SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6222

Length: 2144 nt

UniGene Fasta

>sp_v3.0_unigene6222
CGTCGTGACCTTGGCTGTCACTCAGTTTTCTACCCACAAACGTTGACACTCCACCGAATCTTCAACCCGATCAAAGTAGATGAGAATGGTCGTTGTGATGTTTTTCAGATCCCTTGCTCCATCAGTCTATGTAAACAGGAGGAACAGCAGTGATGGGGATGATTCAGGCCCTGTAAAGTAAACATCCTACTGCGATTTGTGCCCTGTAAACTAATTTGGGATTTTGCCATGGAGCACAATGGAGCTGATCATCTTGTGGACCCATTGATTCAACATGAGGATATCAAGAGTCAGCAGAAGTCTGAGGAGGAGTCGGCCTTCATAGAATCTGTGTTATCTCAAGAACATATTTCCTGGTCCAGAGTTGCTCAAGCTGCCATTATTGAATCCAAGAAACTATGGATTCTCTCTGCCCCTTCTATAATAGTTAGTGTTTTTAATTTTATGCCCTCTGCCATATCTCAAATGTTTGCTGGTCATCTTGGAGAGTTGCAGCTTGCAGGAGCATCCATAGCTAGTGTGGCCATTCAAGGATTGGCCTATGGAATTATGCTTGGAATGGCAACAGCAGTCCAGACTGTGTGTGGGCAAGCTTACGGTGCTAAACAGTACAGCATGCTTGGAGTCATCTGTCAGAAGTCCATGATAATAATGACTGGAACTGCAATACTCCTGGGCATCCTCTACTATTTTGCAGATCCAGTATTGATTGCCATAGGGCAGAGTAAAGAAATCTCTGCTGCAGGAGGTATTTTTGCCAAAGGTCTTATTCCTCAGTTGTTTGCTTTTGCCCTCAATTGCCCCATGCAGAGGTTTTTGCAGGCTCAGAACATAGTGGCCCCTATTGCCTATATTGCTGTTGGGACATGTCTATTCCATATATTGATCACCTGGGTGGCAGTAGACAAGCTAGGATTTGGCCTGCTAGGGATAGCCCTAATAGTGAGTTTGACTTGGTGGGTTCTGGTCATTACTACTGCCTTGTATATATTCTATAGCCCATACTGCAGGCATACATGGACGGGCTTCACCTTGAAGGCCTTCACAGGACTCTGGTCATACTTCAAGTTAACTCTGGCATCGGCTGTTATGCTAACTTTGGAAATATGGTACATTGAAGTATTGGTGCTTGTATCGGGTTTGCTGCCAAATGCAGAGGTCGCTCTGGATTCCATTTCTGTTTGCATGAATTATTACAACTGGGAGTTAATGGCAATGTTGGGTCTCAGTACAGCTGCAAGTATAAGAGTGGGTAATGAGCTGGGAGCCAGGAGACCTAAAACTGCAAGATTTTCAGTTATAGTTGTGGTGGTCACTTGCTTCATAATAAGTGTCATACTTGCCGTTGGGATTCTGATACTGAAGAAAGAACTCGCCATGGCATTCACAAGCACCACTGTGGTTATACGCGCAGTCTATGCATTGATACCTCTACTTGCAATATCTGTTCTCTTGAATGGCACCCAACCTATTCTCTCAGGGGTGGCAATTGGATGTGGATGGCAAGCTGTGGTGGCATATGTGAATTTAGTGACATACTATCTTGTTGGCTTACCAGTTGGAATTGCTTTAGGATTGAAGACCAGTCTTGGAATCGATGGAATCTGGTGGGGATTAATCCTGGGAGTGGCACTGCAGACGTTAGTACTCATTATTCTTACAGCACGTACTAATTGGAACAAAGAGGTCCAATCGGCGTCGGAGAGAGTTGAGCGTTCCCAGTACGGGGAGCCTGCAGATAACTCAAACGGAGTGGCGATTCCATAAGTTGGATTATTGAAATTAAGAGTGAATCGCATTGCAAAGAAAAGGGCATGCCTAATTTGATGGCAAATCGTTTTGTATGATGCGAGGTACATCGATTGGGACAACGGAAATTGAAGAAGTTAGTTAATTCAATTCTTCTACCAGAGGCTGCTTCTTTTCTTCTTTATAGCGTATTCAAACGAAAGTAGTTCAGGCCACGCGTGCTCGACTTTTGGCTATTGTGGAGAAATGGCCGGTTCTTGTACTGCTTTGAAAACAAAAATGTATTACATACTCAGCATGTTCCTTACAGTATGTCAGGGTTATTTTCAGCCACACATGTTCATTAGAGCTATAATTGCAACATTCCTATTTAATTGCAACATTTCTATTTTTTG

Ace file of the UniGene sp_v3.0_unigene6222

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein TRANSPARENT TESTA 12 [Arabidopsis thaliana] sp\|Q9LYT3.1\|TT12_ARATH RecName: Full=Protein TRANSPARENT TESTA 12; AltName: Full=MATE efflux family protein TT12; AltName: Full=Protein DTX41 emb\|CAB86931.1\| putative protein [Arabidopsis thaliana] emb\|C	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	Multidrug resistance pump, putative	-	-	2.38403e-41	-

Source	Gene names
Sma3	117M18_23; AT4G21910; AT4g00350; AT4g21900; AT4g21910; AT4g25640; A_IG005I10.20; At1g11670; At1g12950; At1g33080; At1g33090; At1g33100; At1g33110; At1g47530; At1g61890; At1g73700; At2g34360; At3g21690; At3g26590; At3g59030; At4g00350; At4g21900; At4g21910

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type vacuole membrane	GO:0009705	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	solute:hydrogen antiporter activity	GO:0015299	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	proanthocyanidin biosynthetic process	GO:0010023	Biological Process	-
Sma3	maintenance of seed dormancy	GO:0010231	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Peptidase M1, alanyl aminopeptidase	IPR012779	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3		IPR015521	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G59030.1	TT12, ATTT12 MATE efflux family protein chr3:21819124-21821288 FORWARD LENGTH=507	61%
RefSeq	Arabidopsis thaliana	NP_191462.1	protein TRANSPARENT TESTA 12 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002300856.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADQ8

Fln msg:

Fln protein: MEHNGADHLVDPLIQHEDIKSQQKSEEESAFIESVLSQEHISWSRVAQAAIIESKKLWILSAPSIIVSVFNFMPSAISQMFAGHLGELQLAGASIASVAIQGLAYGIMLGMATAVQTVCGQAYGAKQYSMLGVICQKSMIIMTGTAILLGILYYFADPVLIAIGQSKEISAAGGIFAKGLIPQLFAFALNCPMQRFLQAQNIVAPIAYIAVGTCLFHILITWVAVDKLGFGLLGIALIVSLTWWVLVITTALYIFYSPYCRHTWTGFTLKAFTGLWSYFKLTLASAVMLTLEIWYIEVLVLVSGLLPNAEVALDSISVCMNYYNWELMAMLGLSTAASIRVGNELGARRPKTARFSVIVVVVTCFIISVILAVGILILKKELAMAFTSTTVVIRAVYALIPLLAISVLLNGTQPILSGVAIGCGWQAVVAYVNLVTYYLVGLPVGIALGLKTSLGIDGIWWGLILGVALQTLVLIILTARTNWNKEVQSASERVERSQYGEPADNSNGVAIP*

Protein Length: 514

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTCTACCCACAAACGTTGACACTCCACCGAATCTTCAACCCGATCAAAGTAGATGAGAATGGTCGTTGTGATGTTTTTCAGATCCCTTGCTCCATCAGTCTATGTAAACAGGAGGAACAGCAGTGATGGGGATGATTCAGGCCCTGTAAAGTAAACATCCTACTGCGATTTGTGCCCTGTAAACTAATTTGGGATTTTGCC_-_ATGGAGCACAATGGAGCTGATCATCTTGTGGACCCATTGATTCAACATGAGGATATCAAGAGTCAGCAGAAGTCTGAGGAGGAGTCGGCCTTCATAGAATCTGTGTTATCTCAAGAACATATTTCCTGGTCCAGAGTTGCTCAAGCTGCCATTATTGAATCCAAGAAACTATGGATTCTCTCTGCCCCTTCTATAATAGTTAGTGTTTTTAATTTTATGCCCTCTGCCATATCTCAAATGTTTGCTGGTCATCTTGGAGAGTTGCAGCTTGCAGGAGCATCCATAGCTAGTGTGGCCATTCAAGGATTGGCCTATGGAATTATGCTTGGAATGGCAACAGCAGTCCAGACTGTGTGTGGGCAAGCTTACGGTGCTAAACAGTACAGCATGCTTGGAGTCATCTGTCAGAAGTCCATGATAATAATGACTGGAACTGCAATACTCCTGGGCATCCTCTACTATTTTGCAGATCCAGTATTGATTGCCATAGGGCAGAGTAAAGAAATCTCTGCTGCAGGAGGTATTTTTGCCAAAGGTCTTATTCCTCAGTTGTTTGCTTTTGCCCTCAATTGCCCCATGCAGAGGTTTTTGCAGGCTCAGAACATAGTGGCCCCTATTGCCTATATTGCTGTTGGGACATGTCTATTCCATATATTGATCACCTGGGTGGCAGTAGACAAGCTAGGATTTGGCCTGCTAGGGATAGCCCTAATAGTGAGTTTGACTTGGTGGGTTCTGGTCATTACTACTGCCTTGTATATATTCTATAGCCCATACTGCAGGCATACATGGACGGGCTTCACCTTGAAGGCCTTCACAGGACTCTGGTCATACTTCAAGTTAACTCTGGCATCGGCTGTTATGCTAACTTTGGAAATATGGTACATTGAAGTATTGGTGCTTGTATCGGGTTTGCTGCCAAATGCAGAGGTCGCTCTGGATTCCATTTCTGTTTGCATGAATTATTACAACTGGGAGTTAATGGCAATGTTGGGTCTCAGTACAGCTGCAAGTATAAGAGTGGGTAATGAGCTGGGAGCCAGGAGACCTAAAACTGCAAGATTTTCAGTTATAGTTGTGGTGGTCACTTGCTTCATAATAAGTGTCATACTTGCCGTTGGGATTCTGATACTGAAGAAAGAACTCGCCATGGCATTCACAAGCACCACTGTGGTTATACGCGCAGTCTATGCATTGATACCTCTACTTGCAATATCTGTTCTCTTGAATGGCACCCAACCTATTCTCTCAGGGGTGGCAATTGGATGTGGATGGCAAGCTGTGGTGGCATATGTGAATTTAGTGACATACTATCTTGTTGGCTTACCAGTTGGAATTGCTTTAGGATTGAAGACCAGTCTTGGAATCGATGGAATCTGGTGGGGATTAATCCTGGGAGTGGCACTGCAGACGTTAGTACTCATTATTCTTACAGCACGTACTAATTGGAACAAAGAGGTCCAATCGGCGTCGGAGAGAGTTGAGCGTTCCCAGTACGGGGAGCCTGCAGATAACTCAAACGGAGTGGCGATTCCATAA___GTTGGATTATTGAAATTAAGAGTGAATCGCATTGCAAAGAAAAGGGCATGCCTAATTTGATGGCAAATCGTTTTGTATGATGCGAGGTACATCGATTGGGACAACGGAAATTGAAGAAGTTAGTTAATTCAATTCTTCTACCAGAGGCTGCTTCTTTTCTTCTTTATAGCGTATTCAAACGAAAGTAGTTCAGGCCACGCGTGCTCGACTTTTGGCTATTGTGGAGAAATGGCCGGTTCTTGTACTGCTTTGAAAACAAAAATGTATTACATACTCAGCATGTTCCTTACAGTATGTCAGGGTTATTTTCAGCCACACATGTTCATTAGAGCTATAATTGCAACATTCCTATTTAATTGCAACATTTCTATTTTTTG

Fln Alignment:

Contig6222___IESVLSQ-EHISWSRVAQAAI-IESKKLWILSAPSIIVSVFNFMPSAISQMFAGHLGELQLAGASIASVAIQGLAYGIMLGMATAVQTVCGQAYGAKQYSMLGVICQKSMIIMTGTAILLGILYYFADPVLIAIGQSKEISAAGGIFAKGLIPQLFAFALNCPMQRFLQAQNIVAPIAYIAVGTCLFHILITWVAVDKLGFGLLGIALIVSLTWWVLVITTALYIFYSPYCRHTWTGFTLKAFTGLWSYFKLTLASAVMLTLEIWYIEVLVLVSGLLPNAEVALDSISVCMNYYNWELMAMLGLSTAASIRVGNELGARRPKTARFSVIVVVVTCFIISVILAVGILILKKELAMAFTSTTVVIRAVYALIPLLAISVLLNGTQPILSGVAIGCGWQAVVAYVNLVTYYLVGLPVGIALGLKTSXXXXXXXXXXXXXVALQTLVLIILTARTNWNKEVQSASERVERSQYGEPAD-NSNGVAIP*VGLL
D5ADQ8______________LELILSNADNLPWRKMMRAAVFLESKLLWSLALPAIVVYMVNYIMSMATQIFCGHLGNLELAAASLGNTGIQVFAYGLMLGMGSAVETLCGQAYGAKTYGMLGIYLQRSTILLMVTGIPLTIIYAFSKPLLVLLGESETIAAAAAIFVYGLIPQIFAYAANFPIQKFLQAQSIVAPSAYISFCTIFVHVFLTWLAVYKLGFGIFGAALVLSLSWWIVVIAQFIYILKSPRCKYTWTGFSLQAFHGLPSFLKLSAASAVMLCLETWYFQILVLLAGLLDNPEIALDSLSICMSVLGWLFMISVGFNAAASVRVSNELGAGNPRAASFSVKIVTLMSFIISVIFGIVIILLRNVMSYAFTEGTEVADAVAELSPFLAFSIILNGVQPVLSGVAVGCGWQALVAYINVGCYYVIGIPLGCLLGFKFDFGVKGIWSGMLGGTCLQTIILLIITYRTNWNKEVEKASHRLSTWDNKAPPNLDGNPDGTPKIGVI

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
332		20		80	0.995493
348		25		75	0.996473
358		25		75	0.996473
474		75		25	0.996473
514	80			20	0.995493
673	25	75			0.996473
674	25	75			0.996473
960	12		87		0.992554
978	12	87			0.992554
981		87		12	0.992554
1154	20		80		0.995493
1157			80	20	0.995493
1158	80			20	0.995493
1419	88		11		0.923564
1908	89		10		0.999919
1984		25		75	1.0
2044		87	12		0.992554
2095		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain