SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6012

Length: 2848 nt

UniGene Fasta

>sp_v3.0_unigene6012
ATGGGGGTTTTGATCAATATGCAGGAGCGCCAGCATTTAATTATATTATTAATCCGTCTTCAAACATTCAGTAAAATATTGTCACCCATTTCGATATGTGTGTCTATACTGTCGCTGCCATGGATTGTTTCTGGATGCAATGATTTGCATGCACTGAAATACCAGGTTTTCGTATGCAACAAAATACCTATGCTCCGAGATTCCAAGAACACTACCCTGCTTGGGAAGATGCTATAAATTCAGTGTATTTGGTTTTGTCTCTGCAAAGCGGAGAGAGTAGAGAAAATGACGTCACATTTTCCTATGATGCATGCATCAACACCAGACAATTTACCTTCTTCTGGGGCAATTCATGGCTTGTACCAAAATCTTTTGAAGCAGAAAACTATTACTCCTGTCTACTGTAGACAGTCAACTCAAAATACAAATAATTGCGTAAAGTATAGTGGGGATGTTGGCTACCCCAATACATTGAAAAATATAATCAGGACAAGGAAACAGGAGAATTTGACATGGGGTTTGTGCCGAGATAGATACTTGGCTTCTCTGCATACAGGAAATCAGTGCCGTTTTTTGCCTAAAGCTAAGAGGGATTCATGTTCAGAGCCTGACATCAATGTATCGACATTTGATCAGAAGAAATGCAATCAGAAGGCAGAAAACCCATTTTCTAGCTTTCTCGAAGGTTTTAGCAATTCATTGGGGATGTGCAACCAAAAACTGCAGGTGGATGATTTTTCACAGGAGTTAATGGTCCTTGCCATCCCAGCAATTGTAGGACAGGCAATTGAACCAATGGCACAGTTGATGGAGACAGCTTATGTGGGAAGATTAGGTCCGGTGGAGTTAGCTTCTGTTGGAGTTTCTATTTCAGTCTTCAATCTGATCTCAAAATTATTCAACATCCCTCTCCTCAATGTGACAACATCATTTGTGGCTGAAGATGCTTCAAAAACTGTCCGAAGTGAGGATTATATTGATAGAAAAAGTTCCATTCATGGTGACCATATTCATGTAGATAAAGTGGAATGCCAAAAGAATTTAAATGGTTGGATAGAAAAGAAGAAGTTACCTTCAGTTTCGACTGCGTTGGTTTTGGCAGCTGGTCTCGGTTTTGTTGAAGCTGCCGCCTTAGCTTTTGGAGCAGGGCCTTTTTTGTATTTCATGGGTATACCTGCTGCTTCGCCAATGCGCCTTCCATCAGAGCGATACCTTGCTTTAAGAGCTCTTGGTGCTCCAGCAGTAGTGATTTCACTTGCTGTGCAAGGAGTATTCCGTGGTTTGAAAGACACAAAAACTCCTTTATATGCCTCAGGAGCTGGCAACATATTGAATGCACTGCTGTTTCCTATTTGCATATTCACTCTTCGTTTTGGTGTTGGTGGAGCAGCTATTGCCACTGTTGCCTCTCAGTACTTCATTGCATTTGTGATGTTATGGAACTTAAATAAACAAGTAATACTCCTACCTCCCAACCTGGAAGAACTTCGGTTTGATCGTTACTTGAAATCTGGTGGGTTTTTGCTAGGAAGGACTGTAGCTGTGCTTGTGACAATGACATTAGGTACATCAATGGCCGCTAGGCAGGGTCCTATTTTCATGGCTGGCCATCAGATTTGCTTGCAAGTTTGGCTAGCAGTATCTCTTCTTACTGATGCTTTAGCACTTGCTGGACAGTCACTCATTGCTAGTGCATTTACAAAAGGGGACTATATCCGGGTCAAAAAGGTTGCTCTTAAGGTTCTTCAGATAGGAGCAGGATCTGGTATTGCCCTAGCTGTGATTCTATTTATAGGATTTGGATCCTTTGCTAAGTTATTCACAAAAGATGAAGCGGTCTTGGAGGTTGTAAGATATGGAGTTCTGTTTGTTGCTGGTTCTCAACCAATCAATGCCCTTGCATTTGTATTTGATGGCCTTCACTATGGAATATCAGATTTTGCATATGCAGCCTATGCAATGATGATTGTTGGAACAATATCATCGGCATTTTTGGCATTTGCACCATCTTCGCTAGGTATAGGTGGAGTTTGGTTAGGGCTGGCTCTTTTCATGGGCTTGCGCATGGCAGCTGGATTTTGGAGGTTGATGGATAAAAATGGGCCTTGGTGGTTCTTAAGGCAAGATTTGAAGGAAATGGAGATTGGCCTTTGACTAGGAATCTTCCAGAAAATTTTCTCACAAGCCATTGTTTTGAAGCAAGGGCCTTGATGTTCGATACGCGAATCCGTGTTTCGGATATGGATACGGATCCACCCAGATCCATGTAGGATCCACCTCAGAAACGGATCCCATGCTACTGAAACGGATCTTGTGCCAGGGAGCCCTCACATGCGGAATCCAAAGCAAATAACATTAGAGTGTTTGTTTTATTTATTTATTTTTTAAGAATATTTGCCACATATTTGAAATTCTAAAATCCAAATATTCTATTTAGGTCTTAGTTTGATTCTTATTAGTAATCTGTAGGTTGTATAGTGGTATAAGTTAGTTATTAATTGACCTCTAGGCTATATAGCCCATGATAATGCTGCCAGGAAAGGTCTAACAGGTCAAAATTTTAATTTTCATTTTTTGATAATGATAACTGGAAAGCTTTGAGACAATACATAGATAATAATGTAGTGTACAAAGGATGTTTATGCCATTAATAATTTAATTAGATCAATCCCATCCAATTCTAGGTCAAGAGTCCTATGATAGCAATATTATACATCATGATTAAACAATGTACAATATTCTTTTACCATTGTAACGAGATGGGAATTTTTATATTTTAAGGCAAATTTCAAGGAAGATGACAAGGTTGATCATGACGTAGAGCTGAAATATTCATATGATGAGCATG

Ace file of the UniGene sp_v3.0_unigene6012

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-damage-inducible protein f, putative n=1 Tax=Ricinus communis RepID=B9SIJ1_RICCO	-	-	0.0	52%
FL-Next	sp=MATE efflux family protein 3, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%
Sma3	DNA-damage-inducible protein f, putative	-	-	6.379e-25	-

Source	Gene names
Sma3	AACT1; AP4_H06.1; AT4g38380; At1g51340; At2g38330; At3g08040; F11M15.20; F17A17.38; F22I13.150; FRD3a; FRD3b; GSVIVT00005010001; GSVIVT00011594001; GSVIVT00024609001; GSVIVT00025560001; GSVIVT00028804001; GSVIVT00028805001; GSVIVT00036205001; GSVIVT000362

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-
Sma3	cellular iron ion homeostasis	GO:0006879	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G38380.1	MATE efflux family protein chr4:17971855-17974787 REVERSE LENGTH=560	55%
RefSeq	Arabidopsis thaliana	NP_195551.5	mate efflux domain-containing protein [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002305555.1	predicted protein, partial [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SVE7

Fln msg: your sequence is longer than subject: 623 - 560

Fln protein: MTSHFPMMHASTPDNLPSSGAIHGLYQNLLKQKTITPVYCRQSTQNTNNCVKYSGDVGYPNTLKNIIRTRKQENLTWGLCRDRYLASLHTGNQCRFLPKAKRDSCSEPDINVSTFDQKKCNQKAENPFSSFLEGFSNSLGMCNQKLQVDDFSQELMVLAIPAIVGQAIEPMAQLMETAYVGRLGPVELASVGVSISVFNLISKLFNIPLLNVTTSFVAEDASKTVRSEDYIDRKSSIHGDHIHVDKVECQKNLNGWIEKKKLPSVSTALVLAAGLGFVEAAALAFGAGPFLYFMGIPAASPMRLPSERYLALRALGAPAVVISLAVQGVFRGLKDTKTPLYASGAGNILNALLFPICIFTLRFGVGGAAIATVASQYFIAFVMLWNLNKQVILLPPNLEELRFDRYLKSGGFLLGRTVAVLVTMTLGTSMAARQGPIFMAGHQICLQVWLAVSLLTDALALAGQSLIASAFTKGDYIRVKKVALKVLQIGAGSGIALAVILFIGFGSFAKLFTKDEAVLEVVRYGVLFVAGSQPINALAFVFDGLHYGISDFAYAAYAMMIVGTISSAFLAFAPSSLGIGGVWLGLALFMGLRMAAGFWRLMDKNGPWWFLRQDLKEMEIGL*

Protein Length: 624

Fln nts: ATGGGGGTTTTGATCAATATGCAGGAGCGCCAGCATTTAATTATATTATTAATCCGTCTTCAAACATTCAGTAAAATATTGTCACCCATTTCGATATGTGTGTCTATACTGTCGCTGCCATGGATTGTTTCTGGATGCAATGATTTGCATGCACTGAAATACCAGGTTTTCGTATGCAACAAAATACCTATGCTCCGAGATTCCAAGAACACTACCCTGCTTGGGAAGATGCTATAAATTCAGTGTATTTGGTTTTGTCTCTGCAAAGCGGAGAGAGTAGAGAAA_-_ATGACGTCACATTTTCCTATGATGCATGCATCAACACCAGACAATTTACCTTCTTCTGGGGCAATTCATGGCTTGTACCAAAATCTTTTGAAGCAGAAAACTATTACTCCTGTCTACTGTAGACAGTCAACTCAAAATACAAATAATTGCGTAAAGTATAGTGGGGATGTTGGCTACCCCAATACATTGAAAAATATAATCAGGACAAGGAAACAGGAGAATTTGACATGGGGTTTGTGCCGAGATAGATACTTGGCTTCTCTGCATACAGGAAATCAGTGCCGTTTTTTGCCTAAAGCTAAGAGGGATTCATGTTCAGAGCCTGACATCAATGTATCGACATTTGATCAGAAGAAATGCAATCAGAAGGCAGAAAACCCATTTTCTAGCTTTCTCGAAGGTTTTAGCAATTCATTGGGGATGTGCAACCAAAAACTGCAGGTGGATGATTTTTCACAGGAGTTAATGGTCCTTGCCATCCCAGCAATTGTAGGACAGGCAATTGAACCAATGGCACAGTTGATGGAGACAGCTTATGTGGGAAGATTAGGTCCGGTGGAGTTAGCTTCTGTTGGAGTTTCTATTTCAGTCTTCAATCTGATCTCAAAATTATTCAACATCCCTCTCCTCAATGTGACAACATCATTTGTGGCTGAAGATGCTTCAAAAACTGTCCGAAGTGAGGATTATATTGATAGAAAAAGTTCCATTCATGGTGACCATATTCATGTAGATAAAGTGGAATGCCAAAAGAATTTAAATGGTTGGATAGAAAAGAAGAAGTTACCTTCAGTTTCGACTGCGTTGGTTTTGGCAGCTGGTCTCGGTTTTGTTGAAGCTGCCGCCTTAGCTTTTGGAGCAGGGCCTTTTTTGTATTTCATGGGTATACCTGCTGCTTCGCCAATGCGCCTTCCATCAGAGCGATACCTTGCTTTAAGAGCTCTTGGTGCTCCAGCAGTAGTGATTTCACTTGCTGTGCAAGGAGTATTCCGTGGTTTGAAAGACACAAAAACTCCTTTATATGCCTCAGGAGCTGGCAACATATTGAATGCACTGCTGTTTCCTATTTGCATATTCACTCTTCGTTTTGGTGTTGGTGGAGCAGCTATTGCCACTGTTGCCTCTCAGTACTTCATTGCATTTGTGATGTTATGGAACTTAAATAAACAAGTAATACTCCTACCTCCCAACCTGGAAGAACTTCGGTTTGATCGTTACTTGAAATCTGGTGGGTTTTTGCTAGGAAGGACTGTAGCTGTGCTTGTGACAATGACATTAGGTACATCAATGGCCGCTAGGCAGGGTCCTATTTTCATGGCTGGCCATCAGATTTGCTTGCAAGTTTGGCTAGCAGTATCTCTTCTTACTGATGCTTTAGCACTTGCTGGACAGTCACTCATTGCTAGTGCATTTACAAAAGGGGACTATATCCGGGTCAAAAAGGTTGCTCTTAAGGTTCTTCAGATAGGAGCAGGATCTGGTATTGCCCTAGCTGTGATTCTATTTATAGGATTTGGATCCTTTGCTAAGTTATTCACAAAAGATGAAGCGGTCTTGGAGGTTGTAAGATATGGAGTTCTGTTTGTTGCTGGTTCTCAACCAATCAATGCCCTTGCATTTGTATTTGATGGCCTTCACTATGGAATATCAGATTTTGCATATGCAGCCTATGCAATGATGATTGTTGGAACAATATCATCGGCATTTTTGGCATTTGCACCATCTTCGCTAGGTATAGGTGGAGTTTGGTTAGGGCTGGCTCTTTTCATGGGCTTGCGCATGGCAGCTGGATTTTGGAGGTTGATGGATAAAAATGGGCCTTGGTGGTTCTTAAGGCAAGATTTGAAGGAAATGGAGATTGGCCTTTGA___CTAGGAATCTTCCAGAAAATTTTCTCACAAGCCATTGTTTTGAAGCAAGGGCCTTGATGTTCGATACGCGAATCCGTGTTTCGGATATGGATACGGATCCACCCAGATCCATGTAGGATCCACCTCAGAAACGGATCCCATGCTACTGAAACGGATCTTGTGCCAGGGAGCCCTCACATGCGGAATCCAAAGCAAATAACATTAGAGTGTTTGTTTTATTTATTTATTTTTTAAGAATATTTGCCACATATTTGAAATTCTAAAATCCAAATATTCTATTTAGGTCTTAGTTTGATTCTTATTAGTAATCTGTAGGTTGTATAGTGGTATAAGTTAGTTATTAATTGACCTCTAGGCTATATAGCCCATGATAATGCTGCCAGGAAAGGTCTAACAGGTCAAAATTTTAATTTTCATTTTTTGATAATGATAACTGGAAAGCTTTGAGACAATACATAGATAATAATGTAGTGTACAAAGGATGTTTATGCCATTAATAATTTAATTAGATCAATCCCATCCAATTCTAGGTCAAGAGTCCTATGATAGCAATATTATACATCATGATTAAACAATGTACAATATTCTTTTACCATTGTAACGAGATGGGAATTTTTATATTTTAAGGCAAATTTCAAGGAAGATGACAAGGTTGATCATGACGTAGAGCTGAAATATTCATATGATGAGCATG

Fln Alignment:

Contig6012___SLHTGNQCRFLPKAKRDSCSEPDINVSTFDQKKCNQKAENPFSSFLEGFSNSLGMCNQKLQVDDFSQELMVLAIPAIVGQAIEPMAQLMETAYVGRLGPVELASVGVSISVFNLISKLFNIPLLNVTTSFVAEDASKTVRSEDYIDRKSSIHGDHIHVDKVECQKNLNGWIEKKKLPSVSTXXXXXXXXXXXXXXXXXXXXXPFLYFMGIPAASPMRLPSERYLALRALGAPAVVISLAVQGVFRGLKDTKTPLYASGAGNILNALLFPICIFTLRFGVGGAAIATVASQYFIAFVMLWNLNKQVILLPPNLEELRFDRYLKSGGFLLGRTVAVLVTMTLGTSMAARQGPIFMAGHQICLQVWLAVSLLTDALALAGQSLIASAFTKGDYIRVKKVALKVLQIGAGSGIALAVILFIGFGSFAKLFTKDEAVLEVVRYGVLFVAGSQPINALAFVFDGLHYGISDFAYAAYAMMIVGTIXXXXXXXXXXXXGIGGVWLGLALFMGLRMAAGFWRLMDKNGPWWFLRQDLKEM
Q9SVE7______________SLHTNPNPMFPFVTRRKSQTNPDCGVVKLGE-------EDDSCSSLDKLPEVNGVHTGVARPVDIKRELVMLSLPAIAGQAIDPLTLLMETAYIGRLGSVELGSAGVSMAIFNTISKLFNIPLLSVATSFVAEDIAK-IAAQDLASEDSQ--------SDIPSQ----GLPERKQLSSVSTALVLAIGIGIFEALALSLASGPFLRLMGIQSMSEMFIPARQFLVLRALGAPAYVVSLALQGIFRGFKDTKTPVYCLGIGNFLAVFLFPLFIYKFRMGVAGAAISSVISQYTVAILMLILLNKRVILLPPKIGSLKFGDYLKSGGFVLGRTLSVLVTMTVATSMAARQGVFAMAAHQICMQVWLAVSLLTDALASSGQALIASSASKRDFEGVKEVTTFVLKIGVVTGIALAIVLGMSFSSIAGLFSKDPEVLRIVRKGVLFVAATQPITALAFIFDGLHYGMSDFPYAACSMMVVGGISSAFMLYAPAGLGLSGVWVGLSMFMGLRMVAGFSRLMWRKGPWWFMHTSDKRL

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
1443	66		33		0.997452
1462	87		12		0.992554
1487	37	62			1.0
1556	80		20		0.995493
1607			83	16	0.994512
1609		80		20	0.995493
1636	66		33		1.0
1677	83		16		0.994512
1841		15		84	0.999986
1998		90		10	0.90298
2013		88		11	0.923564
2220		11		88	0.923564
2315			87	12	0.992554
2365		25		75	0.996473
2456	75		25		0.996473
2469	75		25		0.996473
2521	25	75			0.996473
2546		75		25	0.996473
2683		10		90	0.90298
2750	87		12		0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
2369	2383	TTTA TTTA TTTA TTT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain