SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6230

Length: 2402 nt

UniGene Fasta

>sp_v3.0_unigene6230
ATGGGGGTGTCCGTCCTCTCTGGGTCTGGGTCTGGGTCTGGGTCGAGCGAGGAGACGGGAATTGCCGTGTGTCCTGGAGGGGAGCAACCTGTTGGAAATGGAAATTGGCGGTTCTGATGAAATCGTTTCATCAAACGAGACAGATGGAGACGGAGAGGTTTATGTTAATTAATGAGACAGGCGAAAATGAGGAAGGAGGGCCTCTGACAGAGGTTCATGTTCTGTTTGACTATGAATAACTTGTTGGAAATGGCAATTGGCGGTTGTGTCCTTTCTGGGTCGAACCAGACTGATGGACACAGAGAGGTTTATGTTAATTAATGAGGGTTTCTGTTTGAGCTCCAGACAGAGGGTTTCTGTTTCTGTTTGAGGCAAAGTAAGGAAAGACACAGAGAGGTTTATGTTAATTAATGAGCTCCAGAACAGACAGAGAGAGGGCTTCATGTTAAACCAAACAGACACAGAAGGAAGAAGGGCTGCTTGAGTTTGAGTTGCACTTGAACAAGATCTTCGATGAATAGATTCAAGCAAGCAATGCTTGGGTTTGAGCTAAAAAAAACAGAGACAGAGACGGAAAGAACTAAATTTAATAACAGGTGGATACATATGCACAGGGTTAAAGTAATGAAGAAGATAAAGAGAGGGTGATTCAATTTGTTGGTAGGAGCCGACGCAAGGCTTCAACAACTACGGGTTTGTTGAAGAATGCAGAAGAGCAAATCACCAGAATTAGAAGGAGGATGTCTAGGGTTCAAAGAGGTTTTGGATTGGGTTTCACCAACCAATGTCGAATCTATCTATGAGGCTGCGTCCACAAATCATGGTTCCCATCAGATAGAATTTTCCAAGATTTTATGCAAGCTTAAAACAAGTGAATTCAAGTCAAGTAAATATGTTCATGCAAATAAATGGAAAACAGGTGGAGGGAGGAGGGTAATACGAATTTAATGAACAATAAAACATCAATGAGCCATAAAGCAAGGTTGAAGGAAGCATAAGAGCAGAACAAAGCATAGCATAGAGGAAATAAATACCTGGGATTAGAAGAAAAGCAGCCCTGTAGTTGAGCGTTAAGCAGCAATGATGTCCATGACCCAGAAGAGCGTTGAGCAGCAACGATCTCCATGACACAGAAGAAGAGTGTTGAGCAGGGAAAAATTTGGCAGTAGATATACAGATTTTTTCTGCACATATATGTGAAGAGGAGGTTTGAACTTTGAACTTTGGACCTATTTGATTGATAGATCTACCAAGTCTTTCATTGGAAACATGCTTTAAAGTATGGAGTTCCACGCCAACATCTGCAAATCTGTTTTCCAATCTGAAGTTATTGTACCAATATGCAAGCATTTCTTTATATTTGTCAAGACTGGTATCTACTCTCTGAAGTGTGCACCAATTTTTTCTTACAAGGTGGGACAGTGATTATTCTTTGCAGTCTTACCTGATTTCTTTTGTACATGAGAGGTTGATTCTTTTGAACTGGAGGCGAGAGGACAGGTCGTGCTCTTGTTCCATGGCATATATAACTGATTTTTTTCAAAGCGGCTCACACGGCAAGCTTATGGTCACTTGTTTCAACATAACATAGTTGTAGCTACGAGTTGCAGTGAGCCGTGGAGTTGGTGTGGGCTGGGATTGATTTTGTTGTTGCAGCTATGTTCAAAGCTGTGGGTGGACTCAGTGCGGGTTGCCTCTTCACCAAAAAGAGAGCTAGGAGCTCAGCCAATGTGCCTGCAGGAGAAGGAAAAGAAGGAAGGCTACCGAACAAAGAATAGAGGAGCTAAGTCTTCACATTGTTGTTGCAGCTAAGGAGCTAAGAACAAAGCCAGGAGCCAAGCCAGTGGATATGCAGGAGAGGAGCATGGCTATGGCTTAGCATCTGAGCCCAGCGATGACTAGTTCATAGTGTAGCATAACACATTTCATATTTATAGGATTTCTAGACCTCCTCTCCTTCATCCTCCTTGCAGTTCTGGGAGCTTTCACTCTGACCTGTTCTCAAAAGCATGTCCCCGACTTCATTAAGAGGGTGGACGAGCTCAGGGCTAAGGCGTGGATTTAATCACTTGCGTTGCTGTAAACTAAGGCATCCTTCGTGCTTAAAGCACGGGCGGATTCTCTTGGGATTGGAGGAGATAATAGCAAAGTTCTATTGCTCTCTGATGGCAACGGGAAATTCACCAAGGCCATCGAGGTTTATGTCGATTTAAGCGATAAGGTGGTGGGTTTAGGTGTGCGAATGCGCAGGTACTCATTACTGGTGGGCAATGGGGTCGTTAAAATGCTCAATTTAGAGGAAGGCAGGTTGTTTACCTTCAGCGGGGTCGATGATATATTGAAGGCCATGTGAGCTTTCGTAGGGTTTGAGATCTGTGGGTTAAGCTTCAGCGGGTTTTCGC

Ace file of the UniGene sp_v3.0_unigene6230

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peroxiredoxin, putative n=1 Tax=Ricinus communis RepID=B9SRG0_RICCO	-	-	6.0e-30	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Peroxiredoxin	-	-	1.012e-06	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxiredoxin.	EC:1.11.1.15	-	1.036e-11	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		1.036e-11	%
Sma3	Metabolic pathways	01100		1.036e-11	%

Source	Gene names
Sma3	At3g52960; CHLREDRAFT_157173; F8J2_130; GSVIVT00021685001; LOC_Os02g09940; LOC_Os06g42000; OSJNBa0029G06.40; OSJNBa0072A21.9; Os02g0192700; Os06g0625500; OsI_06200; OsI_23767; OsJ_05717; OsJ_22032; P0437H03.112; P0453H10.33; PHYPADRAFT_18048; PHYPADRAFT_2

Source	GOs	Term	Type	Identity
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	peroxiredoxin activity	GO:0051920	Molecular Function	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR012335	-	-
Sma3	Redoxin	IPR013740	-	-
Sma3		IPR017936	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G52960.1	Thioredoxin superfamily protein chr3:19639699-19640403 FORWARD LENGTH=234	1.0e-32	55%
RefSeq	Arabidopsis thaliana	NP_190864.1	peroxiredoxin-2E [Arabidopsis thaliana]	1.0e-32	55%
RefSeq	Populus trichocarpa	XP_002327377.1	predicted protein, partial [Populus trichocarpa]	5.0e-36	58%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN26

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 148 - 239

Fln protein: CSITHFIFIGFLDLLSFILLAVLGAFTLTCSQKHVPDFIKRVDELRAKAWI*SLALL*TKASFVLKARADSLGIGGDNSKVLLLSDGNGKFTKAIEVYVDLSDKVVGLGVRMRRYSLLVGNGVVKMLNLEEGRLFTFSGVDDILKAM*

Protein Length: 149

Fln nts: ATGGGGGTGTCCGTCCTCTCTGGGTCTGGGTCTGGGTCTGGGTCGAGCGAGGAGACGGGAATTGCCGTGTGTCCTGGAGGGGAGCAACCTGTTGGAAATGGAAATTGGCGGTTCTGATGAAATCGTTTCATCAAACGAGACAGATGGAGACGGAGAGGTTTATGTTAATTAATGAGACAGGCGAAAATGAGGAAGGAGGGCCTCTGACAGAGGTTCATGTTCTGTTTGACTATGAATAACTTGTTGGAAATGGCAATTGGCGGTTGTGTCCTTTCTGGGTCGAACCAGACTGATGGACACAGAGAGGTTTATGTTAATTAATGAGGGTTTCTGTTTGAGCTCCAGACAGAGGGTTTCTGTTTCTGTTTGAGGCAAAGTAAGGAAAGACACAGAGAGGTTTATGTTAATTAATGAGCTCCAGAACAGACAGAGAGAGGGCTTCATGTTAAACCAAACAGACACAGAAGGAAGAAGGGCTGCTTGAGTTTGAGTTGCACTTGAACAAGATCTTCGATGAATAGATTCAAGCAAGCAATGCTTGGGTTTGAGCTAAAAAAAACAGAGACAGAGACGGAAAGAACTAAATTTAATAACAGGTGGATACATATGCACAGGGTTAAAGTAATGAAGAAGATAAAGAGAGGGTGATTCAATTTGTTGGTAGGAGCCGACGCAAGGCTTCAACAACTACGGGTTTGTTGAAGAATGCAGAAGAGCAAATCACCAGAATTAGAAGGAGGATGTCTAGGGTTCAAAGAGGTTTTGGATTGGGTTTCACCAACCAATGTCGAATCTATCTATGAGGCTGCGTCCACAAATCATGGTTCCCATCAGATAGAATTTTCCAAGATTTTATGCAAGCTTAAAACAAGTGAATTCAAGTCAAGTAAATATGTTCATGCAAATAAATGGAAAACAGGTGGAGGGAGGAGGGTAATACGAATTTAATGAACAATAAAACATCAATGAGCCATAAAGCAAGGTTGAAGGAAGCATAAGAGCAGAACAAAGCATAGCATAGAGGAAATAAATACCTGGGATTAGAAGAAAAGCAGCCCTGTAGTTGAGCGTTAAGCAGCAATGATGTCCATGACCCAGAAGAGCGTTGAGCAGCAACGATCTCCATGACACAGAAGAAGAGTGTTGAGCAGGGAAAAATTTGGCAGTAGATATACAGATTTTTTCTGCACATATATGTGAAGAGGAGGTTTGAACTTTGAACTTTGGACCTATTTGATTGATAGATCTACCAAGTCTTTCATTGGAAACATGCTTTAAAGTATGGAGTTCCACGCCAACATCTGCAAATCTGTTTTCCAATCTGAAGTTATTGTACCAATATGCAAGCATTTCTTTATATTTGTCAAGACTGGTATCTACTCTCTGAAGTGTGCACCAATTTTTTCTTACAAGGTGGGACAGTGATTATTCTTTGCAGTCTTACCTGATTTCTTTTGTACATGAGAGGTTGATTCTTTTGAACTGGAGGCGAGAGGACAGGTCGTGCTCTTGTTCCATGGCATATATAACTGATTTTTTTCAAAGCGGCTCACACGGCAAGCTTATGGTCACTTGTTTCAACATAACATAGTTGTAGCTACGAGTTGCAGTGAGCCGTGGAGTTGGTGTGGGCTGGGATTGATTTTGTTGTTGCAGCTATGTTCAAAGCTGTGGGTGGACTCAGTGCGGGTTGCCTCTTCACCAAAAAGAGAGCTAGGAGCTCAGCCAATGTGCCTGCAGGAGAAGGAAAAGAAGGAAGGCTACCGAACAAAGAATAGAGGAGCTAAGTCTTCACATTGTTGTTGCAGCTAAGGAGCTAAGAACAAAGCCAGGAGCCAAGCCAGTGGATATGCAGGAGAGGAGCATGGCTATGGCTTAGCATCTGAGCCCAGCGATGACTAGTTCATAGTGTAGCATAACACATTTCATATTTATAGGATTTCTAGACCTCCTCTCCTTCATCCTCCTTGCAGTTCTGGGAGCTTTCACTCTGACCTGTTCTCAAAAGCATGTCCCCGACTTCATTAAGAGGGTGGACGAGCTCAGGGCTAAGGCGTGGATTTAATCACTTGCGTTGCTGTAAACTAAGGCATCCTTCGTGCTTAAAGCACGGGCGGATTCTCTTGGGATTGGAGGAGATAATAGCAAAGTTCTATTGCTCTCTGATGGCAACGGGAAATTCACCAAGGCCATCGAGGTTTATGTCGATTTAAGCGATAAGGTGGTGGGTTTAGGTGTGCGAATGCGCAGGTACTCATTACTGGTGGGCAATGGGGTCGTTAAAATGCTCAATTTAGAGGAAGGCAGGTTGTTTACCTTCAGCGGGGTCGATGATATATTGAAGGCCATGTGA___GCTTTCGTAGGGTTTGAGATCTGTGGGTTAAGCTTCAGCGGGTTTTCGC

Fln Alignment:

Contig6230___ILLAVLGAFTLTCSQKHVPDFIKRVDELRAKAWI*SLALL*TKASFVLKARADSLGIGGDNSKVLLLSDGNGKFTKAIEVYVDLSDKVVGLGVRMRRYSLLVGNGVVKMLNLEEGRLFTFSGVDDILKAM
A9NN26______________VLLAVPGAFTPTCSQKHLPGFVEKADELKAKG-VDTIACVSVNDAFVMRAWGENLNVG---DKVLLLADGIQEFTKALGVTLDLSDKPVGLGVRSRRYALLAEDGVVKVLNLEEGGAFTVSSAEDILKAL

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
1855		83	16		0.994512
1894	33		50	16	1.0
1899			83	16	0.994512
1910	85	14			0.993533
1915	85		14		0.993533
1916	14		85		0.993533
1917		16	16		0.988813
1919	80			20	0.995493
1922	80		20		0.995493
1924	80			20	0.995493
1927		20		80	0.995493
1929		20		80	0.995493
1930	20	80			0.995493
1977	20		80		0.995493
1983	20		80		0.995493
2060	20		80		0.995493
2077		75		25	0.996473
2078	25		75		0.996473
2080		50		50	1.0
2115		75		25	0.996473
2117	25		75		0.996473
2118	25		75		0.996473
2169	33		66		1.0
2173			66	33	1.0
2241		12	87		0.992554
2247	62			37	1.0
2304			66	33	1.0
2314		12		87	0.992554
2369			85	14	0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
19	44	TCTGGG TCTGGG TCTGGG TCTGGG TC	26

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain