SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6074

Length: 2165 nt

UniGene Fasta

>sp_v3.0_unigene6074
CGGGATGCCTCTCTACTGCAAGAATTCATTCAAAGCTCTCCGAGTCTCAAACGTTCGGATCATCCACACAGGGGCCAACAATGTGGCCGAGGACGATCACCAAGCCCGGCATTAATGGCGGAGACGATGCAGAGGAGGGGCCAAGAATTGGCCCAGGGCTGAGAAAGAAAGGGATGGGTGTGAGGGCGTGGTTGCTGCTGGACGCCTCGGGGCAGGCGCAGGTCGTGGAGGCTGGGAAACATGCGATTATGCGGCGCACGGGCCTCCCGGCTCGGGACCTTCGCATTCTAGACCCTCTGCTGTCTTATCCTTTCACCATACTTGGCCGAGAGCGAGCCATTGTGATCAATTTGGAGCACATCAAGGCAATCATCACTGCCCAGGAGGTCCTTTTGCTCAATTCAAGAGATCCTGCTGTGGTTCCCTTCATTAACGACCTCCAGCGTAGACTTCATGTGCCCGTCCAACAGGAAGGTCAAAATAGTGATACCGATCCAGATGTTGGCAATAAGGATATTGTAAGAACAACTCCATCTGGCACGATGCCAACTTTATCAAGTTCTGTGAACAAGGGAGAACTTCAACAGCTTAAAAATTTACATGAAAATGTCTTTCTAGAGAAACATGATACATGGATAGATGGTTCAAAGCCAGATACAAATGCCTATGAAAATGGTCCAAAAGTTCTGCCGTTTGAATTTAGAGCATTGGAAGCTTGCCTTGAAGCTGCATGTAGCTGCTTAGAATCTGAGACTGCTGTTCTAGAGGAAGAGGCATATCCAGCACTGGATGAGTTGACATCGAAAATCAGTACTCTCAATCTCGAAAGAGTTAGACAGATCAAAAGTCGTTTGGTTGCAATATCTGGTCGTGTTCAAAAGGTAAGAGATGAACTAGAGCACTTACTTGATGATGACGAAGATATGGCTGAGATGTATTTAACTGATAAGCTGAGGCAGCATTATCTGGATGGAAATGCCTCACCCTCTTCCTTTTATGGGGGAAGAGATGGAGTGGAGTATGAACCAACTCAGTCTGATGCAGAGGAGGAAAGATCACTGCCTGAGAGACATACTGATCCACAAAATCTACTAAGCTCTTCTGGTAACCCTGTTGAAGGTCCGTTAGTTGAAACTAAAGCATCAAGTAGAAATGAGTACAGCAGCGCTTGTAGCAGCAGCCACAGTGGTACTAAGTCTCTTGATGTGGAGGAACTGGAGATGCTTTTAGAGGCTTACTTTGTCCAGATTGATAGTACACTTAACAAGTTATCAGCTCTGAGAGAGTATGTTGACGATACAGAGGATTACATCAATATCATGCTTGATGACAAACAAAATCATCTTCTCCAGATGGGTGTCATGTTAACCACTGCGACTCTTGTCATCAGTGCATTTGTTGTCGTAGCAGGGGTATTTGGCATGAACATCACTATTGATTTATTTGATAAAGAGCGTGCCGGCCTTCCTGAATTTTTGTGGACTGTTGGTGGGTGTGCGACAGGTAGTATATTTCTCTACATTGTAGCAATTGCATGGTGTAAACATAGGCGATTACTTGAGTGAGCCAGTGCTTATTTTGCAACAGGTTATTCTTCCAAGACAATCTAATTACTTTTTCTGAATGCTAAGCTCATTTTTCAGATTTTCTTTTTTCTAGTATTATTATGTAGTAATTGTTCATTAAACAATATCCAACTAATAGTTGAATTTCATTTGAGAGATCAAGAAGTAAAGTCCTTGAATTATTGCTCCATCCTGGGAGTTACGTTTGAAGACATGACTATCAAATATTGATGTTATTTTGAATTGTTTTGAGAGTGAATTCTTTTTATTACAATCATAAATCTATTATTGAAAAGAACAGTCGAAAAGTTGAAGGATGTAGTGCTATTGTTGCTTACACAGAATTCCTGTGTCAGCTTTTTGAACTGAATTTACTCCTGTACCAAATTGGTCAATAGCTTATGGCTGGTATTCTGATACGATGAATAAAAAATGTTTATATCTAGATTTTGGGTTTTGATCCATGGATGTTTTCAACCTTTAAGATTATGATTCGCTATTAGAATTCTTTCTAATGCAAATTATTGCAACTATTGTTCTACCCTAGTTTCTACAACTATCTCTGTTGCCCATTTTGAATAAAATTTACTTCTTTACTTC

Ace file of the UniGene sp_v3.0_unigene6074

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA splicing protein mrs2, mitochondrial, putative n=1 Tax=Ricinus communis RepID=B9S827_RICCO	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G19640.1	MGT4, MRS2-3 magnesium transporter 4 chr3:6820969-6823104 FORWARD LENGTH=484	58%
RefSeq	Arabidopsis thaliana	NP_188598.2	magnesium transporter MRS2-3 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002313918.1	magnesium transporter, partial [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQP2

Fln msg:

Fln protein: MWPRTITKPGINGGDDAEEGPRIGPGLRKKGMGVRAWLLLDASGQAQVVEAGKHAIMRRTGLPARDLRILDPLLSYPFTILGRERAIVINLEHIKAIITAQEVLLLNSRDPAVVPFINDLQRRLHVPVQQEGQNSDTDPDVGNKDIVRTTPSGTMPTLSSSVNKGELQQLKNLHENVFLEKHDTWIDGSKPDTNAYENGPKVLPFEFRALEACLEAACSCLESETAVLEEEAYPALDELTSKISTLNLERVRQIKSRLVAISGRVQKVRDELEHLLDDDEDMAEMYLTDKLRQHYLDGNASPSSFYGGRDGVEYEPTQSDAEEERSLPERHTDPQNLLSSSGNPVEGPLVETKASSRNEYSSACSSSHSGTKSLDVEELEMLLEAYFVQIDSTLNKLSALREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVISAFVVVAGVFGMNITIDLFDKERAGLPEFLWTVGGCATGSIFLYIVAIAWCKHRRLLE*

Protein Length: 496

Fln nts: CGGGATGCCTCTCTACTGCAAGAATTCATTCAAAGCTCTCCGAGTCTCAAACGTTCGGATCATCCACACAGGGGCCAACA_-_ATGTGGCCGAGGACGATCACCAAGCCCGGCATTAATGGCGGAGACGATGCAGAGGAGGGGCCAAGAATTGGCCCAGGGCTGAGAAAGAAAGGGATGGGTGTGAGGGCGTGGTTGCTGCTGGACGCCTCGGGGCAGGCGCAGGTCGTGGAGGCTGGGAAACATGCGATTATGCGGCGCACGGGCCTCCCGGCTCGGGACCTTCGCATTCTAGACCCTCTGCTGTCTTATCCTTTCACCATACTTGGCCGAGAGCGAGCCATTGTGATCAATTTGGAGCACATCAAGGCAATCATCACTGCCCAGGAGGTCCTTTTGCTCAATTCAAGAGATCCTGCTGTGGTTCCCTTCATTAACGACCTCCAGCGTAGACTTCATGTGCCCGTCCAACAGGAAGGTCAAAATAGTGATACCGATCCAGATGTTGGCAATAAGGATATTGTAAGAACAACTCCATCTGGCACGATGCCAACTTTATCAAGTTCTGTGAACAAGGGAGAACTTCAACAGCTTAAAAATTTACATGAAAATGTCTTTCTAGAGAAACATGATACATGGATAGATGGTTCAAAGCCAGATACAAATGCCTATGAAAATGGTCCAAAAGTTCTGCCGTTTGAATTTAGAGCATTGGAAGCTTGCCTTGAAGCTGCATGTAGCTGCTTAGAATCTGAGACTGCTGTTCTAGAGGAAGAGGCATATCCAGCACTGGATGAGTTGACATCGAAAATCAGTACTCTCAATCTCGAAAGAGTTAGACAGATCAAAAGTCGTTTGGTTGCAATATCTGGTCGTGTTCAAAAGGTAAGAGATGAACTAGAGCACTTACTTGATGATGACGAAGATATGGCTGAGATGTATTTAACTGATAAGCTGAGGCAGCATTATCTGGATGGAAATGCCTCACCCTCTTCCTTTTATGGGGGAAGAGATGGAGTGGAGTATGAACCAACTCAGTCTGATGCAGAGGAGGAAAGATCACTGCCTGAGAGACATACTGATCCACAAAATCTACTAAGCTCTTCTGGTAACCCTGTTGAAGGTCCGTTAGTTGAAACTAAAGCATCAAGTAGAAATGAGTACAGCAGCGCTTGTAGCAGCAGCCACAGTGGTACTAAGTCTCTTGATGTGGAGGAACTGGAGATGCTTTTAGAGGCTTACTTTGTCCAGATTGATAGTACACTTAACAAGTTATCAGCTCTGAGAGAGTATGTTGACGATACAGAGGATTACATCAATATCATGCTTGATGACAAACAAAATCATCTTCTCCAGATGGGTGTCATGTTAACCACTGCGACTCTTGTCATCAGTGCATTTGTTGTCGTAGCAGGGGTATTTGGCATGAACATCACTATTGATTTATTTGATAAAGAGCGTGCCGGCCTTCCTGAATTTTTGTGGACTGTTGGTGGGTGTGCGACAGGTAGTATATTTCTCTACATTGTAGCAATTGCATGGTGTAAACATAGGCGATTACTTGAGTGA___GCCAGTGCTTATTTTGCAACAGGTTATTCTTCCAAGACAATCTAATTACTTTTTCTGAATGCTAAGCTCATTTTTCAGATTTTCTTTTTTCTAGTATTATTATGTAGTAATTGTTCATTAAACAATATCCAACTAATAGTTGAATTTCATTTGAGAGATCAAGAAGTAAAGTCCTTGAATTATTGCTCCATCCTGGGAGTTACGTTTGAAGACATGACTATCAAATATTGATGTTATTTTGAATTGTTTTGAGAGTGAATTCTTTTTATTACAATCATAAATCTATTATTGAAAAGAACAGTCGAAAAGTTGAAGGATGTAGTGCTATTGTTGCTTACACAGAATTCCTGTGTCAGCTTTTTGAACTGAATTTACTCCTGTACCAAATTGGTCAATAGCTTATGGCTGGTATTCTGATACGATGAATAAAAAATGTTTATATCTAGATTTTGGGTTTTGATCCATGGATGTTTTCAACCTTTAAGATTATGATTCGCTATTAGAATTCTTTCTAATGCAAATTATTGCAACTATTGTTCTACCCTAGTTTCTACAACTATCTCTGTTGCCCATTTTGAATAAAATTTACTTCTTTACTTC

Fln Alignment:

Contig6074___MWPRTITKPGINGGDDAEEGPRIGPGLRKKGMGVRAWLLLDASGQAQVVEAGKHAIMRRTGLPARDLRILDPLLSYPFTILGRERAIVINLEHIKAIITAQEVLLLNSRDPAVVPFINDLQRRLHVPVQQEGQNSDTDPDVGNKDIVRTTPSGTMPTLSSSVNKGELQQLKNLHENVFLEKHDTWIDGSKPDTNAYENGPKVLPFEFRXXXXXXXXXXXXXXXXTAVLEEEAYPALDELTSKISTLNLERVRQIKSRLVAISGRVQKVRXXXXXXXXXXXXMAEMYLTDKLRQHYLDGNASPSSFYGGRDGVEYEPTQSDAEEERSLPERHTDPQNLLSSSGNPVEGPLVETKASSRNEYSSACSSSHSGTKSLDVEELEMLLEAYFVQIDSTLNKLSALREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVISAFVVVAGVFGMNITIDLFDKERAGLPEFLWTVGGCATGSIFLYIVAIAWCKHRRLLE
B8LQP2______________MWPRTVTKTATNGGDDAEEGPRIGAGLRKKGMGVRAWLLLDASGQAQVVEAGKHAIMRRTGLPARDLRILDPLLSYPFTILGRERAIVINLEHIKAIITAQEVLLLNSRDPAVVPFIADLQRRLNVPTQQEGRNSDTDADVANKDILRTSPSGMMPTLSSSMNNGELQQLKKFRENVFLEKPDTWGDGSKPDMNAYENGPKVLPFEFRALEACLEAACSCLESETTILEEEAYPALDELTSKISTLNLERVRQIKSRLVAISGRVQKVRDELEHLLDDDEDMAEMYLTDKLRQHYLDGNASPSSFYGGRDGMEYEPTQSDAEEERSLLERHTDPQNLLSSSGNHVEGPLAATKAPSRNEYSSSSSGSHSGTKSLDVEELEMLLEAYFVQIDSTLNKLSALREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVISAFVVVAGIFGMNITIDLFDEDRAGLPEFLWTVGGCATGSIFLYIVAIAWCKHRRLLE

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1757		77	22		0.999999
1789	88			11	0.923564
1790	88			11	0.923564
1841		85		14	0.993533
1887	22		77		0.999999
2035	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain