGTCCAGCCGCATCTTGGCTGGATGACTTTCTTGTATGGTTATCACCAGAAGCATTTGGGTGCTGCCGTAAATTTCCCAATGGGACCTACTGTCCTCCTGATGATCAGCCGCCTTGCTGTGCATCTGGAGATGTCTCCTGTGGAATAAGTGAGATTTGTCAGGACTGCACAACGTGCTTCTTACATTCAGATCTGATTGGAGACCGCCCATCTACAACACAATTCAGAGAGAAACTACCATGGTTTTTGACTGCATTGCCATCTGCAGATTGTGCAAAAGGGGGTTATGGTGCTTACACCAATAGTGTTGATCTCAAAGGATATGAGAATGGAGTAATTCAAGCATCAGAATTCCGTACATATCACACGCCCTTAAACAAACAGAGAGATTTTGTAAATGCAATGAAGGCTGCAAGGGAGTTTGCTGCAAGAGTTTCAGATTCTCTAAAGATTTCAGTCTACCCATACTCAGTGTTCTATATTTTCTTCGAGCAATACTTGGACATTTGGAGGACAACATTGATTAATCTTTCAGTTGCACTTGGAGCTGTGTTTATCGTTTGTGTTGTCATTACTTCCAGTTTATGGCTTTCAGCAATAATTTTGCTCGTACTGGCAATGATTGTACTGGATATCATGGGTTTGATGGCACTGCTGAGTATTCAATTAAATGCAATTTCTGTGGTGAATCTTGTAATGTCAATTGGTATCGCAGTAGAGTTCTGTGTCCACATTACCCATGCATTCTCTGTGAGTGAAGGAGACAGGGCACAGCGCTCAAAAGAAGCACTTACAACCATGGGAGCTTCTGTTTTCAGCGGAATAACAATTACAAAATTTGTTGGTGTGCTTGTACTATGCTTTGCACGATCAGAGATATTTGAGGTCTACTATTTTCGAATGTACCTTGCTCTTGTGATACTTGGGTTCTTGCATGGTCTTATTTTTCTACCAGTGTTATTGAGTGTCTGTGGTCCTCCATCCATCAAGTCTGTGTTAGATAATGATGAGCATGACCAGTCTAGAACTCACCCAAATCAACATGATTTGCGATTGTATAAAATGGAAAGGGAATCCTCAGATTGA___TATTGAGTCTGACATAATCTTGTGCAAGTATTTCATCGAGTTAGGTTACTGAAAGGTGATACTCTTATTTGTAAATAGCTGCAGTGAGGCTGAACAGCCACAAACTTTATGCCCTCTTGAAGTTTGAGATTATATAAGAAAATGTATTCAATGCATTCATTGATCCAACAAGACATGACCAAGAAAAAGTGCAAATGGAAGTTAATAATCTTGATTACTTACCTATCGCTTGTAAATACAAGACATGGCGGCGAGGAACCTAATTGCCATAGAGCTATCTCTGCACTCTCAGATATATTCAAGACAGAATTTAGCTGCAGGTACTCGATTATGCACTGCTACACAAGGTACCTTTCCAAGATTACAATATACAATTGAGTGTGTGTTAGTAATCTCAAGCAAAAATGTTGGTGATATGATATGTTCATTTGCTAACTCACCTCACTGAATGTGTGCAATAAGATGTTTTCAGAAAAGATGGTAGTAAAACCATTTGAATGATAGTGGAAAAATAGCTGTCATATGACTAAATAAGGGTGAGATAAATATTGTCCACCACAGAGAGGATTCTGCATGGACGCTAACCTGTGGCCATATGTCATACGTGGTCTCACTTGTGCAATTATTTTGTGCGGTGCTTCACAACAGCTTCTTCTGTACACTGGTCATACATCCCGCAGTAGTAACCTTGCCATTATTTAGCATGCAGGTTGCTCTGATGTGGTTGCACGATGAACAATATATGAACTCCGCAGTAAATGACAAGGCTTCTTGCTATCTATATTTAATACCTTTTGCATATGGCTAGTTGCAACAAATAATGGCTCG

Fln Alignment:

Contig6306___MYGICGKREDGKVLNCPYSVPATKPSKTLSSKIQSLCPTITGNVCCTSDQFDILRQQVQQAIPFLVGCPACLRNFLNLFCEMSCSPNQSLFMNVTSISQENHNHNSTVDGIALYVTDTFGEGLFNSCKEVKFGAMNTRAIDFLGGGARDFREWFAFLGRQAELDEPGSPYSIDFISTVPPSSSMEPMNVSVFSCGDTVLGCSCGDCPSSSICSDSLPVPVPHKNGSCSIRLGSAKVKCVDFAMGIVYVVLVTLIFGGGFLCKTGKSTRASLSMRPXXXXXXXXXXXXTCVSKSKDMTLPAQGHEEVTMPKKGTRLPFIQYYISKFYRSHGVFVATHPSLVFGISIAVVXXXXXXXXXLEVETRPEKLWVGPGSKAAEEKEFFDTHLSPFYRIEQLILATIPLSEDNPAPSIVTDKNIKLLFEMQTKVDGIRGNYSGSLVSLKDICMKPVGDECASQTVLQYYKMKPELFEDYEGSSHALFCFEHYTSSEPCLSSYHAPVDPSTILGGYKGSNYSQATAFVITYPVNNAVDKTGHENGKALAWENSFIHLVKEELIPMAKLHNLTLAFSAESSVQEELKRESTADVVTILISYIVMFAYISVTLGDISPHFSPLYXXXXXXXXXXXXXXXXXXXXXXXXLFSALGVKSTLIIVEVIPFLVLAVGVDNMCILVHALKRQPVELALEERVGNTLAEVGPSITLSTLSEVVAFAVGSFIPMPACRVFSMXXXXXXXXXXXLQVTAFVSLMTFDLIRTEGNRVDCFPCIRVGPSTTELEHDNMGRRHQKPGLLVQYMKNIHAPVLSIPAVKVAVLLVFSGFAFASIALTTRLQPGLEQQVVLPRDSYLQGYFNNISEYLRVGPPLYFVLKNYNYSLESNNTNLLCSISGCESKSLLNEISRAALTPESSYIASPAASWLDDFLVWLSPEAFGCCRKFPNGTYCPPDDQPPCCASGDVSCGISEICQDCTTCFLHSDLIGDRPSTTQFREKLPWFLTALPSADCAKGGYGAYTNSVDLKGYENGVIQASEFRTYHTPLNKQRDFVNAMKAAREFAARVSDSLKISVYPYSVFYIFFEQYLDIWRTTLINLSVALGAVFIVCVVITSSLWLSXXXXXXXXXXXXXXMGLMALLSIQLNAISVVNLVMSIGIAVEFCVHITHAFSVSEGDRAQRSKEALTTMGASVFSGITITKFVGVLVLCFARSEIFEVYYFRMYLALVILGFLHGLIFLPVLLSVCGPPSIKSVLDNDEHDQSRTHP
D7UDA3______________MYDICGKRSDGKVLNCPYGSPSVKPDDLLSSKIQSMCPTISGNVCCTEAQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVNNN--LTVDGIEFIITDAFGEGLYNSCKDVKFGTMNTRAIDFIGAGAKTFKEWFAFIGTRAAPSVPGSPYAINFQPSIAESSGMKPMNVSTYSCGDNSLGCSCGDCPSASVCSGYAP-PSLHKEGSCSVRIGSLKAKCIEFSLAILYIILVTIFFGWGLFHRTRERNPAP-RMKPMLNVMDGSELHS--MNRPKDENLSSQMLEDVPQIRNGVQLSIVQGYMSNFYRRYGTWVARHPTIMLCSSLAIVLVLCLGLIRFKVETRPEKLWVGPGSKAAEEKQFFDSHLAPFYRIEQLVLATIP-DANGISPSIVTENNIKLLFEIQKKVDGLRANFSGSMISLTDICMKPLGQDCATQSVLQYFKMDSRNYDDYGGVQHVEYCFQHYTSADTCMSAFKAPLDPSTALGGFSGNNYSEASAFIVTYPVNNAIDKEGNETGKAVAWEKAFIQIVKDDLLPMMQSKNLTLSFSSESSIEEELKRESTADAITISISYLVMFAYISLTLGD-TPRLSSFYISSKIFLGLAGVMLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQPLELPLEGRISNALVEVGPSITLASLAEVLAFAVGTFIPMPACRVFSMFAALAVLLDFLLQVTAFVALIVFDFLRAEDRRIDCFPCIKISSSYAD---SDKGIGQRKPGLLARYMKEVHAPILSLWGVKLVVISVFVAFALASIALCTRIEPGLEQKIVLPRDSYLQGYFNNVSEYLRIGPPLYFVVKNYNYSSESRHTNQLCSISQCNSDSLLNEIARASLIPESSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPNDQPPCCASEDGSCYLNGLCKDCTTCFRHSDLYNDRPSTAQFREKLPWFLAALPSADCSKGGHGAYTSSVELKGFESGIIQASSFRTYHTPLNKQIDYVNSMRAAREFTSRVSDSLKIQIFPYSVFYMFFEQYLDIWRTALINLAIAIGAVFIVCLVITCSLWSSAIILLVLAMIVVDLMGVMAILNIQLNALSVVNLVMAVGIAVEFCVHITHAFSVSSGDRNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSMCGPPSRCVLIDKREDQPSPSSP

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
226	12		87		0.992554
303	12		87		0.992554
305		87	12		0.992554
385	10		90		0.90298
386		10		90	0.90298
387	10		90		0.90298
388	90			10	0.90298
389			90	10	0.90298
410	88		11		0.923564
411	11			88	0.923564
412		88	11		0.923564
413	88			11	0.923564
414			11	88	0.923564
423		88	11		0.923564
424	88		11		0.923564
426		11		88	0.923564
427	11			88	0.923564
428		11		88	0.923564
429			11	88	0.923564
430	11		88		0.923564
432			11	88	0.923564
524	14			85	0.999981
528	14			85	0.999981
529		7		78	0.999974
541	83	16			0.999991
542		16	83		0.999991
592	14			85	0.993533
595			16	83	0.994512
603	16		83		0.994512
606	87			12	0.992554
640	80	20			0.995493
642	20			80	0.995493
666	62		37		1.0
687	87	12			0.992554
688		12		87	0.992554
689		12		87	0.992554
690	12			87	0.992554
749	11	88			0.923564
751			88	11	0.923564
752		88	11		0.923564
769	18			81	0.999994
772		81	18		0.999994
773	81			18	0.999994
847		11		88	0.923564
848		11		88	0.923564
1049			62	37	1.0
1194	14		14		0.984337
1195			85	14	0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
3784	3795	TTC TTC TTC TTC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain