SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6143

Length: 1103 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6143

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative S-locus protein kinase [Arabidopsis thaliana] sp\|O64776.2\|Y1144_ARATH RecName: Full=G-type lectin S-receptor-like serine/threonine-protein kinase At1g61440; Flags: Precursor gb\|AEE33838.1\| putative S-locus protein kinase [Arabidopsis thaliana]	-	-	2.0e-10	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%

Source	Gene names
Sma3	AT4g27300; At4g27300; B120; GSVIVT00006137001; GSVIVT00006931001; GSVIVT00020409001; OSJNBa0088I06.18; Os05g0493100; OsI_20442; OsJ_19036; POPTRDRAFT_1119652; POPTRDRAFT_232142; POPTRDRAFT_268902; POPTRDRAFT_268913; POPTRDRAFT_268982; POPTRDRAFT_582053; P

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	recognition of pollen	GO:0048544	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Cadherin	IPR002126	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR012335	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G61400.1	S-locus lectin protein kinase family protein chr1:22654638-22657774 REVERSE LENGTH=819	8.0e-14	56%
RefSeq	Arabidopsis thaliana	NP_176335.2	S-locus lectin protein kinase family protein [Arabidopsis thaliana]	1.0e-13	56%
RefSeq	Populus trichocarpa	XP_002330371.1	predicted protein, partial [Populus trichocarpa]	5.0e-13	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLN9

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 118 aas, your sequence is shorter than subject: 350 - 565

Fln protein: IH*YFLMHT**IEFTHWLRFY*CSYYMLAGSQDFVLNSGDELNFNHKFSPPFQRI*GKQLHSHFSSILSSSLVYRPNPPSPSWLSSRKFWVTVTNVSISNTICRSSVISPHSSTCSRKKV*ITSAVLKHTQKIERSVYPGKWISIISRYCSRDLQNDDCETRVRVVKGHSISCRYIF*CSCVFCLCSCAGMRTDQS*SENNV*DGKIVAAAQIFHDHKKLGLGGFGPVYKVA*PKKVYTSF*NLKSPQP*PLYFQQPGNLYRRPLSLIPLKENLHSSVFHVCIEREFV*FSQGTTQDGREIAVKKLS*NSLRRRSEFLNEVKLVAKIQHRNLVSLLGCCTEGSKGCLSP*

Protein Length: 351

Fln nts: ATACATTAATACTTTTTAATGCACACGTAATAAATAGAATTTACTCACTGGTTAAGGTTTTATTAATGTTCCTATTACATGCTAGCAGGTTCACAAGATTTCGTGCTGAATTCTGGCGATGAGCTTAACTTTAATCATAAATTCTCTCCTCCTTTTCAAAGAATTTAAGGAAAGCAGCTTCACAGCCATTTCTCTTCCATCTTGAGCAGCTCCCTTGTATACAGGCCGAATCCTCCCAGTCCAAGCTGGTTATCATCACGAAAATTTTGGGTAACAGTTACCAATGTTTCCATCTCAAACACTATTTGCCGATCCTCAGTAATCAGCCCTCATTCCTCCACTTGTTCACGAAAAAAAGTCTGAATCACTTCAGCCGTCTTGAAGCACACGCAAAAAATTGAAAGATCAGTCTATCCTGGCAAATGGATCTCGATTATCTCAAGATATTGTTCAAGGGATCTGCAAAATGATGATTGCGAGACCCGAGTTAGGGTCGTAAAAGGGCATTCAATTTCTTGCCGCTATATTTTCTGATGTAGCTGTGTCTTCTGCTTGTGCAGTTGCGCAGGAATGCGGACTGATCAGTCATAATCCGAAAATAATGTTTAAGATGGAAAAATTGTAGCTGCTGCTCAAATTTTTCATGATCATAAGAAGCTTGGACTGGGAGGATTTGGCCCTGTATACAAGGTAGCATAACCCAAGAAAGTTTATACTAGTTTTTAGAATCTTAAATCACCACAGCCTTGACCCTTGTACTTCCAACAGCCTGGAAACTTGTATAGAAGACCATTAAGCTTAATTCCTCTAAAAGAAAATCTTCATTCGTCTGTCTTTCATGTCTGTATAGAGAGAGAATTTGTCTGATTCTCTCAGGGAACTACTCAAGATGGAAGAGAAATAGCTGTGAAGAAGCTGTCTTGAAATTCTTTGCGAAGGAGGAGCGAATTTCTGAATGAAGTTAAGCTCGTCGCCAAAATTCAGCATCGAAATCTTGTGAGCCTACTAGGTTGTTGCACAGAGGGATCAAAAGGTTGCTTGTCTCCATGAGTGCCTGCCAAATAACGACGTATAAAATCTGATTCAGTGAGTAACTTCCCCAT

Fln Alignment:

Contig6143___SLIPLKENLHSSVFHVCIEREFV*FSQGTTQDGREIAVKKLS*NSLRRRSEFLNEVKLVAKIQHRNLVSLLGCCTEGSKGCL
B8LLN9______________TLVAATENFHDN--NKIGEGGFGAVYKGITPEGNEIVVKRPSLNSRHATEVYLNEANLVPKIQHRNLVKLLGCCQEGPERLL

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
459		13		86	0.999973
482		86		13	0.999973
484		86		13	0.999973
532		15		84	0.999986
533		15	84		0.999986
560		10	90		0.90298
561		11		88	0.923564
562		11	11	77	0.968132
563	22		77		0.999999
564		88		11	0.923564
571	85			14	0.993533
573		14		85	0.993533
665	20	80			0.995493
682	16			83	0.994512
893			94	5	0.998894
900	94	5			0.998894
901	94	5			0.998894
910		6	93		0.99903
912	93	6			0.99903
915	93	6			0.99903
1006	84	16			1.0
1008		16		84	1.0
1010			84	16	1.0
1017	10		90		0.999898
1018	10	89			0.999919
1042		15	84		0.999986
1045		27		72	1.0
1047		54		36	1.0
1056	25	75			0.996473
1058	25			75	0.996473
1059		25	75		0.996473
1062	66	33			0.997452
1064	33		33	33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain