SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6065

Length: 2335 nt

UniGene Fasta

>sp_v3.0_unigene6065
CGTCGTGACCTTGGCTGTCACTCAACAAGTTGTTTTGTCCTAGTGACATTGACTACCACTCATGATTTTTATTCTTGAAATGACAATCAAAGAGGAAATAGATGATGCCAATGTTACTGGGCCTGGCAACTCAATGACTGAAAAGTCCTCTGGAGAGGAGAAAGCAATTGAAAGATCCCCAGTTGGAGGCGATCCCGAAGATCAGATGAACAAGCCTGTTACTGCTGCAAAGACTCCTCAGAAGGCTATGTTCACAGGTCATAAACCTGGTGTTCAGAAGCTTTCTAATAATGTGGAGAAAGGACCAAAGGTTGCTAATAGTTCTGCCAAAGAGCTTAAAAGTCCCGTCTCAAGGGATGAGGCCTCCAAAAACATCCCACATTATCTCAGGCCATCTACCAGTTCCTGTCATGATGCATGTAAATATGGAGCGAAAGCACATTTTCATTCCTCGGATGCCTCTAAGAACACTCATACTCATGCTAGAGTTTCAAACAAGACAAGTCTGACTCCCCCAAAATCTGCAGTCCCCAAGATTTACAAGTCCCCTAAAAGCATTCAGAGTAATAATTCTCTAGATAAGTCTGCTTCTTCTTCAGTTAGTAATTCTTCCAAAATTTCTCCAAGGGGGAAGACCATTGGTAATACTGTACCGCCTCAGGTTAAAATGGTCAAGTCCACACCTGAAAAATCAAAAGATGTGCCGGCTAAATCTTCTTCAGACAGGAAACCAAAGCTATCAATTACTCCGCCAACAATATCTTCTTCAGACAGGAAACCAAAGCTTTCAATTACTCCGCCAACAATGTTGTCCAGATCTGCCAAGCCTGCTGGTAATGCTAAAATCATGACTCCACCGTCCAAGCCTTCTGGCAATGACCATGGAAATGCTAAGACAATTACTCCATCGCCCAAGCCTGCTGGCATTGCTAAAGGGACGGCTAAAGGGACGGCTAAAACAGCAATGCCACAGCCGAACAAGAAGGCGGCCTTAAAGACGAGAGAGCATCTCCTAAAGAAGACAGAGAAGAAGACAGCTAAATCTGATTCTCCAACATCAGTTAGGTCAACCACATCCTCTGTTCCACAAGAAGAAAAGCCTAATGAAGTTGGAACATTGGACGTATGTGGCAGCGGTACAGAAGAATCGGGCAATGATAATCAAATATTGGCAAATGCAGGTGAAGATGTTCAGTTTTATGAACAATCTCTGAGTGCTGGTGATTCAAGTGACAAGGAACATGAACATGTTTTGATGAAGCATAATGATTATGAAGATGACCATTCTGTTAAAGAGCATTCCAATGATGGAATTATGATTCCTATAGCTCGTGAAAGCGCGGCCTCTGATGAATATGTTGCTGAGTGGAGTGGTGATCTTGAACCATATGGGGAAAATTTTGCCATGGATTATGATGATCAAGAATTTGATGAACAGGATTCTGAATACTCTGAATATAGTGAATATTCTGAAAGTGGATCACATGATGAACAAGGAGAATCTGCCAGGGTTAGAAAAGAGCATCAAATGGTGGCTGGTGAAGAGGGTGATCAGGGTGCGGAGAAACTAAGGTTCAGAAGAGGTCAAGAGCTGCCTGTCAAAGAGGAAGATCGGGCTTTCGTGAGAAGAAGATTTAGAAGAGGAAGAAACATTGACCAATCTGTTTCAAATCCGCAGCCAGAGAACGTAGTTCTAAGGCACCAGGATGTACAAGGAAGGAAGGGATCAGAAGAGTTTATGTTGAATCATGTTATAGAAGAAACAGTGAATAAGCTGGCTCATACCAGGAAAAGCAAAGTAAAGGCTCTGGTTGGAGCTTTTGAAACTGTTATTTCACTCAAAGAGTCTGAAACTAATGAGCTGAAGCATGCTGCTACAAAAGATTTACCCCAGTTGAGCACTCTCCAAGAATGCACGTGAAGTTCAGCACTGATAGTTTTGTTTGTAGGAGCTGAATTTATTCCAATCATCCATTTCATTAAGGCGTGAGACATATGGATATAAGGACTAATAATTGAATCTGATCAATATATGGACTACAGAAGGGGAGTTGCTGCTTGAGTCTGTCGAGTCTATTGAGTTTGAAAAGTATGAGCAGCTTGACTGCAAATATGGAAATGGCTGTGTCTTGTTCTGCTATTCTGTCAAGAAGAATGCTTATAATAGTTTGTTCAACTTTGAATTTCTGTAAATATTATGTGATAAATAGTATGTTCCAGAAGTTGAACTTTCTATTTCACTGTTGCAGCATGCTTGAATTTTAATATCATAATGTCTTCATTCGGCGGACATCAAAAGGAGTGTCTGAATGCCAATCAGTCAAATGAACTTGTG

Ace file of the UniGene sp_v3.0_unigene6065

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calmodulin-binding protein-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9FLZ6_ARATH	-	-	9.0e-13	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Putative uncharacterized protein F13G24.20	-	-	3.411e-06	-

Source	Gene names
Sma3	At5g07820; F13G24.20;

Source	InterPros	Term	Type	e value	Identity
Sma3	Calmodulin-binding domain, plant	IPR012417	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G39380.1	Plant calmodulin-binding protein-related chr5:15759163-15760686 REVERSE LENGTH=507	1.0e-15	55%
RefSeq	Arabidopsis thaliana	NP_198754.1	calmodulin-binding protein-like protein [Arabidopsis thaliana]	2.0e-15	55%
RefSeq	Populus trichocarpa	XP_002306042.1	predicted protein [Populus trichocarpa]	1.0e-13	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC93

Fln msg: your sequence is longer than subject: 620 - 171

Fln protein: MIFILEMTIKEEIDDANVTGPGNSMTEKSSGEEKAIERSPVGGDPEDQMNKPVTAAKTPQKAMFTGHKPGVQKLSNNVEKGPKVANSSAKELKSPVSRDEASKNIPHYLRPSTSSCHDACKYGAKAHFHSSDASKNTHTHARVSNKTSLTPPKSAVPKIYKSPKSIQSNNSLDKSASSSVSNSSKISPRGKTIGNTVPPQVKMVKSTPEKSKDVPAKSSSDRKPKLSITPPTISSSDRKPKLSITPPTMLSRSAKPAGNAKIMTPPSKPSGNDHGNAKTITPSPKPAGIAKGTAKGTAKTAMPQPNKKAALKTREHLLKKTEKKTAKSDSPTSVRSTTSSVPQEEKPNEVGTLDVCGSGTEESGNDNQILANAGEDVQFYEQSLSAGDSSDKEHEHVLMKHNDYEDDHSVKEHSNDGIMIPIARESAASDEYVAEWSGDLEPYGENFAMDYDDQEFDEQDSEYSEYSEYSESGSHDEQGESARVRKEHQMVAGEEGDQGAEKLRFRRGQELPVKEEDRAFVRRRFRRGRNIDQSVSNPQPENVVLRHQDVQGRKGSEEFMLNHVIEETVNKLAHTRKSKVKALVGAFETVISLKESETNELKHAATKDLPQLSTLQECT*

Protein Length: 621

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACAAGTTGTTTTGTCCTAGTGACATTGACTACCACTC_-_ATGATTTTTATTCTTGAAATGACAATCAAAGAGGAAATAGATGATGCCAATGTTACTGGGCCTGGCAACTCAATGACTGAAAAGTCCTCTGGAGAGGAGAAAGCAATTGAAAGATCCCCAGTTGGAGGCGATCCCGAAGATCAGATGAACAAGCCTGTTACTGCTGCAAAGACTCCTCAGAAGGCTATGTTCACAGGTCATAAACCTGGTGTTCAGAAGCTTTCTAATAATGTGGAGAAAGGACCAAAGGTTGCTAATAGTTCTGCCAAAGAGCTTAAAAGTCCCGTCTCAAGGGATGAGGCCTCCAAAAACATCCCACATTATCTCAGGCCATCTACCAGTTCCTGTCATGATGCATGTAAATATGGAGCGAAAGCACATTTTCATTCCTCGGATGCCTCTAAGAACACTCATACTCATGCTAGAGTTTCAAACAAGACAAGTCTGACTCCCCCAAAATCTGCAGTCCCCAAGATTTACAAGTCCCCTAAAAGCATTCAGAGTAATAATTCTCTAGATAAGTCTGCTTCTTCTTCAGTTAGTAATTCTTCCAAAATTTCTCCAAGGGGGAAGACCATTGGTAATACTGTACCGCCTCAGGTTAAAATGGTCAAGTCCACACCTGAAAAATCAAAAGATGTGCCGGCTAAATCTTCTTCAGACAGGAAACCAAAGCTATCAATTACTCCGCCAACAATATCTTCTTCAGACAGGAAACCAAAGCTTTCAATTACTCCGCCAACAATGTTGTCCAGATCTGCCAAGCCTGCTGGTAATGCTAAAATCATGACTCCACCGTCCAAGCCTTCTGGCAATGACCATGGAAATGCTAAGACAATTACTCCATCGCCCAAGCCTGCTGGCATTGCTAAAGGGACGGCTAAAGGGACGGCTAAAACAGCAATGCCACAGCCGAACAAGAAGGCGGCCTTAAAGACGAGAGAGCATCTCCTAAAGAAGACAGAGAAGAAGACAGCTAAATCTGATTCTCCAACATCAGTTAGGTCAACCACATCCTCTGTTCCACAAGAAGAAAAGCCTAATGAAGTTGGAACATTGGACGTATGTGGCAGCGGTACAGAAGAATCGGGCAATGATAATCAAATATTGGCAAATGCAGGTGAAGATGTTCAGTTTTATGAACAATCTCTGAGTGCTGGTGATTCAAGTGACAAGGAACATGAACATGTTTTGATGAAGCATAATGATTATGAAGATGACCATTCTGTTAAAGAGCATTCCAATGATGGAATTATGATTCCTATAGCTCGTGAAAGCGCGGCCTCTGATGAATATGTTGCTGAGTGGAGTGGTGATCTTGAACCATATGGGGAAAATTTTGCCATGGATTATGATGATCAAGAATTTGATGAACAGGATTCTGAATACTCTGAATATAGTGAATATTCTGAAAGTGGATCACATGATGAACAAGGAGAATCTGCCAGGGTTAGAAAAGAGCATCAAATGGTGGCTGGTGAAGAGGGTGATCAGGGTGCGGAGAAACTAAGGTTCAGAAGAGGTCAAGAGCTGCCTGTCAAAGAGGAAGATCGGGCTTTCGTGAGAAGAAGATTTAGAAGAGGAAGAAACATTGACCAATCTGTTTCAAATCCGCAGCCAGAGAACGTAGTTCTAAGGCACCAGGATGTACAAGGAAGGAAGGGATCAGAAGAGTTTATGTTGAATCATGTTATAGAAGAAACAGTGAATAAGCTGGCTCATACCAGGAAAAGCAAAGTAAAGGCTCTGGTTGGAGCTTTTGAAACTGTTATTTCACTCAAAGAGTCTGAAACTAATGAGCTGAAGCATGCTGCTACAAAAGATTTACCCCAGTTGAGCACTCTCCAAGAATGCACGTGA___AGTTCAGCACTGATAGTTTTGTTTGTAGGAGCTGAATTTATTCCAATCATCCATTTCATTAAGGCGTGAGACATATGGATATAAGGACTAATAATTGAATCTGATCAATATATGGACTACAGAAGGGGAGTTGCTGCTTGAGTCTGTCGAGTCTATTGAGTTTGAAAAGTATGAGCAGCTTGACTGCAAATATGGAAATGGCTGTGTCTTGTTCTGCTATTCTGTCAAGAAGAATGCTTATAATAGTTTGTTCAACTTTGAATTTCTGTAAATATTATGTGATAAATAGTATGTTCCAGAAGTTGAACTTTCTATTTCACTGTTGCAGCATGCTTGAATTTTAATATCATAATGTCTTCATTCGGCGGACATCAAAAGGAGTGTCTGAATGCCAATCAGTCAAATGAACTTGTG

Fln Alignment:

Contig6065___QGESARVRKEHQMVAGEEGDQGAEKLRFRRGQELPVKEEDXXXXXXXXXXXXNIDQSVSNPQPENVVLRHQDVQGRKGSEEFMLNHVIEETVNKLAHTRKSKVKALVGAFETVISLKESETNELKHAATKDLPQLSTLQECT
D5AC93______________QGESARVRKERQMMIGEEGNQGAEKLRFRRGRELPIREEDRAFERRRFRRGRNIDQSDSNPQPENVVLRHQDVQGRKGSEEFMLNHVIEETVNKLAHTRKSKVKALVGAFETVISLKESETNELKHAGTKDLSQLSTLQECT

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
278	25	75			0.996473
565	20		80		0.995493
566	80			20	0.995493
720	25	75			0.996473
721	25			75	0.996473
723		75	25		0.996473
724	75			25	0.996473
1028		33	66		0.997452
1064			75	25	0.996473
1065			25	75	0.996473
1066			25	75	0.996473
1067	75		25		0.996473
1112	25		75		0.996473
1155	20		80		0.995493
1767		85		14	0.993533
1768	71		28		1.0
1770			14	85	0.993533
1833		11		88	0.999952
2273	84			15	0.999986
2275	84		15		0.999986
2285			16	83	0.999991
2289	9		72		0.999994
2290	18		9		0.999994
2292	11		88		0.923564
2329	50		25	25	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain