SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6127

Length: 2203 nt

UniGene Fasta

>sp_v3.0_unigene6127
ATGGGGATAGAATGAGTAAACTTACACCGATCGACCGGGAGACCACGCTACCTCGTGAATGCCTAAAATATCACAAACCTTTGAAGAAAATTTGGGGAATGGTCCCGCCATTCCATCACGGGTCCCATCCATCCATACAGGTCACCTACTCACAGTAACAATAACAAATGCCACATATAACAATTAGAACACTTAACTGGAGGCCTGTTCTTGATGCAATGTGCAGAATCCGCAATATTATTTGAATGGTGGATTCTTTTTTAACCTGAGTCAAACTTCTTGGTGATTTTGAAATGGGTTTGGTTTTAGGTATATTTAGTCTTTACACTTGTTTTGGATGCGTTGTTCATAGCTGTCCTTGCTGATGATAATTGAGCTCATCAGCCCAATGCTTGGTCTATTGGACTCAGCATCATGATCGCTGTTGAAACCAAGAGACAGATGTGGGCAACCTGAATTACGTGATCGGCAAAAAAATACCAGTGAAAGCTGAAGCATCTTTGTAGGTTTTGAGAATCTTTGGCCCCGTGATTTTATCAAGAAAACCAACAGAATTCACATTGGTATTGTGCTTTTATCAAGGAAACCCACCTGCCATTCGAAAAAACAGAAAAACTCATTTGGGTATATTGTGATTTTGTGAAGAAAGCCTGTTGGGTATAGCAGGATCTGCTTCATTGTGTGAAGGTTTTGTACGTTTGGCCTGATATTGTCTACCATGGGAGGACTGGGTCCTATGGATGTTGAAAGAAAAGGCTCCATGGATTGGGGAAGAGGCAATAAAACGATCTATCCAATGCAGGACTCCCCGAGGCCTGCGGCAGTCCCATACTTCGAGGCCAGGCCTAACAGGAGGAGGAGTTCATGGATTATTTCACTATTTGTGGTGCTGAATACTGTGATATTCATCGTGGCAATGTTTATCAATGACTGTCCGAAGGATTTAGGTGACAATTGCACCCTGAAGTTTTTGGGGAGGTTCTCATTCCAGCCCCTCAAGGAGAATCCTCTTTTTGGACCTTCATCGGCCACTTTACAAAAGATGGGAGCTCTTGAGTGGACTAAGGTGGTCAAGGAGCACCAGGGATGGCGGCTTATCACATGTATCTGGTTGCATGCTGGGGTCATTCATCTACTTGCCAATATGTTGAGTCTCATATTTATAGGGATTCGCTTGGAGCAGGAATTTGGTTTTGTGAGGATTGGAATAGTCTACCTAGTCTCTGCTTTTGGTGGTAGTGTGTTGTCAGCACTTTTCAACCAGAATGGTGTATCTGTTGGCGCATCTGGTGCATTATTTGGTTTATTGGGGGCGATGCTTTCAGAGCTTATTACTAACTGGACAATTTATGCCAGTAAGTTTGCAGCATTGGTAACACTACTTTTCATTATTGTCGTCAACTTGGCTTTTGGGATACTACCACATGTAGACAACTTTGCCCACATTGGAGGATTTATATCAGGATTTCTTCTTGGATTTGTGTTTCTGATGCGGCCTCAGTTTGGATGGGTGAATCGCAAGAACATTCCGCCTGGATATGCTGTGAACTCTGTTGTCAAATCTAAGCACAATGTATATCAATATACACTAGGGTTGTTATCACTTATTCTTCTTATTGTCGGATTTACTGTTGGCTTGGTGTTGCTTTTCCATGGCGTCAATGCAAATAAGCACTGCAGCTGGTGCCATTATTTAGATTGCGTGCCGACATCCAGGTGGTCTTGTAATGATGGAGTGATTACTTGCCAGGAAATTCAAAGTGACAGTGATTTCACACTGATTTGTCAAAATGGTGGCAAGAGTAAGGTCTATCCATTCCAAAGTATAACTGAAGCCAAGAAAAGGCAGCTTTGTAGTCAACAGTGCTCTTAATTTCATATGTACATGCACAAACATACGTATTAGAAAATATTGAAGGGTTGTTTAAGTAATATTTTCGATTCTACTACAGTCTTTACAGGTTGTAAATTAATAACTCGGAACAAGTCATTACACTACTTGCTATTCTTTATCAATAAATGGCTAAGATCTTGATATTGAGTTGGCTAATATATTTCTTTCTTCTGTGTAGTCATGTGTTCTGTAATGTTTCTATTCCATTCACTATCTAGCATATAAGTGTGTCTAAGGGAATAGGCAGATTGGTAAGACTGGTATGATACTTGAATTATGTTATGGAGTGGAAACCCAAGGGAGCAGGGT

Ace file of the UniGene sp_v3.0_unigene6127

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	KOM, putative n=1 Tax=Ricinus communis RepID=B9T4C7_RICCO	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S54, rhomboid	IPR002610	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G29050.1	ATRBL1, RBL1 RHOMBOID-like 1 chr2:12478245-12480121 FORWARD LENGTH=389	62%
RefSeq	Arabidopsis thaliana	NP_180469.3	protein RHOMBOID-like 1 [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002321905.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKV6

Fln msg:

Fln protein: MGGLGPMDVERKGSMDWGRGNKTIYPMQDSPRPAAVPYFEARPNRRRSSWIISLFVVLNTVIFIVAMFINDCPKDLGDNCTLKFLGRFSFQPLKENPLFGPSSATLQKMGALEWTKVVKEHQGWRLITCIWLHAGVIHLLANMLSLIFIGIRLEQEFGFVRIGIVYLVSAFGGSVLSALFNQNGVSVGASGALFGLLGAMLSELITNWTIYASKFAALVTLLFIIVVNLAFGILPHVDNFAHIGGFISGFLLGFVFLMRPQFGWVNRKNIPPGYAVNSVVKSKHNVYQYTLGLLSLILLIVGFTVGLVLLFHGVNANKHCSWCHYLDCVPTSRWSCNDGVITCQEIQSDSDFTLICQNGGKSKVYPFQSITEAKKRQLCSQQCS*

Protein Length: 386

Fln nts: ATGGGGATAGAATGAGTAAACTTACACCGATCGACCGGGAGACCACGCTACCTCGTGAATGCCTAAAATATCACAAACCTTTGAAGAAAATTTGGGGAATGGTCCCGCCATTCCATCACGGGTCCCATCCATCCATACAGGTCACCTACTCACAGTAACAATAACAAATGCCACATATAACAATTAGAACACTTAACTGGAGGCCTGTTCTTGATGCAATGTGCAGAATCCGCAATATTATTTGAATGGTGGATTCTTTTTTAACCTGAGTCAAACTTCTTGGTGATTTTGAAATGGGTTTGGTTTTAGGTATATTTAGTCTTTACACTTGTTTTGGATGCGTTGTTCATAGCTGTCCTTGCTGATGATAATTGAGCTCATCAGCCCAATGCTTGGTCTATTGGACTCAGCATCATGATCGCTGTTGAAACCAAGAGACAGATGTGGGCAACCTGAATTACGTGATCGGCAAAAAAATACCAGTGAAAGCTGAAGCATCTTTGTAGGTTTTGAGAATCTTTGGCCCCGTGATTTTATCAAGAAAACCAACAGAATTCACATTGGTATTGTGCTTTTATCAAGGAAACCCACCTGCCATTCGAAAAAACAGAAAAACTCATTTGGGTATATTGTGATTTTGTGAAGAAAGCCTGTTGGGTATAGCAGGATCTGCTTCATTGTGTGAAGGTTTTGTACGTTTGGCCTGATATTGTCTACC_-_ATGGGAGGACTGGGTCCTATGGATGTTGAAAGAAAAGGCTCCATGGATTGGGGAAGAGGCAATAAAACGATCTATCCAATGCAGGACTCCCCGAGGCCTGCGGCAGTCCCATACTTCGAGGCCAGGCCTAACAGGAGGAGGAGTTCATGGATTATTTCACTATTTGTGGTGCTGAATACTGTGATATTCATCGTGGCAATGTTTATCAATGACTGTCCGAAGGATTTAGGTGACAATTGCACCCTGAAGTTTTTGGGGAGGTTCTCATTCCAGCCCCTCAAGGAGAATCCTCTTTTTGGACCTTCATCGGCCACTTTACAAAAGATGGGAGCTCTTGAGTGGACTAAGGTGGTCAAGGAGCACCAGGGATGGCGGCTTATCACATGTATCTGGTTGCATGCTGGGGTCATTCATCTACTTGCCAATATGTTGAGTCTCATATTTATAGGGATTCGCTTGGAGCAGGAATTTGGTTTTGTGAGGATTGGAATAGTCTACCTAGTCTCTGCTTTTGGTGGTAGTGTGTTGTCAGCACTTTTCAACCAGAATGGTGTATCTGTTGGCGCATCTGGTGCATTATTTGGTTTATTGGGGGCGATGCTTTCAGAGCTTATTACTAACTGGACAATTTATGCCAGTAAGTTTGCAGCATTGGTAACACTACTTTTCATTATTGTCGTCAACTTGGCTTTTGGGATACTACCACATGTAGACAACTTTGCCCACATTGGAGGATTTATATCAGGATTTCTTCTTGGATTTGTGTTTCTGATGCGGCCTCAGTTTGGATGGGTGAATCGCAAGAACATTCCGCCTGGATATGCTGTGAACTCTGTTGTCAAATCTAAGCACAATGTATATCAATATACACTAGGGTTGTTATCACTTATTCTTCTTATTGTCGGATTTACTGTTGGCTTGGTGTTGCTTTTCCATGGCGTCAATGCAAATAAGCACTGCAGCTGGTGCCATTATTTAGATTGCGTGCCGACATCCAGGTGGTCTTGTAATGATGGAGTGATTACTTGCCAGGAAATTCAAAGTGACAGTGATTTCACACTGATTTGTCAAAATGGTGGCAAGAGTAAGGTCTATCCATTCCAAAGTATAACTGAAGCCAAGAAAAGGCAGCTTTGTAGTCAACAGTGCTCTTAA___TTTCATATGTACATGCACAAACATACGTATTAGAAAATATTGAAGGGTTGTTTAAGTAATATTTTCGATTCTACTACAGTCTTTACAGGTTGTAAATTAATAACTCGGAACAAGTCATTACACTACTTGCTATTCTTTATCAATAAATGGCTAAGATCTTGATATTGAGTTGGCTAATATATTTCTTTCTTCTGTGTAGTCATGTGTTCTGTAATGTTTCTATTCCATTCACTATCTAGCATATAAGTGTGTCTAAGGGAATAGGCAGATTGGTAAGACTGGTATGATACTTGAATTATGTTATGGAGTGGAAACCCAAGGGAGCAGGGT

Fln Alignment:

Contig6127___GLGPMDVERKGSMDWGRGNKTIYPMQDSPRPAAVPYFEARPNRRRSSWIISLFVVLNTVIFIVAMFINDCPKDLGDNCTLKFLGRFSFQPLKENPLFGPSSATLQKMGALEWTKVVKEHQGWRLITCIWLHAGVIHLLANMLSLIFIGIRLEQEFGFVRIGIVYLVSAFGGSVLSALFNQNGVXXXXXXXXXXXXXXXXXELITNWTIYASKFAALVTLLFIIVVNLAFGILPHVDNFAHIXXXXXXXXXXXXXXMRPQFGWVNRKNIPPGYAVNSVVKSKHNVYQYTXXXXXXXXXXVGFTVGLVLLFHGVNANKHCSWCHYLDCVPTSRWSCNDGVITCQEIQSDSDFTLICQNGGKSKVYPFQSITEAKKRQLCSQQCS
B8LKV6______________GSGPMDIERKGSMDWGRGNKVIHPMQDSPRPAAVPYFEARPNRRRSSCIISLFVVLNIVIFLVAMFINDCPKDLGDSCTLKFLGRFSFQPLKENPLFGPSSSTLEKMGALEWQKVVKEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQEFGFARIGTVYLVSAFGGSVLSALFNQNGVSVGASGALFGLLGAMLSELITNWTIYASKFAALVTLVFIIVVNLAFGLLPHVDNFAHIGGFISGFLLGFVFLMRPQFGWVNRKIIPPGYDVNSVVKSKHNAYQYILGLLSLILLIVGFTVGLVLLFHGVNANKHCSWCHYLDCVPTSRWSCNDGVIACQETQSDTEFTLICQNGGKSKIYPFQNISEAKKRQLCLQQCS

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
582		75	25		0.996473
583	75		25		0.996473
584	75		25		0.996473
628			60	40	1.0
698	83		16		0.994512
1014		10		90	0.90298
1202	83			16	0.999991
1455		12	87		0.992554
1504	10		90		0.90298
1506			10	90	0.90298
1507			10	90	0.90298
2026	15		84		0.999986
2041		11	11	77	0.968132
2042		12		87	0.992554
2044	85	14			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain