SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6057

Length: 2091 nt

UniGene Fasta

>sp_v3.0_unigene6057
AAGCATAGGCTCAGCTAGTGGGCTATCAACAACAGGAATACAGAATAGACTGGACAAAATAAGAATGGATGGAAATGCGGCTGCTGAACCCTCCATAATTGAGTCAAACTCTACTGGCATGACTGCGATTGGGTCCAGCAGTGGTGCCAACAGTCGAGCACAAGATATTGGCTCTTGTCAAACTCATCAAAATCCACCCTTTGGGAAAAATTTGGATGTAGCAACATGTTCAGAAGATGTAACAGATTCCAGTGCTAAAGTTTCGGAGCAGGTATTATGCCAAAATTCAGATGCTGGCAGAAGCTTGGCCTCCTCTGGGACAGAGAAATGTGGTGATGCTGGGGATGGTCCAGAGCCAACAATTACTTCCTCTTCTGGAGGTTCAGGTAATAGTGCAGGAAGGGCAGGAAAGGAGGCTACCAATACCAGCAAGAGGAAGAGTAGAGATGTGGAGGACTCTGAGTGCCAAAGTGAGGATGTTGAATATGAATCTGCAGAAGCAAAGAAGCCAGCTCCGTCACGCACTACAACCTCCAAAAGAAGTCGTGCTGCAGAAGTTCATAATTTGTCAGAAAGGAGGCGAAGGGACAGGATAAATGAGAAAATGAGGGCTTTACAAGAGCTTATACCTCACTGTAACAAGTCTGACAAAGCTTCGATGCTGGATGAAGCTATTGAGTACTTGAAAACACTTCAATTGCAAGTACAGATAATGTCAATGGGAGGTGGAATGGGTATGCCTCCATTTGTGTTTCCTGGAGGTATGCAGCATTTTCAGGTACCACAGATGGCACATCTGTCTCCTATGGGCATGGGCATAGGTATGGGATACGGCATGGGAGTGCTAGATATGGCTGCCACTTCAGGTCGACCTGTTATGTCATTGCCTTCCATGCATGTATCAGCACTTCCTGGTTCCACAATTCATTGCCAAGCTGCATTGCCCTTGTCTGGAATGCCTGGACCAAGCCTTCCAATGTCCAGGCTTCCTGGACCGGGATTACAAGTATCAGGGATGCCTGTATCAACTCTTCCGGTGTCTGGCTTACCTGGAACAACTCAGCCTGGATTAGTCTCAACCTCAGCTTCAGGCTCCACTGATTTGCATGATATGCAGAATGCAAATGTGATAGGTCATTATAAACATTATATGAATCATCATCAGATGCAAGGGCTGCCCCAGGTACTAAATGGAAACTTGTATAATTCTTCAATGGCACAACCTGCTCCTCAAAATCCAGTTCAGTCAGATGGCAGGGGAGCCCACAATACAGTTAGTGCATCTGGAAAGGCCGGCACCACTGGCTAGAAATGGCACCAGTAAATCATTTTCATCAATTTTTTTTTCCTGGGAATGCCCAAAGCGGATATGAGGCTGGGATTGATCCCTTTCTGCGAATGGATTCTTGAGTCTTCTGGGAACAAGTCACAGTAACAAAGCTGCCCTGACTTGGAGGCTTCTGGGGTGTTTTGCAGTTTGTATATTAGTTTTGGAAAAGCATTGGTCTTATATTTAGTTACATCTTCCAAAGGTTTTTAGTGGCCCCAAATATGTATCACAAAAGATCTAGCTTCCACATGGTGGTAGTGTCAATTAAGCGATGCAAATTGCATATTTTGCATCGAGTATGCCTATCGAGATCCCCTCTAACATGTCAGTGCTACCTTATACATGGTCAAGTTTTCTGTAATTATTCTTACAATGTTGATCATGCCAGGAGCTTAAAGGATGTTTAAAAGCTCCGAGGCATTTCAACCCATTCATTTTTGATAGATGTTTGTTTTCTTTCTAGATGTGAGAAAATAGTCTCATTTCTATTTGTTTAGGAGCATTTCCTAAGGTGGTCTGTGCTCTCAAGGCTGAAGGTGTATGCTATAAGCTTAATGAAGTTGGAAATGACATCAACAAACTCCTACTTTCAGCAATTGGGTTCTGGAATCTGGAAGGAGTTATTCCTGGTCATTCGTATAGGGCCAATTTGAATTTGTGATTGAAATATTAACTACACTTCATTATGACTCAACAGTTATCAGTCTTGCTGTTATTGTTGTTATGCAGTTTCACTCCTAAATAACAAAAAATTCTGCTCC

Ace file of the UniGene sp_v3.0_unigene6057

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Helix-loop-helix DNA-binding [Medicago truncatula]	-	-	5.0e-32	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Helix-loop-helix DNA-binding domain containing protein, expressed	-	-	5.729e-08	-

Source	Gene names
Sma3	ALC; AP22.25; AT3G59060; At1g09530; At2g20180; At3g59060; At4g00050; At4g28790; At4g36930; At5g58010; At5g67110; At5g67111; BHLH15; BHLH16; BHLH23; BHLH24; BHLH65; BHLH73; BHLH8; BHLH82; C7A10.430; EN100; EN101; EN103; EN107; EN108; EN96; EN98; EN99; F14J

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	phytochrome binding	GO:0010313	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	heme biosynthetic process	GO:0006783	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	-
Sma3	red, far-red light phototransduction	GO:0009585	Biological Process	-
Sma3	ethylene biosynthetic process	GO:0009693	Biological Process	-
Sma3	de-etiolation	GO:0009704	Biological Process	-
Sma3	gibberellic acid mediated signaling pathway	GO:0009740	Biological Process	-
Sma3	negative gravitropism	GO:0009959	Biological Process	-
Sma3	red or far-red light signaling pathway	GO:0010017	Biological Process	-
Sma3	fruit dehiscence	GO:0010047	Biological Process	-
Sma3	negative regulation of photomorphogenesis	GO:0010100	Biological Process	-
Sma3	response to red light	GO:0010114	Biological Process	-
Sma3	fruit development	GO:0010154	Biological Process	-
Sma3	red light signaling pathway	GO:0010161	Biological Process	-
Sma3	negative regulation of seed germination	GO:0010187	Biological Process	-
Sma3	chlorophyll biosynthetic process	GO:0015995	Biological Process	-
Sma3	positive regulation of anthocyanin metabolic process	GO:0031539	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	carpel development	GO:0048440	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001092	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G09530.1	PIF3, POC1, PAP3 phytochrome interacting factor 3 chr1:3077216-3079367 FORWARD LENGTH=524	8.0e-36	77%
RefSeq	Arabidopsis thaliana	NP_849626.1	transcription factor PIF3 [Arabidopsis thaliana]	1.0e-35	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABG4

Fln msg: your sequence is longer than subject: 415 - 244

Fln protein: MDGNAAAEPSIIESNSTGMTAIGSSSGANSRAQDIGSCQTHQNPPFGKNLDVATCSEDVTDSSAKVSEQVLCQNSDAGRSLASSGTEKCGDAGDGPEPTITSSSGGSGNSAGRAGKEATNTSKRKSRDVEDSECQSEDVEYESAEAKKPAPSRTTTSKRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKSDKASMLDEAIEYLKTLQLQVQIMSMGGGMGMPPFVFPGGMQHFQVPQMAHLSPMGMGIGMGYGMGVLDMAATSGRPVMSLPSMHVSALPGSTIHCQAALPLSGMPGPSLPMSRLPGPGLQVSGMPVSTLPVSGLPGTTQPGLVSTSASGSTDLHDMQNANVIGHYKHYMNHHQMQGLPQVLNGNLYNSSMAQPAPQNPVQSDGRGAHNTVSASGKAGTTG*

Protein Length: 416

Fln nts: AAGCATAGGCTCAGCTAGTGGGCTATCAACAACAGGAATACAGAATAGACTGGACAAAATAAGA_-_ATGGATGGAAATGCGGCTGCTGAACCCTCCATAATTGAGTCAAACTCTACTGGCATGACTGCGATTGGGTCCAGCAGTGGTGCCAACAGTCGAGCACAAGATATTGGCTCTTGTCAAACTCATCAAAATCCACCCTTTGGGAAAAATTTGGATGTAGCAACATGTTCAGAAGATGTAACAGATTCCAGTGCTAAAGTTTCGGAGCAGGTATTATGCCAAAATTCAGATGCTGGCAGAAGCTTGGCCTCCTCTGGGACAGAGAAATGTGGTGATGCTGGGGATGGTCCAGAGCCAACAATTACTTCCTCTTCTGGAGGTTCAGGTAATAGTGCAGGAAGGGCAGGAAAGGAGGCTACCAATACCAGCAAGAGGAAGAGTAGAGATGTGGAGGACTCTGAGTGCCAAAGTGAGGATGTTGAATATGAATCTGCAGAAGCAAAGAAGCCAGCTCCGTCACGCACTACAACCTCCAAAAGAAGTCGTGCTGCAGAAGTTCATAATTTGTCAGAAAGGAGGCGAAGGGACAGGATAAATGAGAAAATGAGGGCTTTACAAGAGCTTATACCTCACTGTAACAAGTCTGACAAAGCTTCGATGCTGGATGAAGCTATTGAGTACTTGAAAACACTTCAATTGCAAGTACAGATAATGTCAATGGGAGGTGGAATGGGTATGCCTCCATTTGTGTTTCCTGGAGGTATGCAGCATTTTCAGGTACCACAGATGGCACATCTGTCTCCTATGGGCATGGGCATAGGTATGGGATACGGCATGGGAGTGCTAGATATGGCTGCCACTTCAGGTCGACCTGTTATGTCATTGCCTTCCATGCATGTATCAGCACTTCCTGGTTCCACAATTCATTGCCAAGCTGCATTGCCCTTGTCTGGAATGCCTGGACCAAGCCTTCCAATGTCCAGGCTTCCTGGACCGGGATTACAAGTATCAGGGATGCCTGTATCAACTCTTCCGGTGTCTGGCTTACCTGGAACAACTCAGCCTGGATTAGTCTCAACCTCAGCTTCAGGCTCCACTGATTTGCATGATATGCAGAATGCAAATGTGATAGGTCATTATAAACATTATATGAATCATCATCAGATGCAAGGGCTGCCCCAGGTACTAAATGGAAACTTGTATAATTCTTCAATGGCACAACCTGCTCCTCAAAATCCAGTTCAGTCAGATGGCAGGGGAGCCCACAATACAGTTAGTGCATCTGGAAAGGCCGGCACCACTGGCTAG___AAATGGCACCAGTAAATCATTTTCATCAATTTTTTTTTCCTGGGAATGCCCAAAGCGGATATGAGGCTGGGATTGATCCCTTTCTGCGAATGGATTCTTGAGTCTTCTGGGAACAAGTCACAGTAACAAAGCTGCCCTGACTTGGAGGCTTCTGGGGTGTTTTGCAGTTTGTATATTAGTTTTGGAAAAGCATTGGTCTTATATTTAGTTACATCTTCCAAAGGTTTTTAGTGGCCCCAAATATGTATCACAAAAGATCTAGCTTCCACATGGTGGTAGTGTCAATTAAGCGATGCAAATTGCATATTTTGCATCGAGTATGCCTATCGAGATCCCCTCTAACATGTCAGTGCTACCTTATACATGGTCAAGTTTTCTGTAATTATTCTTACAATGTTGATCATGCCAGGAGCTTAAAGGATGTTTAAAAGCTCCGAGGCATTTCAACCCATTCATTTTTGATAGATGTTTGTTTTCTTTCTAGATGTGAGAAAATAGTCTCATTTCTATTTGTTTAGGAGCATTTCCTAAGGTGGTCTGTGCTCTCAAGGCTGAAGGTGTATGCTATAAGCTTAATGAAGTTGGAAATGACATCAACAAACTCCTACTTTCAGCAATTGGGTTCTGGAATCTGGAAGGAGTTATTCCTGGTCATTCGTATAGGGCCAATTTGAATTTGTGATTGAAATATTAACTACACTTCATTATGACTCAACAGTTATCAGTCTTGCTGTTATTGTTGTTATGCAGTTTCACTCCTAAATAACAAAAAATTCTGCTCC

Fln Alignment:

Contig6057___MRALQELIPHCNKSDKASMLDEAIEYLKTLQLQVQIMSXXXXXXXXXXXXXXXXQHFQVPQMAHLSPXXXXXXXXXXXXVLDMAATSGRPVMSLPSMHVSALPGSTIHCQAAXXXXXXXXXXXXXXRLPGPGLQVSGMPVSTLPVSGLPGTTQPGLVSTSASGSTDLHD-MQNANVIGHYKHYMNHHQMQGLPQVLNGNLYNSSMAQPAPQNPVQSDGRGAHNTVSASGKAGTTG
D5ABG4______________MRALQELIPHCNKSDKASMLDEAIEYLKTLQLQVQIMSMGGGMGMPPLVFPGGMQHFQVPQMAHLSPMGMGIGMGYSMGMLDMAATSGRPVMSLPSMHVSALPGSAIHCQAALPLSGMPGPSIPMSRLPGPGLQVSGLPVSTIPVSGLPGTTQPGLVSTSASGSTDLQDHMQNANVMGHYKHYMNHHQMQGPPQVINGNLYNASMAQPPPQNPVQSSGRGIHNAASASGKTGTTG

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
1020	80	20			0.995493
1084		83		16	0.994512
1085		83	16		0.994512
1086			16	83	0.994512
1087		83	16		0.994512
1133			87	12	0.992554
1304	11	88			0.923564
1307		11		88	0.923564
1308	11		88		0.923564
1309	11		88		0.923564
1314	77		22		0.999999
1325	14		85		0.993533
1327	85		14		0.993533
1577			12	87	0.992554
1580		87	12		0.992554
1581	87			12	0.992554
1582		87	12		0.992554
1584		12		87	0.992554
1585		12	87		0.992554
1586			87	12	0.992554
1590		12		87	0.992554
1591	87			12	0.992554
1594		12	87		0.992554
1961	14	85			0.993533
1963			85	14	0.993533
2027	33			66	0.997452
2028	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain