SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6113

Length: 1597 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6113

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam05577, Peptidase_S28, Serine carboxypeptidase S28	-	-	0.0	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Lysosomal pro-X carboxypeptidase, putative	-	-	3.156e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Lysosomal Pro-Xaa carboxypeptidase.	EC:3.4.16.2	-	8.451e-31	-

Source	Gene names
Sma3	At2g24280; At5g22860; At5g65760; B1143G03.2; F6H11.120; GSVIVT00005095001; GSVIVT00008186001; GSVIVT00008376001; GSVIVT00010656001; GSVIVT00011535001; GSVIVT00018074001; GSVIVT00021554001; GSVIVT00022119001; GSVIVT00022120001; GSVIVT00022122001; GSVIVT000

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	carboxypeptidase activity	GO:0004180	Molecular Function	-
Sma3	serine-type peptidase activity	GO:0008236	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S28	IPR008758	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G24280.1	alpha/beta-Hydrolases superfamily protein chr2:10334622-10336927 FORWARD LENGTH=494	63%
RefSeq	Arabidopsis thaliana	NP_850050.1	alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002324555.1	predicted protein, partial [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPX2

Fln msg: your sequence is shorter than subject: 471 - 509

Fln protein: MRLRSVNLVEAKGKEKQTLLEYETRYFGQILDHFTYTPRSYRVFQQKYLINDKHWGGAESRAPIFVYTGNEGDIEWFANNTGFMFEIAPRFQALLVFIEHRFYGNSMPFGDKINSYKSTETLGYLNSQQALADYATLILDLKKNLSAQASPTIVFGGSYGGMLAAWFRLKYPHVAIGAVASSAPILQFDNIVPENTFYDIVSNDFKQASESCFSVIRQSWDDLQEKSTEDGGLHEISKIFRTCKDLESINPVRSWLEEAFTYTAMTDYPTETNFLMPLPAYPVTEMCNVINSFPQGTDTLSRVFAAANIYYNYSNTEKCFEMEHESDAHGLSGWDWQACTEMVMPMNYSVESIFPPSSYDYLSYQRYCQKRYGVIPRPHWITTEFGGHDISTVLQHSASNIIFSNGLMDPWSGGGVLRNISDSVVALVAQKGAHHGDFRFSTSEDPDWLVQQRRQEVELIESWLQEYYNH*

Protein Length: 472

Fln nts: CCTGGTATCATTTCTATCTTTGCAGGTTGGTGCTGATGGAGATAGAGCTGGTCCTCTGTTGGGTCTCCATGAGAGGAGCTATAGCGGCCGA_-_ATGAGGTTGCGGTCTGTTAATTTGGTGGAAGCAAAAGGAAAAGAGAAGCAGACCCTGCTTGAGTACGAGACGCGTTATTTTGGTCAGATTTTGGATCATTTCACATATACACCTAGAAGCTATAGAGTCTTTCAGCAAAAATATCTCATCAATGACAAGCATTGGGGAGGGGCCGAGAGCAGGGCACCTATATTTGTTTATACGGGTAACGAGGGAGATATTGAGTGGTTTGCCAATAACACAGGCTTCATGTTCGAGATTGCGCCTAGGTTTCAAGCTTTGCTCGTCTTCATTGAGCACCGCTTCTATGGGAACTCAATGCCATTTGGGGACAAGATCAACTCTTACAAGAGCACAGAAACATTGGGATATCTTAATTCCCAGCAGGCCTTGGCAGATTATGCCACTCTCATATTAGATTTGAAGAAGAATCTGTCTGCCCAAGCCTCCCCAACTATAGTTTTCGGCGGTTCTTATGGTGGAATGCTAGCTGCTTGGTTCCGACTGAAATATCCCCATGTAGCCATTGGGGCTGTTGCATCATCTGCGCCCATCTTGCAGTTCGATAATATTGTGCCTGAAAATACCTTCTATGACATTGTTTCAAACGATTTCAAGCAAGCAAGCGAGAGTTGTTTCAGTGTTATCAGACAATCATGGGACGATCTACAAGAGAAATCCACGGAAGATGGAGGTCTACACGAGATAAGCAAAATTTTCCGAACTTGCAAGGATCTCGAAAGTATAAATCCTGTCAGGTCCTGGCTGGAAGAGGCTTTCACTTACACTGCAATGACTGACTACCCAACTGAGACTAATTTTCTGATGCCTCTACCTGCATACCCTGTAACAGAGATGTGCAATGTAATTAACAGCTTCCCCCAAGGGACTGACACCCTATCAAGAGTATTTGCTGCTGCTAACATATACTACAATTATTCAAACACAGAGAAGTGCTTCGAAATGGAGCATGAAAGCGATGCTCATGGTCTCAGTGGATGGGACTGGCAGGCCTGTACAGAAATGGTAATGCCGATGAATTATTCAGTTGAGAGCATTTTCCCACCTTCTAGTTATGACTACCTTTCATATCAACGCTATTGCCAAAAGCGGTATGGAGTGATACCAAGACCACACTGGATAACAACAGAATTCGGCGGTCATGATATTAGCACTGTTCTCCAACACTCTGCAAGCAATATCATCTTTTCAAATGGGTTAATGGATCCATGGAGTGGGGGAGGAGTACTCAGGAATATATCAGACAGCGTTGTAGCGCTAGTTGCCCAAAAAGGAGCCCACCATGGTGATTTTCGTTTCTCGACAAGTGAAGACCCTGACTGGCTGGTACAGCAGCGCAGGCAAGAGGTTGAGCTTATTGAAAGCTGGTTGCAGGAATACTACAACCACTGA___TTGCCTCTGGATAATGCAATCGTAAATTGATTGTTTTTCCTCTTTCGATTTTGGGTTAAAGATGTCAAGGACATTTGACCTATTGACTACATT

Fln Alignment:

Contig6113___MRLRSVNLVEAKGKEKQTL----LEYETRYFGQILDHFTYTPRSYRVFQQKYLINDKHWGGAESRAPIFVYTGNEGDIEWFANNTGFMFEIAPRFQALLVFIEHRFYGNSMPFGDKINSYKSTETLGYLNSQQALADYATLILDLKKNLSAQASPTIVFGGSYGGMLAAWFRLKYPHVAIGAVASSAPILQFDNIVPENTFYDIVSNDFKQASESCFSVIRQSWDDLQEKSTEDGGLHEISKIFRTCKDLESINPVRSWLEEAFTYTAMTDYPTETNFLMPLPAYPVTEMCNVINSFPQGTDTLSRVFAAANIYYNYSNTEKCFEMEHESDAHGLSGWDWQACTEMVMPMNYSVE-SIFPPSSYDYLSYQRYCQKRYGVIPRPHWITTEFGGHDISTVLQHSASNIIFSNGLMDPWSGGGVLRNISDSVVALVAQKGAHHGDFRFSTSEDPDWLVQQRRQEVELIESWLQEYY
B8LPX2______________LRPRTLGEFSTLNREKSFLQSSQYEYETKYFTQRLDHFSFKNHKNSTFQQRYLINDKYWLGAERMGPIFYYCGNEGYIDWFAVNTGFMWDIAPQFGALLVFPEHRYYGESMPYGSQSMAYKDGDSLSYLTAEQALADFATLIVDLKKNLSAEACPVVLFGGSYGGMLAAWMRLKYPHIAIGALASSAPILQFEDIVPSDTFYNLVSNDFKRESENCFKVIQQSWKALETYGERDEGLQNLSKKFRMCRDLNSTDEIEDWLNSAYSNLAMVDYPYPASFLMPLPAYPIKEVCKVIDSFSNGTDVLDRIFAGVSVYYNYTGEEKCFDV--NDDPHGENGWNWQACTEMVMPMSSNPESSIFPQFTFDIESYTKNCLNMFGVEPRPHWITTEFGGQDIKRVLKNYGSNIIFSNGLLDPWSGGGVLQNISNSIVALVTELGAHHLDLRAATENDPLWLVEQRNAEMKIINKWMNEYY

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
993	25			75	0.996473
1296	80		20		0.995493
1362	11		88		0.923564
1409		16		83	0.994512
1488	37		62		1.0
1500	12	87			0.992554
1518	83		16		0.994512
1527		75		25	0.996473
1528			66	33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
706	718	CAAG CAAG CAAG C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain