SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6275

Length: 1825 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene6275 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative growth-regulating factor 6 [Zea mays] gb\|ABQ01219.1\| putative growth-regulating factor 6 [Zea mays]	-	-	1.4013e-45	39%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	46%
Sma3	Growth-regulating factor	-	-	6.044e-23	-

Source	Gene names
Sma3	At2g06200; At3g13960; At3g52910; At3g52925; B0403H10-OSIGBa0105A11.9; F8J2_80; GRF; GRF1; GRF10; GRF12; GRF13; GRF14; GRF2; GRF3; GRF4; GRF5; GRF6; GRF7; GRF8; GRF9; GRL1; GRL3; GSVIVT00001040001; GSVIVT00013960001; GSVIVT00026258001; LOC_Os03g47140; LOC_

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	recombinase activity	GO:0000150	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	nuclease activity	GO:0004518	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	GO:0016818	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	DNA recombination	GO:0006310	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Extradiol ring-cleavage dioxygenase, class I /II	IPR000486	-	-
Sma3	Resolvase, holliday junction-type, YqgF-like	IPR005227	-	-
Sma3	Universal stress protein A	IPR006015	-	-
Sma3	UspA	IPR006016	-	-
Sma3	YqgF/RNase H-like domain	IPR006641	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	WRC	IPR014977	-	-
Sma3	Glutamine-Leucine-Glutamine, QLQ	IPR014978	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G13960.1	AtGRF5, GRF5 growth-regulating factor 5 chr3:4608526-4610160 FORWARD LENGTH=397	4.2039e-45	52%
RefSeq	Arabidopsis thaliana	NP_188012.2	growth-regulating factor 5 [Arabidopsis thaliana]	5.60519e-45	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HEC9

Fln msg: your sequence is longer than subject: 369 - 318

Fln protein: MHLMRMGGETMNYHSGIQMHGARPPFTPAQWQELEHQALIFKYMMAGIPVPPDLLIPIRKSLEAINAGLFHHSHHIHPNIPWSSPFQLGFAKNCDPEPGRCRRTDGKKWRCSKDAFPDSKYCERHMHRGRNRSRKPVETPASHSSSLSLSTASARNNSIPSITNNTQSHVPFATPYSTSRLAGAGIVPPPSSANSNSSSNNQFNTDVGSYSIPSKDYRYMKGDIDEHVFFSTEVSGTSRGLGIDSQSMLSSSVDSGWRSLMPSKVSPFSSQSSFPTDAATKQQHSFLTSSFGGVQDQPVNVKIEQQPLRHFFDEWPRSRDSSTLSWTELDEDRSNRSSSTTQLSISIPITSSDFSGSSNSRSPTRGCK*

Protein Length: 370

Fln nts: AATGTAGAAACTGCTGCCCATTTAAAGAATACCCCCTCTTCTGCACTTCTGATAAAAGACAGGCGACATGTTTCAGTAAAGCTGAACCCAATCACACGTTCTCTCAACGGCAGAAAATCCATTTCTGAGTCCTGGAGGTTGTTGTGCATTCTCAAGCTCAGCGGCAGCAGCAGCTTACAAGTGTTTTAGTCAATTACCATCGAATTAGTATGATTTGCCCGAAAGTAGTGGGGGTTTGTCTTGTGTCTTTTAGGGTTTCATAACTAAGAGGCAAAATTTAGTAATGCAATCGGGTGGTTTGAAAGGGTTTAGCATGATGTTATGGTAGAAGAGGGCCAGGAATGGTAATGAAATACCAGCTTCTACTAGGGTTTCCTGCATGGATCATTCTTGAATCCTTTCTACACATGTTGCCAACAGCGGCTGGAAGTAGAACAAGTCTCAAGTATATGCAGTGGGTTTTTTCAAGCAAAACAGGTTTGATTTGTAACAGCTAGAGATTA_-_ATGCATTTGATGCGTATGGGAGGAGAAACTATGAACTATCACTCTGGGATTCAAATGCACGGAGCTAGGCCTCCTTTCACTCCAGCACAATGGCAGGAACTGGAACACCAGGCATTGATCTTCAAGTATATGATGGCTGGAATCCCTGTGCCTCCTGATCTCCTTATTCCTATCAGGAAGAGCTTGGAGGCTATCAATGCCGGACTGTTTCATCATTCACATCATATTCATCCCAATATACCTTGGAGCTCTCCATTTCAGTTGGGCTTTGCCAAAAACTGTGACCCAGAACCTGGTAGATGCAGAAGAACAGATGGGAAAAAATGGCGTTGCTCAAAGGATGCATTTCCTGATTCAAAATACTGTGAACGCCACATGCACAGAGGCAGAAATCGTTCAAGAAAGCCTGTGGAAACACCCGCCTCTCACTCCTCATCCCTTAGTCTCTCAACAGCTAGTGCTCGCAATAATAGCATTCCATCGATCACAAACAATACACAGTCACATGTACCCTTCGCCACCCCCTATTCCACCTCTCGGCTTGCAGGAGCAGGAATAGTACCACCACCTTCTTCTGCCAACAGCAACAGCAGCAGCAACAACCAATTCAATACTGATGTAGGATCGTATTCAATCCCCAGCAAAGATTACAGGTATATGAAAGGAGACATCGATGAGCATGTGTTCTTCTCCACTGAAGTTTCTGGGACGTCTAGAGGTTTGGGTATCGATTCCCAGTCAATGCTCAGTTCATCTGTGGACAGTGGATGGCGTTCCTTGATGCCTTCAAAAGTGAGCCCATTCAGTTCCCAGTCCAGCTTCCCTACTGATGCTGCTACAAAGCAGCAACATTCCTTTTTAACCAGCAGTTTTGGAGGTGTGCAGGATCAGCCCGTGAATGTTAAAATTGAACAGCAGCCTCTGAGGCATTTTTTTGATGAGTGGCCAAGATCAAGGGATTCATCTACTCTTTCATGGACTGAATTGGATGAGGACAGATCCAATAGGAGCTCCTCCACTACCCAGCTTTCCATTTCTATTCCAATCACCTCTTCAGATTTCTCAGGATCCTCCAATTCCCGTTCTCCTACTCGTGGCTGCAAGTAA___GTATTAGTTCCTTTTATGTGATACAATCCATTATGCCCAAACATCATGTTAAACCCTAACAGTACTTTCTATCTATATTAAAAAAACCCCAAGTATTCACAAATCACTTCTCACAAGTGGAGATCTGAACCTCAGTTTTCTAAACTATTTGGTTCTGTGTGACCTGCAGTTTCTACAATATAGTTTCCATTGATTGTATTAGATAGATTTTAGAT

Fln Alignment:

Contig6275___PFTPAQWQELEHQALIFKYMMAGIPVPPDLLIPIRKSLEAINAGLFHHSHHIHPNIPWSSPFQLGFAKNCDPEPGRCRRTDGKKWRCSKDAFPDSKYCERHMHRGRNRSRKPVETPXXXXXXXXXXXXXARNNSIPSITNNTQSHVPFATPYSTSRLAGAGIVXXXXXXXXXXXXXNQFNTDVGSYSIPSKDYRYMKG---DIDEHVFFSTEVSGTSRGLGIDXXXXXXXXXXSGWRSLMXXXXXXXXXXXXXPTDAATKQQHSFLTSSFGGVQDQPVNVKIEQQPLRHFFDEWPRSRDSSTLSWTELDEDRSNRSS-STTQLSISIPI
F6HEC9______________PFTVSQWQELEHQALIFKYLMAGLPVPPDLVLPIQKSFESMSSRFFHH-----PTMGYCS----FYGKKVDPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVESQTTTQSSSTVTSLTVTGGS--GSGAGTFQNLPLQNFNNPQGGPGSG------------TNQSQFHMEPIPYGIPNKDYRYLHGLKPEVGEHSFFS-EASGSNRGLQMDSPLDSTWPLMPSRVSSFPPSKSSENSIL-----QSDYPQHSFFSSEFASGE----VVKQEGQSLRPFFDEWPKTRD----SWSGLEEERSNQTSFSTTQLSISIPM

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
563	75		25		0.996473
599	80	20			0.995493
602	20	80			0.995493
616		14		85	0.993533
617	14	85			0.993533
618	14	85			0.993533
619		85	14		0.993533
840	20		80		0.995493
890	80			20	0.995493
892			80	20	0.995493
901		40	60		1.0
904		40	60		1.0
906	40		60		1.0
907	40		60		1.0
912		33		66	1.0
913	33			66	1.0
915		66	33		1.0
918	66		33		1.0
969	33			66	0.997452
970		33	66		0.997452
972	66			33	0.997452
1201		14		85	0.993533
1202		14		85	0.993533
1203	14		85		0.993533
1205	85			14	0.993533
1297		16	83		0.994512
1298	16			83	0.994512
1367	90	10			0.90298
1369	70			10	0.999998
1370		90		10	0.90298
1400		10		90	0.90298
1402	10	90			0.90298
1405			90	10	0.90298
1407	14	85			0.999981
1558	11	88			0.923564
1559	11	88			0.923564
1561		88	11		0.923564
1566	14			85	0.993533
1567		14		85	0.993533
1570			85	14	0.993533
1619		16		83	0.994512
1711	11		88		0.923564
1713			12	87	0.992554
1715			12	87	0.992554
1716	12			75	0.975346
1718	14			85	0.993533
1722	14		85		0.993533
1723	14			85	0.993533
1724			14	85	0.993533
1726	85			14	0.993533
1727		14	85		0.993533
1729		14	85		0.993533
1730	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain