SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6162

Length: 2459 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene6162
ATGGGGAAGACACTTTTATTTCATCGCAATTTATTGTTGGAGTTGGAGTTGGAGTTGGAGTTGCAGTTGCAGAGAGAAGGCACGCAAGTGGGACATATAAGAAGCATAGAGGATCAGCGGCAGCGAGGCTTTTGCGGTCCCTCGACCATCTTCTTTGTGTTTTGTTGCTGTGGGTGTGAATCACAAAACCCTAATTTCCATTGAATCCTGTAAAACCTTGGCTACGCTAACTGCTGCTCTTAGGTAGGAGTATGGCTCAAAATCATTCACTGGTTCCTCCTGAATCGCCGGTGTTCTCAGAGCTGTCGATCGTGGTGGTGCCGTCGAATAAATGGGTCCCGGCTGTTGCCCGCTTTGGCCGTGACGCCTCTGGCCGATTTATAGAATTCAAGTCCTCCGCCGATTCAACGGAGTCTTTCGATATCAAAACCTATATCCATCATTCTCAGCTTTTTAGAATGGGGCCCACTTTGTCAATGTGGGTAGCAAATGATAATTCATCAACCTATGGAGCAGAGAGCATCTGTCAAGCCATTACGATTCAATTCCCAACAGAAGCAGCAGTCTTTTCATTTGGTTTGACTGTTCAGGAGTGGAATACAGATACATCAGTTGCAGGAGCTGGGGAGAAGTTGGCCAATGGTTCAAGTGATTCATCTTGGAAACTTAACAAGTTTGATAAGAAGATTGAAGCATCATCTGCAAAAATGTATTTCCACTATTATGGGCAACTTCTTCACCAGCAGAACATGTTGCAAGATTATGTGCGGACAGGGTCATATTATGCCGCAGTCATAGAAAACCGTATAGATTTTCATGGTCGCATTGTTGTTGATGTGGGGGCTGGAAGTGGAATTCTCTCTCTGTTTGCAGCACAGGCTGGTGCAAAGCATGTCTATGCTGTGGAAGCATCAGAAATGGTAGATTATGCACGCAGACTTGTTGCTGGAAATCCATCTTTGGGTCAGCATATAACAGTGATCAAGGGGAAAATTGAAGAGGTTGAGTTGCCAGAGAAAGCAGATATTCTAATATCAGAGCCCATGGGAACATTATTACTCAATGAAAGGATGCTAGAAACATATGTTATTGCGAGGGACAGGTTCCTTAGTCCTACTGGAAAAATGTTTCCCACTATGGGCAGGATACATATGGCTCCTTTTAGTGATGAGTATCTATATGTTGAAATTGCAAACAAGGCTTTGTTTTGGCAACAACAAAATTACTATGGTGTTGACTTGACACCATTGCATGGTTCTGCGTTTCAGGGCTATTTCTCCCAGCCTGTTGTAGACGCTTTTGACCCAAGATTGCTTGTGGCCCCTCCTATCTCTCACACAATTGACTTTACAAAGGTCAAGGAAGAAGAGTTGTATGAAATTGACATTCCCTTGAACTTTACTGCATCTGTGGGCACTCGAGTTCATGGCCTAGCATGTTGGTTTGATGTTTTATTCAATGGAAGTGCTGTACAACGATGGCTGACTACTGCACCTGGAGCTCCAACTACGCACTGGTATCAACTTCGTTGTGTCTTGTCTCAACCTATTTATGTAATGGCTGGACAGGTTATTACAGGTCGGCTCCATATGGTTGCCCATAGTGCACAGAGCTATACTATGTATCTCACGATGTCAGCGAAGATGTGGGGTGCTGGCGCTGATCAAGGTGGTATATTGCAAACTTCTTCAAGCAAGCTTGATCTAAAGGAACCATATTATCGCATGTCTCAACCTCAAGTTTATGCCTGGTCTCAGGATCAATCTACTCAGCAACTAGTGCAGCAGCAGGCAAATGGACTTCCATCACAGCAAGTTGATGGCACAATCCTTGTTCAACAGCAGCCCATACAAGCTTCTGTGATTTTGCAACAGCAACAGCACCAACAACAGTCATCTCAGAATTTCCAACAGCAATCTCTGTTTCTCCAATCACAATAGAAATTTGGATTAAGCATGTATCAGTATCTACATTTTTTCTTAGTGCTGGTCAATTCCTGTGTATTCTTATAGATATGATGTTCAAGATCCCAGCAAGGTTTAGCAAGGTATAGCCTTTTTGAAATATAATGTGTGACGGTCCTATAATTTAATGGGAAAGTAGGGGGAAATTTATTCGGGCACTTGAGAATTTCACTTTGTATTTGAACATTGAAAAAGTGTATTCGGTCCTCATTGGCATCCGCAATAGTAGTTAGAAATTTTAAAGTCAATAATTTTCTGTTCGGGCGGAGGTTCAGGAAACCAATATGATTATCTTCCTGCTGTCTTACGTCAAACTATGTTTTGGAACCTCAAATATTTAATCTTAGCCTCCAAGTAGGTGCCATTTCTTACAGGTTGATAAATGTATTGACATGTTTTAGGAACGTACATGTGAAGCCTACTTAAATTTGGTTCCTGTCGTAGTTGCTTGTGTCTTGACAAATGCAGTTGGTCCTTTCCACTGAACGCCTATCA

Ace file of the UniGene sp_v3.0_unigene6162 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein arginine n-methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RT51_RICCO	-	-	0.0	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Sma3	Protein arginine N-methyltransferase	-	-	1.082e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	1.765e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ubiquinone and other terpenoid-quinone biosynthesis	00130		1.765e-08	%
Sma3	Tetracycline biosynthesis	00253		1.765e-08	%
Sma3	Histidine metabolism	00340		1.765e-08	%
Sma3	Tyrosine metabolism	00350		1.765e-08	%
Sma3	Phenylalanine metabolism	00360		1.765e-08	%
Sma3	Tryptophan metabolism	00380		1.765e-08	%
Sma3	Benzoxazinoid biosynthesis	00402		1.765e-08	%
Sma3	Selenocompound metabolism	00450		1.765e-08	%
Sma3	Biosynthesis of 12-, 14- and 16-membered macrolides	00522		1.765e-08	%
Sma3	Polycyclic aromatic hydrocarbon degradation	00624		1.765e-08	%
Sma3	Methane metabolism	00680		1.765e-08	%
Sma3	Porphyrin and chlorophyll metabolism	00860		1.765e-08	%
Sma3	Carotenoid biosynthesis	00906		1.765e-08	%
Sma3	Phenylpropanoid biosynthesis	00940		1.765e-08	%
Sma3	Flavonoid biosynthesis	00941		1.765e-08	%
Sma3	Anthocyanin biosynthesis	00942		1.765e-08	%
Sma3	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945		1.765e-08	%
Sma3	Isoquinoline alkaloid biosynthesis	00950		1.765e-08	%
Sma3	Insect hormone biosynthesis	00981		1.765e-08	%
Sma3	Biosynthesis of type II polyketide products	01057		1.765e-08	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063		1.765e-08	%
Sma3	Metabolic pathways	01100		1.765e-08	%
Sma3	Biosynthesis of secondary metabolites	01110		1.765e-08	%
Sma3	Histone-arginine N-methyltransferase.	EC:2.1.1.125	-	2.742e-14	-

Source	Gene names
Sma3	At3g06930; At5g49020; CARM1; CARM1A; CARM1B; CHLREDRAFT_140543; CHLREDRAFT_178864; F17A9.8; GSVIVT00019783001; K19E20.17; MICPUCDRAFT_20736; MICPUN_78558; OsI_27289; OsJ_25531; PHYPADRAFT_114834; PHYPADRAFT_121999; PRMT1505; PRMT1508; PRMT2; PRMT4; PRMT4A

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	protein methyltransferase activity	GO:0008276	Molecular Function	-
Sma3	histone-arginine N-methyltransferase activity	GO:0008469	Molecular Function	-
Sma3	[myelin basic protein]-arginine N-methyltransferase activity	GO:0016277	Molecular Function	-
Sma3	protein-arginine omega-N monomethyltransferase activity	GO:0035241	Molecular Function	-
Sma3	protein-arginine omega-N asymmetric methyltransferase activity	GO:0035242	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	protein heterodimerization activity	GO:0046982	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein methylation	GO:0006479	Biological Process	-
Sma3	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-
Sma3	peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	GO:0019919	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000097	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Methyltransferase small	IPR007848	-	-
Sma3	Ribosomal L11 methyltransferase, PrmA	IPR010456	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3		IPR015706	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G06930.2	ATPRMT4B, PRMT4B protein arginine methyltransferase 4B chr3:2185469-2189296 REVERSE LENGTH=535	0.0	70%
RefSeq	Arabidopsis thaliana	NP_187349.2	histone-arginine methyltransferase CARM1 [Arabidopsis thaliana]	0.0	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABX2

Fln msg: your sequence is longer than subject: 563 - 409

Fln protein: MAQNHSLVPPESPVFSELSIVVVPSNKWVPAVARFGRDASGRFIEFKSSADSTESFDIKTYIHHSQLFRMGPTLSMWVANDNSSTYGAESICQAITIQFPTEAAVFSFGLTVQEWNTDTSVAGAGEKLANGSSDSSWKLNKFDKKIEASSAKMYFHYYGQLLHQQNMLQDYVRTGSYYAAVIENRIDFHGRIVVDVGAGSGILSLFAAQAGAKHVYAVEASEMVDYARRLVAGNPSLGQHITVIKGKIEEVELPEKADILISEPMGTLLLNERMLETYVIARDRFLSPTGKMFPTMGRIHMAPFSDEYLYVEIANKALFWQQQNYYGVDLTPLHGSAFQGYFSQPVVDAFDPRLLVAPPISHTIDFTKVKEEELYEIDIPLNFTASVGTRVHGLACWFDVLFNGSAVQRWLTTAPGAPTTHWYQLRCVLSQPIYVMAGQVITGRLHMVAHSAQSYTMYLTMSAKMWGAGADQGGILQTSSSKLDLKEPYYRMSQPQVYAWSQDQSTQQLVQQQANGLPSQQVDGTILVQQQPIQASVILQQQQHQQQSSQNFQQQSLFLQSQ*

Protein Length: 564

Fln nts: ATGGGGAAGACACTTTTATTTCATCGCAATTTATTGTTGGAGTTGGAGTTGGAGTTGGAGTTGCAGTTGCAGAGAGAAGGCACGCAAGTGGGACATATAAGAAGCATAGAGGATCAGCGGCAGCGAGGCTTTTGCGGTCCCTCGACCATCTTCTTTGTGTTTTGTTGCTGTGGGTGTGAATCACAAAACCCTAATTTCCATTGAATCCTGTAAAACCTTGGCTACGCTAACTGCTGCTCTTAGGTAGGAGT_-_ATGGCTCAAAATCATTCACTGGTTCCTCCTGAATCGCCGGTGTTCTCAGAGCTGTCGATCGTGGTGGTGCCGTCGAATAAATGGGTCCCGGCTGTTGCCCGCTTTGGCCGTGACGCCTCTGGCCGATTTATAGAATTCAAGTCCTCCGCCGATTCAACGGAGTCTTTCGATATCAAAACCTATATCCATCATTCTCAGCTTTTTAGAATGGGGCCCACTTTGTCAATGTGGGTAGCAAATGATAATTCATCAACCTATGGAGCAGAGAGCATCTGTCAAGCCATTACGATTCAATTCCCAACAGAAGCAGCAGTCTTTTCATTTGGTTTGACTGTTCAGGAGTGGAATACAGATACATCAGTTGCAGGAGCTGGGGAGAAGTTGGCCAATGGTTCAAGTGATTCATCTTGGAAACTTAACAAGTTTGATAAGAAGATTGAAGCATCATCTGCAAAAATGTATTTCCACTATTATGGGCAACTTCTTCACCAGCAGAACATGTTGCAAGATTATGTGCGGACAGGGTCATATTATGCCGCAGTCATAGAAAACCGTATAGATTTTCATGGTCGCATTGTTGTTGATGTGGGGGCTGGAAGTGGAATTCTCTCTCTGTTTGCAGCACAGGCTGGTGCAAAGCATGTCTATGCTGTGGAAGCATCAGAAATGGTAGATTATGCACGCAGACTTGTTGCTGGAAATCCATCTTTGGGTCAGCATATAACAGTGATCAAGGGGAAAATTGAAGAGGTTGAGTTGCCAGAGAAAGCAGATATTCTAATATCAGAGCCCATGGGAACATTATTACTCAATGAAAGGATGCTAGAAACATATGTTATTGCGAGGGACAGGTTCCTTAGTCCTACTGGAAAAATGTTTCCCACTATGGGCAGGATACATATGGCTCCTTTTAGTGATGAGTATCTATATGTTGAAATTGCAAACAAGGCTTTGTTTTGGCAACAACAAAATTACTATGGTGTTGACTTGACACCATTGCATGGTTCTGCGTTTCAGGGCTATTTCTCCCAGCCTGTTGTAGACGCTTTTGACCCAAGATTGCTTGTGGCCCCTCCTATCTCTCACACAATTGACTTTACAAAGGTCAAGGAAGAAGAGTTGTATGAAATTGACATTCCCTTGAACTTTACTGCATCTGTGGGCACTCGAGTTCATGGCCTAGCATGTTGGTTTGATGTTTTATTCAATGGAAGTGCTGTACAACGATGGCTGACTACTGCACCTGGAGCTCCAACTACGCACTGGTATCAACTTCGTTGTGTCTTGTCTCAACCTATTTATGTAATGGCTGGACAGGTTATTACAGGTCGGCTCCATATGGTTGCCCATAGTGCACAGAGCTATACTATGTATCTCACGATGTCAGCGAAGATGTGGGGTGCTGGCGCTGATCAAGGTGGTATATTGCAAACTTCTTCAAGCAAGCTTGATCTAAAGGAACCATATTATCGCATGTCTCAACCTCAAGTTTATGCCTGGTCTCAGGATCAATCTACTCAGCAACTAGTGCAGCAGCAGGCAAATGGACTTCCATCACAGCAAGTTGATGGCACAATCCTTGTTCAACAGCAGCCCATACAAGCTTCTGTGATTTTGCAACAGCAACAGCACCAACAACAGTCATCTCAGAATTTCCAACAGCAATCTCTGTTTCTCCAATCACAATAG___AAATTTGGATTAAGCATGTATCAGTATCTACATTTTTTCTTAGTGCTGGTCAATTCCTGTGTATTCTTATAGATATGATGTTCAAGATCCCAGCAAGGTTTAGCAAGGTATAGCCTTTTTGAAATATAATGTGTGACGGTCCTATAATTTAATGGGAAAGTAGGGGGAAATTTATTCGGGCACTTGAGAATTTCACTTTGTATTTGAACATTGAAAAAGTGTATTCGGTCCTCATTGGCATCCGCAATAGTAGTTAGAAATTTTAAAGTCAATAATTTTCTGTTCGGGCGGAGGTTCAGGAAACCAATATGATTATCTTCCTGCTGTCTTACGTCAAACTATGTTTTGGAACCTCAAATATTTAATCTTAGCCTCCAAGTAGGTGCCATTTCTTACAGGTTGATAAATGTATTGACATGTTTTAGGAACGTACATGTGAAGCCTACTTAAATTTGGTTCCTGTCGTAGTTGCTTGTGTCTTGACAAATGCAGTTGGTCCTTTCCACTGAACGCCTATCA

Fln Alignment:

Contig6162___MYFHYYGQLLHQQNMLQDYVRTGSYYAAVIENRIDFHGRIVVDVGAGSGILSLFAAQAGAKHVYAVEASEMVDYARRLVAGNPSLGQHITVIKGKIEEVELPEKADILISEPMGTLLLNERMLETYVIARDRFLSPTGKMFPTMGRIHMAPFSDEYLYVEIANKALFWQQQNYYGVDLTPLHGSAFQGYFSQPVVDAFDPRLLVAPPISHTIDFTKVKEEELYEIDIPLNFTASVGTRVHGLACWFDVLFNGSAVQRWLTTAPGAPTTHWYQLRCVLSQPIYVMAGQVITGRLHMVAHSAQSYTMYLTMSAKMWGAGADQGGILQTSSSKLDLKEPYYRMSQPQVYAWSXXXXXXXXXXXQANGLPSQQVDGTILV
D5ABX2______________MYFHYYGQLLHQQNMLQDYVRTGSYYAAVIENRIDFHGRIVVDVGAGSGILSLFAAQAGAKHVYAVEASEMVDYARRLVAGNPSLGQHITVIKGKIEEVELPEKADILISEPMGTLLLNERMLESYVIARDRFLSPTGKMFPTIGRIHMAPFSDEYLYVEIANKALFWQQQNYYGVDLTALHGPAFQCYFSQPVVDAFDPRLLVAPPISHTIDFTKVKEEELYEIDIPLNFTASVGTRVHGLACWFDVLFNGSAVQRWLTTAPGAPTTHWYQLRCVLSQPIYVMAGQVITGRLHMVAHSAQSYTMYLTMSAKMWGAGADQGGILQTSSSKLDLKEPYYRMSQPQVYAWSQDQSTQQLVQQQANGIPSQQVDGTILV

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1708	66		33		0.997452
2203	10		90		0.90298
2218	12	87			0.992554
2219	12			87	0.992554
2220	75	12		12	0.975346
2222			85	14	0.993533
2223	85			14	0.993533
2243	20		80		0.995493
2287		88		11	0.923564
2288		88		11	0.923564
2292	37		62		1.0
2307	25			12	1.0
2308	87			12	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
2397	2424	CAACTC CAACTC CAACTC CAACTC CAAC	28

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain