SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6072

Length: 2956 nt

UniGene Fasta

>sp_v3.0_unigene6072
CTGGATCAAGATACATAACTAGTGGCCTATCCCTTTGTGCTAGCTACCTCAGCTGCTGGGTCTTATATAATTCATTCATGCAGAATGACATATCTCGAATGACGTAATTACGTATATAATGAATGACTGGAATCACTGGTCGAAATGAACCAATTAGTTCGAGATCTCGATTGCATAATGACATATATAAGAGATGCATTATCTGCTAAAGCGTAATTACTGCTATAATTCGGAATGACATATCTCATTCATGATTGGATCATTCATTACGTATTGAAACTTGCATCCCAGCCACGTATGGTCAAGGAGCATGCTTCCTTGACCATGCTTGAGAGACAATCTTTTCTTTATACCGAGAGGGGGCGGAAGGGACAAGTCTCTCGATTTCAGGAGCAAAAGGTCGAAGATAACGAAATAATGAATCAAATGATTATGACAAAATGGCTATTCATCACAATCGCTTCTTGTGATGCTGCGGAACCATGGCAATTAGGATTTCAAGACGCAGCAACGCCTGTGATGCAAGGAATAATTGACTTACATCATGATATCTTTTTCTTCCTCATTCTGATTTTGGTTTTCGTCTTATGGATGTTGGTTCGCGCTTTATGGCATTTTCACTATAGAAGAAATCCAATCCCGCAAAGGATTGTTCATGGAACTACTATAGAGATTATTTGGACCATATTTCCTAGTATTATTCTTATGTTCATTGCTATACCATCATTTGCCCTGTTATACTCGATGGACGAGGTAGTGGTCAATCCAGTCATTACTATCAAAGCTATCGGACATCAATGGTATTGGACTTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTAACTTTTGACAGTTATATGATTCCAGAGGATGATTTAGAATTGGGTCAATTACGTTTATTAGAAGTGGACAATCGAGTGGTTGTACCGGCCAAAACTCCTCTACGTATGATTGTAACATCTGCTGATGTACTTCATAGTTGGGCTGTACCTTCCTTAGGTGTCAAATGTGATGCTGTACCCGGTCGTTTGAATCAGACTTCCATTTTGGTGCAACGAGAAGGAGTTTGCTACGGTCAGTGCAGTGAGATTTGTGGAACCAATCATGCCTTTATGCCTATCGCCGTAGAAGCTGTTTCTTTGAAAGATTATGTTTCTTGGGTATCCAATAAATTCATCTAAAGGCCCCCCCGAATAAGAAGGCCCCCACTTCTCTATTTCCTACCCTAAAAGCCTGAGCTAGATTGAGATAAAAAAGAGTATCCTGTACCTTATAGAAGGTAAGGTTCCCTTTCTTTATTCCCCTAAAAGAGCTAGAAGGTAAGGTAAGGAACGTAGTCGCTTGTCCGCACCGGGCAAGGTAATTGATTGCTTGTCCGCACCGGGCAAGGTAATTGATTGCTTGTCCGCACCGGGCAAGGTCCGGCAGGGCTTGCTTGACGTTAGGAAAGCAAGGAGAACCTGACCTGAGCGAAAGGGAGAACCTTCTTCACTTTCTTTAAGGAGTATGGGTGGAGAAATGCGGGTCGCTGCTGGGAGGTCCAACCCTAAGCTTATCTCTGCGACCATAATGAATAGAATATCTAATGGATTTTCTCTTCCGTTCAGTTGCTAAAAGAGTCATGATGACGTTGACAAATGATATTGAGTTCCACGAATACGAAGGAGGGAAATATGCTATTTGCTGCTATTCTATTCATTTGTGTCTTAAGTTCGAAGGGGATCTTAATATGTAATGAAGAAACGATAGTAGCTTGTTGTTTTATAGGCTTTCTCATATTTATTCAGAGGAGTTTTGGTAATACTTTCAAAGCGATTTTCGACGGGAGAATCGGAGCTATTCAGAGGGAATTGCAGCAATTCCTCAATCCTAACGAAGTGGTTTTTCTGGAATCCAATGAACAACAGCAATTACTTAGGATCAGCTTGCGTTCAATTACGCCGGAAATTGTCGAATTATTACTGAATGAGATGGCACGCTGTGCGCCTAAGTGCGAAAGGACAGTGCAAGCTGTGTTATGCCGAAACCTAAATGTGGAGTTAGCAACACTTCTAAATGCCATTTCTTCCCGTCGCATCCGTCTTCGGGACGATATAGTCACAGGGTTTCACTTCTCAGTGAGTGATCAATTTGTCCCCTGCACCACCGATACGAAAAAAGCTTTTCTCGTAGAACTGATCCGAGAAGGCTTGGTGGTATTAAGATGGTATTAAGAATGGTTTCTCGAAATGGAGGGCGACCCGACCTAAGAACGAACGGAAAGGTTCAATTGACTTATTGGGTGCCCCTCTCAAATAAGTAACTAGCTTTTGGTCGAGCCTGCTGGCGCATCCTCTCGATGGCGGCCTTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGGGGGGGGTTAACAGTCGAGCCTGCTTTCGCATCCTTATGGTCGAGCACCTAAAGGTCCTTAGGCGGCCCTCACCCATATGATGGGTGAGCGAGAAATCGATGGCGGCGATGGCGATGGTCGAGCAAGCAAGAAATTGATTTGACTTATTGGGTGGCCCCTCTCAAATAAGTAACTAAAAGCCTGCTTACGCATCCTTTCATTTTGATCCAATCAATCAATTAGGTAGGGAATTCGGGAGAGATCTCAATTCGGGATCTTGCGAAGAAAATGACTCTTAAAATGAAAGCCCATTCCTGGGCCTATTGCCCCCCGGGTTTGATCTCTTCTTCATTTAGGTAGGGCCGGCGCCCCTTACGCTTTGCTCAGGTAAGGGAGAACACTTCCTAATCATTGCCTCCCTGCGCCTCTATGCATGCGAGTCTTACTGGCACTATACTCCTTATTCACCCGGCCACCTCTATACAGAACTGGCCCTGGCTTGCTTTATTCAAGCGAACTGCCCCGAAACCTTACCTGAGCATAGCGAAGGAAGGAAAGAAGGTAAGGGCAAGTTCCGG

Ace file of the UniGene sp_v3.0_unigene6072

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome c oxidase subunit 2 n=20 Tax=core eudicotyledons RepID=COX2_ARATH	-	-	82%
FL-Next	sp=Cytochrome c oxidase subunit 2; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	90%
Sma3	Cytochrome c oxidase subunit 2	-	-	-

Source	Gene names
Sma3	cox2;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	mitochondrial respiratory chain	GO:0005746	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	cytochrome-c oxidase activity	GO:0004129	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	respiratory electron transport chain	GO:0022904	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Copper centre Cu(A)	IPR001505	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Cytochrome C oxidase subunit II, transmembrane domain	IPR011759	-	-
Sma3	Cytochrome c oxidase, subunit II	IPR014222	-	-
Sma3	Cytochrome c oxidase subunit II C-terminal	IPR002429	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	ATMG00160.1	COX2 cytochrome oxidase 2 chrM:40502-42628 REVERSE LENGTH=260	86%
RefSeq	Arabidopsis thaliana	NP_085487.1	cytochrome c oxidase subunit 2 (mitochondrion) [Arabidopsis thaliana]	86%
RefSeq	Populus trichocarpa	XP_002332900.1	predicted protein, partial [Populus trichocarpa]	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P93285

Fln msg: your sequence is longer than subject: 319 - 260

Fln protein: MTYLIHDWIIHYVLKLASQPRMVKEHASLTMLERQSFLYTERGRKGQVSRFQEQKVEDNEIMNQMIMTKWLFITIASCDAAEPWQLGFQDAATPVMQGIIDLHHDIFFFLILILVFVLWMLVRALWHFHYRRNPIPQRIVHGTTIEIIWTIFPSIILMFIAIPSFALLYSMDEVVVNPVITIKAIGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTPLRMIVTSADVLHSWAVPSLGVKCDAVPGRLNQTSILVQREGVCYGQCSEICGTNHAFMPIAVEAVSLKDYVSWVSNKFI*

Protein Length: 320

Fln nts: CTGGATCAAGATACATAACTAGTGGCCTATCCCTTTGTGCTAGCTACCTCAGCTGCTGGGTCTTATATAATTCATTCATGCAGAATGACATATCTCGAATGACGTAATTACGTATATAATGAATGACTGGAATCACTGGTCGAAATGAACCAATTAGTTCGAGATCTCGATTGCATAATGACATATATAAGAGATGCATTATCTGCTAAAGCGTAATTACTGCTATAATTCGGA_-_ATGACATATCTCATTCATGATTGGATCATTCATTACGTATTGAAACTTGCATCCCAGCCACGTATGGTCAAGGAGCATGCTTCCTTGACCATGCTTGAGAGACAATCTTTTCTTTATACCGAGAGGGGGCGGAAGGGACAAGTCTCTCGATTTCAGGAGCAAAAGGTCGAAGATAACGAAATAATGAATCAAATGATTATGACAAAATGGCTATTCATCACAATCGCTTCTTGTGATGCTGCGGAACCATGGCAATTAGGATTTCAAGACGCAGCAACGCCTGTGATGCAAGGAATAATTGACTTACATCATGATATCTTTTTCTTCCTCATTCTGATTTTGGTTTTCGTCTTATGGATGTTGGTTCGCGCTTTATGGCATTTTCACTATAGAAGAAATCCAATCCCGCAAAGGATTGTTCATGGAACTACTATAGAGATTATTTGGACCATATTTCCTAGTATTATTCTTATGTTCATTGCTATACCATCATTTGCCCTGTTATACTCGATGGACGAGGTAGTGGTCAATCCAGTCATTACTATCAAAGCTATCGGACATCAATGGTATTGGACTTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTAACTTTTGACAGTTATATGATTCCAGAGGATGATTTAGAATTGGGTCAATTACGTTTATTAGAAGTGGACAATCGAGTGGTTGTACCGGCCAAAACTCCTCTACGTATGATTGTAACATCTGCTGATGTACTTCATAGTTGGGCTGTACCTTCCTTAGGTGTCAAATGTGATGCTGTACCCGGTCGTTTGAATCAGACTTCCATTTTGGTGCAACGAGAAGGAGTTTGCTACGGTCAGTGCAGTGAGATTTGTGGAACCAATCATGCCTTTATGCCTATCGCCGTAGAAGCTGTTTCTTTGAAAGATTATGTTTCTTGGGTATCCAATAAATTCATCTAA___AGGCCCCCCCGAATAAGAAGGCCCCCACTTCTCTATTTCCTACCCTAAAAGCCTGAGCTAGATTGAGATAAAAAAGAGTATCCTGTACCTTATAGAAGGTAAGGTTCCCTTTCTTTATTCCCCTAAAAGAGCTAGAAGGTAAGGTAAGGAACGTAGTCGCTTGTCCGCACCGGGCAAGGTAATTGATTGCTTGTCCGCACCGGGCAAGGTAATTGATTGCTTGTCCGCACCGGGCAAGGTCCGGCAGGGCTTGCTTGACGTTAGGAAAGCAAGGAGAACCTGACCTGAGCGAAAGGGAGAACCTTCTTCACTTTCTTTAAGGAGTATGGGTGGAGAAATGCGGGTCGCTGCTGGGAGGTCCAACCCTAAGCTTATCTCTGCGACCATAATGAATAGAATATCTAATGGATTTTCTCTTCCGTTCAGTTGCTAAAAGAGTCATGATGACGTTGACAAATGATATTGAGTTCCACGAATACGAAGGAGGGAAATATGCTATTTGCTGCTATTCTATTCATTTGTGTCTTAAGTTCGAAGGGGATCTTAATATGTAATGAAGAAACGATAGTAGCTTGTTGTTTTATAGGCTTTCTCATATTTATTCAGAGGAGTTTTGGTAATACTTTCAAAGCGATTTTCGACGGGAGAATCGGAGCTATTCAGAGGGAATTGCAGCAATTCCTCAATCCTAACGAAGTGGTTTTTCTGGAATCCAATGAACAACAGCAATTACTTAGGATCAGCTTGCGTTCAATTACGCCGGAAATTGTCGAATTATTACTGAATGAGATGGCACGCTGTGCGCCTAAGTGCGAAAGGACAGTGCAAGCTGTGTTATGCCGAAACCTAAATGTGGAGTTAGCAACACTTCTAAATGCCATTTCTTCCCGTCGCATCCGTCTTCGGGACGATATAGTCACAGGGTTTCACTTCTCAGTGAGTGATCAATTTGTCCCCTGCACCACCGATACGAAAAAAGCTTTTCTCGTAGAACTGATCCGAGAAGGCTTGGTGGTATTAAGATGGTATTAAGAATGGTTTCTCGAAATGGAGGGCGACCCGACCTAAGAACGAACGGAAAGGTTCAATTGACTTATTGGGTGCCCCTCTCAAATAAGTAACTAGCTTTTGGTCGAGCCTGCTGGCGCATCCTCTCGATGGCGGCCTTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGGGGGGGGTTAACAGTCGAGCCTGCTTTCGCATCCTTATGGTCGAGCACCTAAAGGTCCTTAGGCGGCCCTCACCCATATGATGGGTGAGCGAGAAATCGATGGCGGCGATGGCGATGGTCGAGCAAGCAAGAAATTGATTTGACTTATTGGGTGGCCCCTCTCAAATAAGTAACTAAAAGCCTGCTTACGCATCCTTTCATTTTGATCCAATCAATCAATTAGGTAGGGAATTCGGGAGAGATCTCAATTCGGGATCTTGCGAAGAAAATGACTCTTAAAATGAAAGCCCATTCCTGGGCCTATTGCCCCCCGGGTTTGATCTCTTCTTCATTTAGGTAGGGCCGGCGCCCCTTACGCTTTGCTCAGGTAAGGGAGAACACTTCCTAATCATTGCCTCCCTGCGCCTCTATGCATGCGAGTCTTACTGGCACTATACTCCTTATTCACCCGGCCACCTCTATACAGAACTGGCCCTGGCTTGCTTTATTCAAGCGAACTGCCCCGAAACCTTACCTGAGCATAGCGAAGGAAGGAAAGAAGGTAAGGGCAAGTTCCGG

Fln Alignment:

Contig6072___MIMTKWLFITIASCDAAEPWQLGFQDAATPVMQGXXXXXXXXXXXXXXXXXXXXWMLVRALWHFHYRRNPIPQRIVHGTTIEIIWTIFPSIILMFIAIPSFALLYSMDEVVVNPVITIKAIGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTPLRMIVTSADVLHSWAVPSLGVKCDAVPGRLNQTSILVQREGVCYGQCSEICGTNHAFMPIAVEAVSLKDYVSWVSNK
P93285______________MIVLKWLFFTISPCDAAEPWQLGFQDAATPIMQGIIDLHHDIFFFLILILVFVLWILVRALWHFHYKKNAIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEEDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFMSIVVEAVSRKDYGSWVSNQ

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
1580	88		11		0.923564
1581	88		11		0.923564
1582			11	88	0.923564
1650		10		90	0.90298
1664	90			10	0.90298
1689		22		77	0.999999
1751			85	14	0.993533
1752	85			14	0.993533
1766		16		83	0.994512
1774		20		80	0.995493
1786		80		20	0.995493
1793	80	20			0.995493
1843		66		33	1.0
1881	20	80			0.995493
1883	80			20	0.995493
1944	16	83			0.994512
1973		66		33	1.0
1974		16		83	0.994512
1990	16	83			0.994512
2017	16		83		0.994512
2028		33		66	1.0
2037	85		14		0.993533
2038		85		14	0.993533
2107	90		10		0.90298
2127		90		10	0.90298
2128	90		10		0.90298
2130			10	90	0.90298
2158		87		12	0.992554
2191	16	83			0.994512
2192	16	83			0.994512
2193		16	83		0.994512
2195			83	16	0.994512
2196	83			16	0.994512
2282		25		75	0.996473
2286		25		75	0.996473
2400			33	66	0.997452
2464	16		83		0.994512
2466	16		83		0.994512
2467			83	16	0.994512
2468		83		16	0.994512
2497	85	14			0.993533
2647		85		14	0.993533
2692	66	33			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain