SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6018

Length: 1522 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6018

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptide transporter, putative n=1 Tax=Ricinus communis RepID=B9T6M4_RICCO	-	-	0.0	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Peptide transporter, putative	-	-	1.305e-27	-

Source	Gene names
Sma3	AT4g21680; At1g62200; At1g68570; At2g02020; At2g02040; At2g26690; At3g54140; At4g21680/F17L22_140; At5g01180; At5g19640; At5g46050; B1026C12.10; B1065G12.20; B1065G12.21; B1377B10.10; F14H20.11; F17L22.140; F19K23.13; F24B22.100; F24J5.19; F5D14.23; F7J8_

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	nitrate transmembrane transporter activity	GO:0015112	Molecular Function	-
Sma3	high affinity oligopeptide transporter activity	GO:0015334	Molecular Function	-
Sma3	dipeptide transporter activity	GO:0042936	Molecular Function	-
Sma3	tripeptide transporter activity	GO:0042937	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	response to nitrate	GO:0010167	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	nitrate transport	GO:0015706	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	dipeptide transport	GO:0042938	Biological Process	-
Sma3	tripeptide transport	GO:0042939	Biological Process	-
Sma3	response to leucine	GO:0043201	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G54140.1	ATPTR1, PTR1 peptide transporter 1 chr3:20045885-20048154 REVERSE LENGTH=570	69%
RefSeq	Arabidopsis thaliana	NP_190982.1	peptide transporter PTR1 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002323559.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVR2

Fln msg: your sequence is shorter than subject: 393 - 594

Fln protein: VVTLAVTQINIGALIASSVLVWVQENVGWEWGFGIPTVAMAIAVCSFFSGTRLYRHQKPGGSPLTRIAQVLVASFRKWNTPVPRDKSGLYEVQDKESVIEGSRKLEHTDGLLFLDKAAVETVNDKSTDGYNNPWRLCTVTQVEELKAVVRILPIWASGIIFATVYSQMSTLFVEQGGTMDASLGPHFKIPPASLSIFDTLSVIFWVPVYDRLIVPVARKYTGHQRGFTQLQRMGIGLVISIFSMVVAGLVEIKRLNMVKEHNYYERLNIPMSIFWQIPQYFLIGASEIFTFIGQLEFFYDQAPDAMRSLMSALSLTTVALGNYLSTLLVTIVTDTTTRHGKKGWIPDNLNYGHIDYFFWLLAILSTLNFLVYLLISRWYTYKRATGVFHVSK*

Protein Length: 394

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTAACATTGGTGCTCTTATTGCTAGTAGTGTTCTTGTTTGGGTCCAAGAGAATGTTGGTTGGGAGTGGGGTTTTGGAATTCCAACTGTAGCCATGGCAATAGCTGTGTGTAGCTTCTTTTCAGGTACCCGTCTATACCGACATCAAAAGCCAGGGGGCAGTCCCTTGACCCGGATAGCCCAGGTGTTAGTTGCATCATTTCGAAAATGGAACACCCCTGTTCCACGTGATAAGTCTGGTCTTTATGAAGTTCAAGATAAGGAGTCTGTCATTGAAGGAAGTCGAAAGCTTGAGCATACAGATGGATTGCTCTTTCTAGACAAAGCTGCAGTAGAGACAGTAAATGATAAAAGTACAGATGGCTACAATAACCCATGGAGACTTTGCACTGTGACTCAAGTGGAGGAGTTAAAAGCAGTTGTCCGTATTCTTCCAATTTGGGCCAGCGGGATTATTTTTGCTACTGTCTATAGTCAAATGAGTACATTGTTTGTGGAACAAGGAGGCACTATGGATGCCAGTCTTGGTCCCCATTTTAAAATTCCACCAGCATCATTATCTATATTTGATACTCTCAGTGTCATATTCTGGGTTCCAGTTTATGACCGTCTAATTGTTCCAGTTGCACGCAAATATACTGGTCATCAAAGGGGCTTTACCCAACTACAGCGTATGGGGATTGGCTTGGTCATTTCTATTTTTTCCATGGTGGTTGCAGGCCTTGTTGAGATCAAGAGACTCAACATGGTCAAGGAGCATAACTACTATGAAAGATTAAACATACCCATGAGTATTTTTTGGCAGATTCCCCAGTATTTCTTAATAGGTGCTTCTGAAATTTTCACCTTCATAGGGCAACTAGAGTTCTTTTATGATCAAGCACCTGACGCTATGCGAAGCTTAATGAGTGCACTTTCACTTACTACAGTTGCATTAGGCAATTACCTGAGTACTCTGCTGGTTACCATTGTAACTGACACTACAACAAGGCATGGAAAGAAAGGATGGATTCCCGATAACTTGAACTATGGACATATTGATTACTTCTTTTGGCTTCTGGCCATCCTGAGCACTCTGAACTTTCTGGTCTATCTTTTAATTTCACGTTGGTACACATACAAGAGAGCCACAGGAGTGTTCCACGTAAGCAAGTAA___GCCTATTCATTCAGAAGGTGCACTAGCAGCCCCTCTAGATTCATACAAATATTTTCTGCAGATGTGATGTTGCTGAAAGAAGTAAATTCAAATTGAGACTTTTGTTTGTTATTATAACTATGCAAATGCAGCTATCGTAGTGGTCTGCACTGGCAACAAACTGTATAAGATGTGCAAAAGATCTTCTGTTTTACTGTTTTTTGAGGAGAGACTTGTTGCCTAGCTTAACAAAACTGGGACATAATTCTCTTTGGATGACAAGCTGCCAACTTTGATTTTTGTATATAAATATGATTGATGGCCACAATCATCTGTATTAATATATGGTGATTGTCTTATTTT

Fln Alignment:

Contig6018___INIGALIASSVLVWVQENVGWEWGFGIPTVAMAIAVCSFFSGTRLYRHQKPGGSPLTRIAQVLVASFRKWNTPVPRDKSGLYEVQDKESVIEGSRKLEHTDGLLFLDKAAVETVNDKSTDGYNNPWRLCTVTQVEELKAVVRILPIWASGIIFATVYSQMSTLFVEQGGTMDASLGPHFKIPPASLSIFDTLSVIFWVPVYDRLIVPVARKYTGHQRGFTQLQRMGIGLVISIFSMVVAGLVEIKRLNMVKEHN--YYERLNIPMSIFWQIPQYFLIGASEIFTFIGQLEFFYDQAPDAMRSLMSALSLTTVALGNYLSXXXXXXXXXXXXRHGKKGWIPDNLNYGHIDYFFWLLAILSTLNFLVYLLISRWYTYKRAT
A9NVR2______________INVGALVSSSVLVWVQDNVGWGWGFGIPTLFMGLAIGSFFSGTPLYRLQKPGGSPVTRMCQVVVASLRKLRKTVPLDHSHLYEVQDRNSAIQGSRKLEHTDEFKCLDKSAIITDDDVRKGGFSNPWRLCTVTQVEEMKILLRMFPIWATGIVFAAVYSQISTMFVEQGMTLDTSIGSRFHIPPASLSVFDVVSVMIWVPVYDRVIVPIVSKYTKRERGFTELQRMGIGLFISILAMVAAALVEIRRLNIVKTYDLVYDKGTPVPMSIFWQIPQYFLVGASEVFTFVGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSLIVTIVMFATTKGGNIGWIPDNLNEGHLDYYFWVLASLSVLNLLVYVSCAHRYKYKKAS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
562		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain