SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6103

Length: 2273 nt

UniGene Fasta

>sp_v3.0_unigene6103
CGTCGTGACCTTGGCTGTCACTCAGATGCCCGTTTTTGTTTTAAAAAAGGGACTTCACGAACCTAATTACTCAAATTTATTCGTGCGAATTCTGAATCGTGGAACCGAAGATTTCTGGGCAAACATATACCACTGTACCCTAAGAAAAAACGCGGGTAGAAGATTATTCAACCATGAACTAGTTGCTGTGCAAACTGATGAAAATGGAAAAGAGGGGCAGAGCAGCAGTAGTGGTGCTTGGTGACTTAGGACGTAGTCCTCGTATGCAATATCATGCTCTTTCTTTTGCGCGGCAGGCTTGCTTTGAGGTTGATATTGTTGCATATGCAGGAACGGAACCTCATGCTGCTGTTTTGGAACATCCATCTATTCATCTTCATTTGATGCGACAACCTATTCCACCTGGCCTGCCACGATTTCTCTATCTTTTAGCACTTCCTTTTAAGACAATAATTCAATTTGCCATTCTACTTTGGTTCATTTGCGTTAAGATACCATCACCAGATTTTTTCCTCGTACAGAATCCTCCTTCCGTCCCAACTTTGATTGCTGTAAGATGGGCATGCTGGATAAGAAAGTCTGCTTTCCTCATTGATTGGCACAACTTTGGTTATACTCTTCTGGGCTTGACTCTTGGGAAATTACATCCACTTGTGAAAATATACTACTGGTGTGAGAAGCGTTATGGAAAAATGGCTGATGGATGCTTGTGTGTTACAAAAGCCATGCAGCACGAATTAGCTCAGAACTGGGGCATAAAAAAAGCAACTGTTGTATATGACCGATCTCCAGAATTTTTCCATCCTACACAACTAAAGGAGAAGCATGAGTTATTTTGCAGATTGAACAAGGATATTGCAAATCCACTTGGCATCCACGATTGTTGCAGTGATGGTGACATAGATCAAGGAATGCAGATTGTTTCAGTAACAGAAGATGCAACAAGTCTAGCCACCAGGACTGATGGTGCTGGTGCTTCATGTTCCAGAGCAGCAGATTGTGATGTCACTTGTGATGCATGGAATAAACAAGGGATGATAACAACTCCAGAGAGGGTGGAGTACACCCTATTTACTAATCGTGTGGTTGCAAGAGACAATCAAGGTCACAAGGATGATGAAAGCATCTCATTGAATGAAAACAGACCAGCACTTATTGTGAGCAGTACTAGCTGGACTCCGGATGAAGATTTCAGCATTCTTTTGGAGGCAGCAATTATGTATGATAGGCGTGTAGCTGCAATTTTAAATGAATTTGATTCTATATCAGAGGAAAGTCTTTGGAAGGATTTCACCAAGGGGAAGCAGTTTTCATTTCCAAGATTGCTGTTTATTATTACAGGAAAGGGTCCAGAAAGAGAAAAATATGAGGAGAAAATAAGGAAGTTGCATCTCAAACGTGTAGCATTTCGTACAATGTGGTTATCTGCTGCCAATTATCCTTTATTGCTTGGATCAGCTGATCTAGGTGTTTGTCTGCATACATCTTCATCTGGATTAGATCTCCCTATGAAGGTTGTAGATATGTTTGGATGTGGGTTACCAGTGTGTGCTGTTTCATATTCATGCATAAAGGAGCTCGTCAACGTTGATGAAAATGGGCTTTTATTCGCTTCCTCTTCAGAGCTGGCTGATCAGCTATTGGAATTATTTAAGGGGTTTCCAAGCTCATGTGATTTACTGAGTTCGCTAAGAAGAGGGGCTCTTGCAACTGGATCAGCTGCAAAATGGGCCAGTGAGTGGGAAGAGCATGTCATGCCTCTTGTAACAGAGGTCATGAATAGAAGACTGTGATCAAGATTCTTACTTTATAAAGACCAAAGGTGGCGAAAGCTCTGTGGAACCTCGGGTTTGACAGGACCGTTTAAAGTGAACACGGTAATATTTACTGTGAGAAGTCTGTAACACTGCATACCATTATATTTACTCTTTTAAGCCTTTGCCACACCCCTTACTTTGAACACTACCATTTTCTTGTTTAGAAGCAGAGAGTTGTAGCTTACAAAAATTCAGCTTGGAAAGATTGCTGAAAGAACATTTAGTGTGATTGGTCGACTGATGCGTACAATTTTCTGAACAATTTTGTGTAATGAAAATTCCATAATGGGAAAAATGGAACTCTAGTGCTTGTCACGGGGAACATTGCTGTGATGTTTTCCTTGTGCAGAACACACTGTAGATGTTCAGACATCGTATCACCTTTTTCATTCGTCATTAGATTGAACATCCTTTGGGTTGATTAATTAAGTAATATTTTGCTTTATAAAAGTGTAG

Ace file of the UniGene sp_v3.0_unigene6103

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative glycosyl transferase [Oryza sativa Japonica Group] gb\|AAO13481.1\| Putative glycosyl transferase [Oryza sativa Japonica Group]	-	-	0.0	72%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	62%
Sma3	Putative glycosyl transferase	-	-	4.601e-11	-

Source	Gene names
Sma3	At1g16570; CHLREDRAFT_108570; F19K19.11; GSVIVT00014968001; GTR16; LOC_Os03g08300; MICPUN_68238; OSJNBa0050H14.21; OSJNBb0076N15.7; OSTLU_18368; Os03g0180700; Os06g0564800; OsI_10261; OsI_23401; OsJ_09655; OsJ_21725; PHATRDRAFT_14002; PHYPADRAFT_50684; PO

Source	GOs	Term	Type	e value	Identity
Sma3	transferase activity	GO:0016740	Molecular Function	0.0	-
Sma3	biosynthetic process	GO:0009058	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 1	IPR001296	-	0.0	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G16570.2	-	54%
RefSeq	Arabidopsis thaliana	NP_173105.1	beta-1,4-mannosyltransferase [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002330745.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: I1MJ83

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is longer than subject: 532 - 481

Fln protein: MKMEKRGRAAVVVLGDLGRSPRMQYHALSFARQACFEVDIVAYAGTEPHAAVLEHPSIHLHLMRQPIPPGLPRFLYLLALPFKTIIQFAILLWFICVKIPSPDFFLVQNPPSVPTLIAVRWACWIRKSAFLIDWHNFGYTLLGLTLGKLHPLVKIYYWCEKRYGKMADGCLCVTKAMQHELAQNWGIKKATVVYDRSPEFFHPTQLKEKHELFCRLNKDIANPLGIHDCCSDGDIDQGMQIVSVTEDATSLATRTDGAGASCSRAADCDVTCDAWNKQGMITTPERVEYTLFTNRVVARDNQGHKDDESISLNENRPALIVSSTSWTPDEDFSILLEAAIMYDRRVAAILNEFDSISEESLWKDFTKGKQFSFPRLLFIITGKGPEREKYEEKIRKLHLKRVAFRTMWLSAANYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIKELVNVDENGLLFASSSELADQLLELFKGFPSSCDLLSSLRRGALATGSAAKWASEWEEHVMPLVTEVMNRRL*

Protein Length: 533

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATGCCCGTTTTTGTTTTAAAAAAGGGACTTCACGAACCTAATTACTCAAATTTATTCGTGCGAATTCTGAATCGTGGAACCGAAGATTTCTGGGCAAACATATACCACTGTACCCTAAGAAAAAACGCGGGTAGAAGATTATTCAACCATGAACTAGTTGCTGTGCAAACTG_-_ATGAAAATGGAAAAGAGGGGCAGAGCAGCAGTAGTGGTGCTTGGTGACTTAGGACGTAGTCCTCGTATGCAATATCATGCTCTTTCTTTTGCGCGGCAGGCTTGCTTTGAGGTTGATATTGTTGCATATGCAGGAACGGAACCTCATGCTGCTGTTTTGGAACATCCATCTATTCATCTTCATTTGATGCGACAACCTATTCCACCTGGCCTGCCACGATTTCTCTATCTTTTAGCACTTCCTTTTAAGACAATAATTCAATTTGCCATTCTACTTTGGTTCATTTGCGTTAAGATACCATCACCAGATTTTTTCCTCGTACAGAATCCTCCTTCCGTCCCAACTTTGATTGCTGTAAGATGGGCATGCTGGATAAGAAAGTCTGCTTTCCTCATTGATTGGCACAACTTTGGTTATACTCTTCTGGGCTTGACTCTTGGGAAATTACATCCACTTGTGAAAATATACTACTGGTGTGAGAAGCGTTATGGAAAAATGGCTGATGGATGCTTGTGTGTTACAAAAGCCATGCAGCACGAATTAGCTCAGAACTGGGGCATAAAAAAAGCAACTGTTGTATATGACCGATCTCCAGAATTTTTCCATCCTACACAACTAAAGGAGAAGCATGAGTTATTTTGCAGATTGAACAAGGATATTGCAAATCCACTTGGCATCCACGATTGTTGCAGTGATGGTGACATAGATCAAGGAATGCAGATTGTTTCAGTAACAGAAGATGCAACAAGTCTAGCCACCAGGACTGATGGTGCTGGTGCTTCATGTTCCAGAGCAGCAGATTGTGATGTCACTTGTGATGCATGGAATAAACAAGGGATGATAACAACTCCAGAGAGGGTGGAGTACACCCTATTTACTAATCGTGTGGTTGCAAGAGACAATCAAGGTCACAAGGATGATGAAAGCATCTCATTGAATGAAAACAGACCAGCACTTATTGTGAGCAGTACTAGCTGGACTCCGGATGAAGATTTCAGCATTCTTTTGGAGGCAGCAATTATGTATGATAGGCGTGTAGCTGCAATTTTAAATGAATTTGATTCTATATCAGAGGAAAGTCTTTGGAAGGATTTCACCAAGGGGAAGCAGTTTTCATTTCCAAGATTGCTGTTTATTATTACAGGAAAGGGTCCAGAAAGAGAAAAATATGAGGAGAAAATAAGGAAGTTGCATCTCAAACGTGTAGCATTTCGTACAATGTGGTTATCTGCTGCCAATTATCCTTTATTGCTTGGATCAGCTGATCTAGGTGTTTGTCTGCATACATCTTCATCTGGATTAGATCTCCCTATGAAGGTTGTAGATATGTTTGGATGTGGGTTACCAGTGTGTGCTGTTTCATATTCATGCATAAAGGAGCTCGTCAACGTTGATGAAAATGGGCTTTTATTCGCTTCCTCTTCAGAGCTGGCTGATCAGCTATTGGAATTATTTAAGGGGTTTCCAAGCTCATGTGATTTACTGAGTTCGCTAAGAAGAGGGGCTCTTGCAACTGGATCAGCTGCAAAATGGGCCAGTGAGTGGGAAGAGCATGTCATGCCTCTTGTAACAGAGGTCATGAATAGAAGACTGTGATCAAGATTCTTACTTTATAAAGACCAAAGGTGGCGAAAGCTCTGTGGAACCTCGGGTTTGACAGGACCGTTTAAAGTGAACACGGTAATATTTACTGTGAGAAGTCTGTAACACTGCATACCATTATATTTACTCTTTTAAGCCTTTGCCACACCCCTTACTTTGAACACTACCATTTTCTTGTTTAGAAGCAGAGAGTTGTAGCTTACAAAAATTCAGCTTGGAAAGATTGCTGAAAGAACATTTAGTGTGATTGGTCGACTGATGCGTACAATTTTCTGAACAATTTTGTGTAATGAAAATTCCATAATGGGAAAAATGGAACTCTAGTGCTTGTCACGGGGAACATTGCTGTGATGTTTTCCTTGTGCAGAACACACTGTAGATGTTCAGACATCGTATCACCTTTTTCATTCGTCATTAGATTGAACATCCTTTGGGTTGATTAATTAAGTAATATTTTGCTTTATAAAAGTGTAG

Fln Alignment:

Contig6103___KRGRAAVVVLGDLGRSPRMQYHALSFARQACFEVDIVAYAGTEPHAAVLEHPSIHLHLMRQPIPPGLPRFLYLLALPFKTIIQFAILLWFICVKIPSPDFFLVQNPPSVPTLIAVRWACWIRKSAFLIDWHNFGYXXXXXXXXXXHPLVKIYYWCEKRYGKMADGCLCVTKAMQHELAQNWGIKKATVVYDRSPEFFHPTQLKEKHELFCRLNKDIANPLGIHDCCSDGDIDQGMQIVSVTEDATSLATRTDGAGASCSRAADCDVTCDAWNKQGMITTPERVEYTLFTNRVVARDNQGHKDDESISLNENRPALIVSSTSWTPDEDFSILLEAAIMYDRRVAAILNEFDSISEESLWKDFTKGKQFSFPRLLFIITGKGPEREKYEEKIRKLHLKRVAFRTMWLSAANYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIKELVNVDENGLLFASSSELADQLLELFKGFPSSCDLLSSLRRGALATGSAAKWASEWEEHVMPLVTEVMNR
I1MJ83______________RRGRACVVVLGDIGRSPRMQYHALSLANQASLEVDIVAYGGSEPHTALLANPSIHIYIMWLTASQSLPKILRPIMLLLKPLVQFCMLLWFLCVKIPSPDIFIVQNPPSVPTLVAVKWASWLRNSSFVIDWHNFGYTLLALSLGRNSHFVSLYKWFEKHYGKMADASLCVTKAMQHELAQNWGIN-ATVLYDQPPDIFHPASLEERHKLFCRLNEDLFRSLGVRDCVSNGN---------------SLV-------ASCHQ-----------------------NETLFATEV----------GSNIYLKPNRPALVVSSTSWTPDEDFGILLEAAVMYDRRVAAILGEDDSVDEEVIWKEISDGKQCLYPRLLFIITGKGPEKEKYEVKIKRMKLKRVAFRTMWLSADDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIRELVRVDKNGLLFSSSSELADELLLLFKGFPDDCDALKVLKYGALETGSSSRWATEWEEHAKPLITEVISR

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1855	52		47		1.0
1856	55		45		1.0
1857	45	55			1.0
1903		38		61	1.0
1904	38		61		1.0
1934		71		28	1.0
1968		11		88	0.923564
1991	14			85	0.993533
2004	85	14			0.993533
2033		83		16	0.994512
2047			42	57	1.0
2050		42		57	1.0
2124		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain