SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6174

Length: 2076 nt

UniGene Fasta

>sp_v3.0_unigene6174
CGTCGTGACCTTGGCTGTCACTCAATTTTTGTTCAAATTTGATTTCTCCTCCACGGACTGGACGCGTATGTGAGAGACCCTTGCCACCGCTTAAATGTCACTGGCATTTTGTTAGCTGAAAATTTGATCTCTTCATAGGACGACGAAGGAAGCCAGAGGCGTATCTGCGTTCATTAATCTGGATTGATTTGTAATTAAAAAGCGTACAGCTCTGGTTGCCTAAAGTTTGCAGACGCTAGTTTTCTGCAAAACGTTGGAATCAATCGATCCGACAAGCGATCAATTAAGAAAGATCAGTATTTGACGCGAGTATTGATCTTATTGGCAATGACTTCTTCAATGGAAACACAAGCATTTCCACCGGTGAGCATTTTACTTTCCGGTCTAATCGGTGGGTTATCGGTAGCATTATTCTTCGCTTTCTATCTCAGAAGAAAACGCAATGAAGTGAAGGCGGCGGTGGCCCAATTGCCTCCGGAGAACACCAATAATGACAGAGCTTCCAGGCCTTCAACCCACGCCAAGAACAAATCTCATTCTCACTCCAAGCCTCATGCTTCTGCTGCTGACAAGGGGCGACGTCACCACCCCCTGGATCTGAACACGCTGAAGGGACATGGTGATGCAGTTACAGGGCTCTGTTTCACATCAGATGGCCGAAGTTTGGCAACAGCTTGTGCAGACAGGGTAGTGAGGGTCTTCAAATTGGATGATGCTTCAAGCAAAAGCTTCAAATTTTTACGGATCAACATGCCAACTGGAAGTCATCCTGTAGCTGTTGCATTTTGCAAGGAAGCATCACAACTAGTTGTCGGAGCACATAATATTTCTGGATCATCCTTATACATGTATGCAGAGGCATCAGGCAAACCATCTGAAGAAGCAAATCAGCAATCCAAACTACCCCTGCCTGAACTGAAATGGGAGAAGGACCAAGTGCATGACAAAAAGGGAATCTTAACTCTTTTTGGCACTTCTGCAACATATGGCAGTGCTGATGGCAGTACGATCATTGCTTCATGCTCTGAAGGTACAGACATCAAACTTTGGCAAGGAGAGAATGGAAAATTCTTGGGAGCTACAGACACAAATCAGTTGAAAAATAACATGGCTGTTCTTTCACCAAATGGGCGCTTTGTGGCTGCTGCAGCTTTTACGGCAGATGTGAAGGTGTGGGAAATCGTTTATGGGAAGGATGGCTCAGTCAAAGAGGTTATGAGGGTTATGCAGCTTAAAGGTCACAAGAGTGCAGTGACATGGCTTTGCTTCACATCAGATTCAGAAAGGATTCTGACTGCATCAAAGGATGGTTCAATGAGAATATGGAACATTAATGTTCGATACCATCTTGATGAAGATCCCAAGTGTTTGAAGGTGTTTCCAATACCGTTGCAAAATGAAAAGGGTTTAGTGCTGCATTATGACCGAATGGCCCTCTCACCAGATGATAAGGTCATTGCCGTGACACATGGTTCTATGTTACAATGGTTAAGTTTTGAGACTGGAGAAATTCTTGATACAGCAGATAAAGCTCATGACGGGGATATCACATGTATGGCTTGGGCACCTCAGCCTCTTGCAACAGAAAATGGTCTCGCAACAATTTTAGCTACAGCCAGCAATGACAAAAAAGTGAAGTTTTGGACTGCCCCTAAATTTCCTTTACATTGAAATTGGTCCGTGTTTTACTAACAGCCATTGCTCAGGTCCTTGTATATTCGTCACTCATCACCAATTTGTATCGCGTGAATGATATGAGAGATGTTCATTAACGAGTTTTACTGAGAAGCATATGCATTTACAGCATGAAAGATACGGTTATCAAATCAATTTTAGGAAATTGTTGGAAGAGGGTTTTTTATGGATATAATTAAGAATAGACATTTCTCATGAGATGTAATAGTGCTTAGCATGCACTATTTGCCGCTCTAAGAATAAGAATTTTGTGATAGTTTTCAACACATACTCTCATCTTCCTTCTTTTTAGCATGTGATACGTGGATACAATTTTGTTAGTATTATTTTTACCTTTTTCTATGAAACCAAAATGCTTTATGTGCCAGTGTTAATGGACAG

Ace file of the UniGene sp_v3.0_unigene6174

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDD1_RICCO	-	-	0.0	65%
FL-Next	tr=Nucleotide binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	66%

Source	Gene names
Sma3	AT4g00090; At4g00090; F6N15.8; GSVIVT00026345001; LOC_Os03g64110; OSJNBa0059G06.8; Os03g0858400; OsI_14418; OsJ_13442; PHYPADRAFT_195222; POPTRDRAFT_552052; POPTRDRAFT_774237; RCOM_1612160; VITISV_014050;

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G00090.1	Transducin/WD40 repeat-like superfamily protein chr4:34234-36594 FORWARD LENGTH=430	62%
RefSeq	Arabidopsis thaliana	NP_567150.1	transducin/WD40 domain-containing protein [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002301292.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9RDD1

Fln msg:

Fln protein: MTSSMETQAFPPVSILLSGLIGGLSVALFFAFYLRRKRNEVKAAVAQLPPENTNNDRASRPSTHAKNKSHSHSKPHASAADKGRRHHPLDLNTLKGHGDAVTGLCFTSDGRSLATACADRVVRVFKLDDASSKSFKFLRINMPTGSHPVAVAFCKEASQLVVGAHNISGSSLYMYAEASGKPSEEANQQSKLPLPELKWEKDQVHDKKGILTLFGTSATYGSADGSTIIASCSEGTDIKLWQGENGKFLGATDTNQLKNNMAVLSPNGRFVAAAAFTADVKVWEIVYGKDGSVKEVMRVMQLKGHKSAVTWLCFTSDSERILTASKDGSMRIWNINVRYHLDEDPKCLKVFPIPLQNEKGLVLHYDRMALSPDDKVIAVTHGSMLQWLSFETGEILDTADKAHDGDITCMAWAPQPLATENGLATILATASNDKKVKFWTAPKFPLH*

Protein Length: 449

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTGTTCAAATTTGATTTCTCCTCCACGGACTGGACGCGTATGTGAGAGACCCTTGCCACCGCTTAAATGTCACTGGCATTTTGTTAGCTGAAAATTTGATCTCTTCATAGGACGACGAAGGAAGCCAGAGGCGTATCTGCGTTCATTAATCTGGATTGATTTGTAATTAAAAAGCGTACAGCTCTGGTTGCCTAAAGTTTGCAGACGCTAGTTTTCTGCAAAACGTTGGAATCAATCGATCCGACAAGCGATCAATTAAGAAAGATCAGTATTTGACGCGAGTATTGATCTTATTGGCA_-_ATGACTTCTTCAATGGAAACACAAGCATTTCCACCGGTGAGCATTTTACTTTCCGGTCTAATCGGTGGGTTATCGGTAGCATTATTCTTCGCTTTCTATCTCAGAAGAAAACGCAATGAAGTGAAGGCGGCGGTGGCCCAATTGCCTCCGGAGAACACCAATAATGACAGAGCTTCCAGGCCTTCAACCCACGCCAAGAACAAATCTCATTCTCACTCCAAGCCTCATGCTTCTGCTGCTGACAAGGGGCGACGTCACCACCCCCTGGATCTGAACACGCTGAAGGGACATGGTGATGCAGTTACAGGGCTCTGTTTCACATCAGATGGCCGAAGTTTGGCAACAGCTTGTGCAGACAGGGTAGTGAGGGTCTTCAAATTGGATGATGCTTCAAGCAAAAGCTTCAAATTTTTACGGATCAACATGCCAACTGGAAGTCATCCTGTAGCTGTTGCATTTTGCAAGGAAGCATCACAACTAGTTGTCGGAGCACATAATATTTCTGGATCATCCTTATACATGTATGCAGAGGCATCAGGCAAACCATCTGAAGAAGCAAATCAGCAATCCAAACTACCCCTGCCTGAACTGAAATGGGAGAAGGACCAAGTGCATGACAAAAAGGGAATCTTAACTCTTTTTGGCACTTCTGCAACATATGGCAGTGCTGATGGCAGTACGATCATTGCTTCATGCTCTGAAGGTACAGACATCAAACTTTGGCAAGGAGAGAATGGAAAATTCTTGGGAGCTACAGACACAAATCAGTTGAAAAATAACATGGCTGTTCTTTCACCAAATGGGCGCTTTGTGGCTGCTGCAGCTTTTACGGCAGATGTGAAGGTGTGGGAAATCGTTTATGGGAAGGATGGCTCAGTCAAAGAGGTTATGAGGGTTATGCAGCTTAAAGGTCACAAGAGTGCAGTGACATGGCTTTGCTTCACATCAGATTCAGAAAGGATTCTGACTGCATCAAAGGATGGTTCAATGAGAATATGGAACATTAATGTTCGATACCATCTTGATGAAGATCCCAAGTGTTTGAAGGTGTTTCCAATACCGTTGCAAAATGAAAAGGGTTTAGTGCTGCATTATGACCGAATGGCCCTCTCACCAGATGATAAGGTCATTGCCGTGACACATGGTTCTATGTTACAATGGTTAAGTTTTGAGACTGGAGAAATTCTTGATACAGCAGATAAAGCTCATGACGGGGATATCACATGTATGGCTTGGGCACCTCAGCCTCTTGCAACAGAAAATGGTCTCGCAACAATTTTAGCTACAGCCAGCAATGACAAAAAAGTGAAGTTTTGGACTGCCCCTAAATTTCCTTTACATTGA___AATTGGTCCGTGTTTTACTAACAGCCATTGCTCAGGTCCTTGTATATTCGTCACTCATCACCAATTTGTATCGCGTGAATGATATGAGAGATGTTCATTAACGAGTTTTACTGAGAAGCATATGCATTTACAGCATGAAAGATACGGTTATCAAATCAATTTTAGGAAATTGTTGGAAGAGGGTTTTTTATGGATATAATTAAGAATAGACATTTCTCATGAGATGTAATAGTGCTTAGCATGCACTATTTGCCGCTCTAAGAATAAGAATTTTGTGATAGTTTTCAACACATACTCTCATCTTCCTTCTTTTTAGCATGTGATACGTGGATACAATTTTGTTAGTATTATTTTTACCTTTTTCTATGAAACCAAAATGCTTTATGTGCCAGTGTTAATGGACAG

Fln Alignment:

Contig6174___LFFAFYLRRKRNEVKAAVAQLPPE-NTNNDRASRPSTXXXXXXXXXXXXXXXXXXXGRRHHPLDLNTLKGHGDAVTGLCFTSDGRSLATACADRVVRVFKLDDASSKSFKFLRINMPTGSHPVAVAFCKEASQLVVGAHNISGSSLYMYAEASGKPSEEANQQSKLPLPELKWEKDQVHDKKGILTLFGTSATYGSADGSTIIASCSEGTDIKLWQGENGKFLGATDTNQLKNNMAVLSPNGRFVAAAAFTADVKVWEIVYGKDGSVKEVMRVMQLKGHKSAVTWLCFTSDSERILTASKDGSMRIWNINVRYHLDEDPKCLKVFPIPLQNEKGLVLHYDRMALSPDDKVIAVTHGSMLQWLSFETGEILDTADKAHDGDITCMAWAPQPLATENGLATILATASNDKKVKFWTAP
B9RDD1______________LFFKSYFLKRKSEIKSIA---PPELRSDPKKPTKHSQPVTKKSHSKPHSHAADKEQNRRHHPLDLNTLKGHGDAVTGLCFSNDGRSLATACADGVVRVFKLDDASSRSFKFLRINLPAGGIPVAVTFSDDASSVVVASQTLSGASLYLYGEENPKPSNDSKQQPKLPLPEIKWEHRKIHENKAVITLVGTVATYGSADGSSIVASCSEGTDIKLWHGKTGNILGNVDTNQLKNTMAAISPNGRFVAAAAFTADVKVWEIIYSKDGSVKEVPKVMQLKGHKSAVTWLCFTSNSEQIITASKDGSIRIWNINVRYHLDEDPKTLKVFPIPLHDSHDATLHYDRLSLSPDGKILAATNGSTLQWLCVETGKVLDTADKAHDGQITWIAWAPKTIPNGDGQAMVLATASVDKKVKLWAAP

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
634			81	18	0.999994
806	12			87	0.992554
807	87	12			0.992554
808	12		87		0.992554
813		83		16	0.994512
888		20		80	0.995493
966	33			66	0.997452
968			33	66	0.997452
969			33	66	0.997452
970			33	33	0.997753
1096	33		66		0.997452
1254		33		66	0.997452
1255		33	66		0.997452
1417			87	12	0.992554
1443	12	87			0.992554
1444	87			12	0.992554
1445			87	12	0.992554
1540		66		33	1.0
1635	10			90	0.90298
1636		10	90		0.90298
1638	90			10	0.90298
1639			88	11	0.923564
1711		90	10		0.90298
1713		10		90	0.90298
1717		10		90	0.90298
1718	90	10			0.90298
1926		38	61		1.0
1927			38	61	1.0
1930		38	61		1.0
1935	66		33		1.0
1993		18		81	0.999994

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain