SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6063

Length: 2302 nt

UniGene Fasta

>sp_v3.0_unigene6063
ATGGGGAGACTCCAATTACCCAGCAGACACAACTTTCCCACGCTAAACGACTGTACGAAAACTTTTATTTACTCTTCTCATCAGACGTCGTGAGTTCGAAACCTCAGAGCATCCATAGGGTTTGTTTCCAAAGCCATGGCGGATTCAGTAGAAGAGCAGCAACAGAGAGGTAACGGGGTCGAATCCCGCGAATCGGAAATCAGTGACCTTGAAGACGATGAGAAATACCCCGAAACGAAGCGGATTGCGGCACGATCCTCCATGATCGATTCTTTCAAAACCTGTGGATTTTGTGGCCTCAGCATCGACAAGGAAGACTTGAGGAAAAGATTAATCATCCCAGAGTATCTGAGAATTGCCATGGTGGAAGCTGTGAGAAACGAAGAATTTGCTTACGACGAAGGTCGACATCGCGGGGACGGCACCAGCACTGCCCCGGAAGCTGCCATTATTGTCTTTATTAATTTGAAGAGCGGAGGACGTCGAGGCCCCACGTTTAAGGCTCGGCTTCAGGAGCTTATCAGTGAAGAGCAGGTATTTGATCTCTCAGAAGTTAAACCCTCAGATTTTCTTCGTCATGGTCTAGGTTGTTTGGAAAAACTGGCTAGCTTTGGAGATCATTGTGCTAAAGAAACCCGTGACAGAATACGCATTATCGCAGCAGGAGGTGATGGGACAGTGGGATGGATACTGGGAAGTATTGTTGAACTTCGTTTAGAAAGTCATAAGCGAATCCCACCAGTTGGAATCATTCCTCTTGGCACAGGCAATGATCTAGCTCGAAGTTTTGGTTGGGGTGGATCATTTCCCATGGCATGGAGGTCGGCAGTCAAGAGGTACTTGGACAGAGCAGTTAGTGGTCCAATTTGTCGCCTTGACAGTTGGCAGGTTATGTTGACACCGATAGCTGGACAAGAATTAAATCTACCTCCTGCTTTTAGACCACAAGAAGCTCCAACTCATCAGCTTGGTTATGGGGTTGAAGATAGTGTATCATCAAATAATTCCACTTCTTATAAAGGCACATTTTACAACTACTTCAGCATCGGTATGGATGCCCAAATAGCCTATGGGTTTCATCATTTGCGAAATGAGAAACCATATCTTGCTCGAGGTCCGGTTTCTAATAAGATAATCTATTCTGGGTATGGTTGTGCTCAAGGATGGTTTTGCACACCTTGTTCAGCAAATCCACGAGTGAGGGGAATAAACAACATTGTACAGATGCACATCAAAAAACAAAGTTGTTCTGATTGGGAGATTCTTCGTATCCCTTCAAGTGTCCGAGCAGTTGTTGCACTAAATCTTCACAATTATGCAAGTGGACGAAATCCTTGGGGCCACCCTAGGCCAGACTACTTGGAAAAGAGAGGTTTTGTTGAAGCACACCCTGATGATGGATTGCTTGAAATCTTTGGGCTAAAGGAGGGGTGGCATTCATCGTTTGTCATGATTGATCTTATATCAGCAAAGCATCTTGCTCAGGCAGCCGCTTTCAAATTAGAACTGAGGGGTGGGCGGAGGAAGCGAGCTTACTTGCAGATGGATGGTGAGCCCTGGCAGCATCCACTTAGCGAGCGCGATTCGACAATGATTGAGATAACAAGGGTTCCTTTCCAATCCCTCATGATCAGTGGAGAATGAAGAACTTTTGGATTATCTCGTATTCAGCTTCAGAGTGTCCGAGTTGGGATGACTGAGCATGTACATCTATAAATTCCACTTGTGAATATCAGTGCTACTAGTGGCTTTTGCGTATTCAAAATCTATGTGTAATCTTCCAATGAAACTCTTCCATTTTTTTGTAATTAAAGCAATTTGACATTGTTGCACCTGCCCAGTGAGCCGAGGATATGTTCACAGTACGAATAAATGTGTCGGTAAGAAATTGTAGCATGTGTTGGTAAGGAATTATTTATGCGGTAAACACTGTAATGTAGTCCTATATTTCAGTTTTGATGTCCTTTTGTCACAGTGGTTTAGGTTAATGGTATTTATATACCGATCCACCTTACCCATGTTAAACGTATAAACAATAATAGCTGGAAATATTTAAGCATGGCCTGTGTGCTTCTCCTCGTACTGCTGCTTAGAGTATAGTTAACACGTATTTATAGGGCTGCCAAGAGATTCACAGATTTGGCCTTGCAAATGTATCGAGCATTTTAGCTGTAGGCGAACTTATTTTCCTTCAAATTAAGTAATTTCAATTTACAAGGCTGCCAAGAGTTTTACAGGTTTGGCCTCGCAAACGTATGAAGCCTGTTAACTGAATAATGTTAATTTGATATGGCAATTAATT

Ace file of the UniGene sp_v3.0_unigene6063

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	diacylglycerol kinase 3 [Arabidopsis thaliana] gb\|AAL57635.1\| At2g18730/MSF3.11 [Arabidopsis thaliana] gb\|AAM98254.1\| At2g18730/MSF3.11 [Arabidopsis thaliana] gb\|AEC06799.1\| diacylglycerol kinase 3 [Arabidopsis thaliana]	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Diacylglycerol kinase	-	-	1.03e-10	-

Source	Gene names
Sma3	AT4g30340; At2g18730; At4g30340; At5g57690; DGK7; GSVIVT00011281001; GSVIVT00031471001; OSJNBa0012K14.16; OSJNBa0054K20.17; OSJNBb0003H03.38; Os02g0787800; Os08g0249600; OsI_09221; OsI_28449; OsI_28450; OsI_28452; OsI_28453; OsJ_08661; OsJ_26615; PHYPADRA

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	diacylglycerol kinase activity	GO:0004143	Molecular Function	-
Sma3	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease P	IPR000100	-	-
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Diacylglycerol kinase, plant	IPR016961	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G30340.1	ATDGK7, DGK7 diacylglycerol kinase 7 chr4:14838465-14840941 REVERSE LENGTH=492	58%
RefSeq	Arabidopsis thaliana	NP_567845.4	diacylglycerol kinase 7 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002325082.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTS1

Fln msg: your sequence is longer than subject: 503 - 33

Fln protein: MADSVEEQQQRGNGVESRESEISDLEDDEKYPETKRIAARSSMIDSFKTCGFCGLSIDKEDLRKRLIIPEYLRIAMVEAVRNEEFAYDEGRHRGDGTSTAPEAAIIVFINLKSGGRRGPTFKARLQELISEEQVFDLSEVKPSDFLRHGLGCLEKLASFGDHCAKETRDRIRIIAAGGDGTVGWILGSIVELRLESHKRIPPVGIIPLGTGNDLARSFGWGGSFPMAWRSAVKRYLDRAVSGPICRLDSWQVMLTPIAGQELNLPPAFRPQEAPTHQLGYGVEDSVSSNNSTSYKGTFYNYFSIGMDAQIAYGFHHLRNEKPYLARGPVSNKIIYSGYGCAQGWFCTPCSANPRVRGINNIVQMHIKKQSCSDWEILRIPSSVRAVVALNLHNYASGRNPWGHPRPDYLEKRGFVEAHPDDGLLEIFGLKEGWHSSFVMIDLISAKHLAQAAAFKLELRGGRRKRAYLQMDGEPWQHPLSERDSTMIEITRVPFQSLMISGE*

Protein Length: 504

Fln nts: ATGGGGAGACTCCAATTACCCAGCAGACACAACTTTCCCACGCTAAACGACTGTACGAAAACTTTTATTTACTCTTCTCATCAGACGTCGTGAGTTCGAAACCTCAGAGCATCCATAGGGTTTGTTTCCAAAGCC_-_ATGGCGGATTCAGTAGAAGAGCAGCAACAGAGAGGTAACGGGGTCGAATCCCGCGAATCGGAAATCAGTGACCTTGAAGACGATGAGAAATACCCCGAAACGAAGCGGATTGCGGCACGATCCTCCATGATCGATTCTTTCAAAACCTGTGGATTTTGTGGCCTCAGCATCGACAAGGAAGACTTGAGGAAAAGATTAATCATCCCAGAGTATCTGAGAATTGCCATGGTGGAAGCTGTGAGAAACGAAGAATTTGCTTACGACGAAGGTCGACATCGCGGGGACGGCACCAGCACTGCCCCGGAAGCTGCCATTATTGTCTTTATTAATTTGAAGAGCGGAGGACGTCGAGGCCCCACGTTTAAGGCTCGGCTTCAGGAGCTTATCAGTGAAGAGCAGGTATTTGATCTCTCAGAAGTTAAACCCTCAGATTTTCTTCGTCATGGTCTAGGTTGTTTGGAAAAACTGGCTAGCTTTGGAGATCATTGTGCTAAAGAAACCCGTGACAGAATACGCATTATCGCAGCAGGAGGTGATGGGACAGTGGGATGGATACTGGGAAGTATTGTTGAACTTCGTTTAGAAAGTCATAAGCGAATCCCACCAGTTGGAATCATTCCTCTTGGCACAGGCAATGATCTAGCTCGAAGTTTTGGTTGGGGTGGATCATTTCCCATGGCATGGAGGTCGGCAGTCAAGAGGTACTTGGACAGAGCAGTTAGTGGTCCAATTTGTCGCCTTGACAGTTGGCAGGTTATGTTGACACCGATAGCTGGACAAGAATTAAATCTACCTCCTGCTTTTAGACCACAAGAAGCTCCAACTCATCAGCTTGGTTATGGGGTTGAAGATAGTGTATCATCAAATAATTCCACTTCTTATAAAGGCACATTTTACAACTACTTCAGCATCGGTATGGATGCCCAAATAGCCTATGGGTTTCATCATTTGCGAAATGAGAAACCATATCTTGCTCGAGGTCCGGTTTCTAATAAGATAATCTATTCTGGGTATGGTTGTGCTCAAGGATGGTTTTGCACACCTTGTTCAGCAAATCCACGAGTGAGGGGAATAAACAACATTGTACAGATGCACATCAAAAAACAAAGTTGTTCTGATTGGGAGATTCTTCGTATCCCTTCAAGTGTCCGAGCAGTTGTTGCACTAAATCTTCACAATTATGCAAGTGGACGAAATCCTTGGGGCCACCCTAGGCCAGACTACTTGGAAAAGAGAGGTTTTGTTGAAGCACACCCTGATGATGGATTGCTTGAAATCTTTGGGCTAAAGGAGGGGTGGCATTCATCGTTTGTCATGATTGATCTTATATCAGCAAAGCATCTTGCTCAGGCAGCCGCTTTCAAATTAGAACTGAGGGGTGGGCGGAGGAAGCGAGCTTACTTGCAGATGGATGGTGAGCCCTGGCAGCATCCACTTAGCGAGCGCGATTCGACAATGATTGAGATAACAAGGGTTCCTTTCCAATCCCTCATGATCAGTGGAGAATGA___AGAACTTTTGGATTATCTCGTATTCAGCTTCAGAGTGTCCGAGTTGGGATGACTGAGCATGTACATCTATAAATTCCACTTGTGAATATCAGTGCTACTAGTGGCTTTTGCGTATTCAAAATCTATGTGTAATCTTCCAATGAAACTCTTCCATTTTTTTGTAATTAAAGCAATTTGACATTGTTGCACCTGCCCAGTGAGCCGAGGATATGTTCACAGTACGAATAAATGTGTCGGTAAGAAATTGTAGCATGTGTTGGTAAGGAATTATTTATGCGGTAAACACTGTAATGTAGTCCTATATTTCAGTTTTGATGTCCTTTTGTCACAGTGGTTTAGGTTAATGGTATTTATATACCGATCCACCTTACCCATGTTAAACGTATAAACAATAATAGCTGGAAATATTTAAGCATGGCCTGTGTGCTTCTCCTCGTACTGCTGCTTAGAGTATAGTTAACACGTATTTATAGGGCTGCCAAGAGATTCACAGATTTGGCCTTGCAAATGTATCGAGCATTTTAGCTGTAGGCGAACTTATTTTCCTTCAAATTAAGTAATTTCAATTTACAAGGCTGCCAAGAGTTTTACAGGTTTGGCCTCGCAAACGTATGAAGCCTGTTAACTGAATAATGTTAATTTGATATGGCAATTAATT

Fln Alignment:

Contig6063___MDGEPWQHPLSERDSTMIEITRVPFQSLMISGE
C0PTS1______________MDGEPWQHPLSESDSTMIEITRVPFQSLMISGE

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
132	85			14	0.993533
134		87	12		0.992554
135		87	12		0.992554
147	88		11		0.923564
223	88		11		0.923564
229	33	66			1.0
1307	12	87			0.992554
1309			12	87	0.992554
1310		87	12		0.992554
1311	87		12		0.992554
1416	12			87	0.992554
1606	90		10		0.90298
1660	87			12	0.992554
1662		88		11	0.992527
1663	11			88	0.992527
1665	11		88		0.992527
1672	10		90		0.991528
1773		12		87	0.993502
2091		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain