SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6006

Length: 3170 nt

UniGene Fasta

>sp_v3.0_unigene6006
AATGTATAAAGACAGTTGAGCTTGATGCAGCTCTTGGAGGCCGTGCAGTGCAATACCGTGAATTGCAGGGCCATGAAACTGACAAATTTCTGTCATATTTCAAGCCATGTATTATTCCTTTGGAAGGGGGTGCAGCTTCTGGATTTAAAAAACCTGAGATAGAAAATTTTGAGCCGCGCCTTTATGTATGTAAGGGCAGGCGTGTTGTAAGAGTAAAACAGGTACCTTTTGCGCGGACTTCATTGAACCACGATGATGTTTTTGTCCTTGATACTGAGTCGAAAGTGTACCAATTCAATGGGGCATCATCCAACATACAGGAAAGAGCGAAGGCCTTGGAAGTGGTGCAATATATCAAAGATGAATACCATGAAGGGAAATGTGACATTGCAATAGTTGATGATGGGAAGCTTGTAGCAGAATCTGACTCCGGAGAGTTTTGGGCTCTGTTCGGAGGTTTTGCTCCCATTGGCAAGAAGAATGGCAATGATGATGATTCTAGAATGGAATCAACTCCTGGAAAACTTTACAGCATTGTGGAAGGGGAGATAAAGATTATTGAGGGTCCCTTGTCTAAGAGTATGCTGGAGTCAAACAAATGTTATCTACTTGATTGTGGTGCCGAGGTATATGTGTGGGTTGGTCGAGTGACACAATTGGAGGAGAGAAAGTCTGCAAGTCTAATTGCAGAGGAATTCATTTCTAATCAAAAACGACCAAGGAACACACACATAACTCGAGTTATCCAGGGATTTGAGACACTGCCTTTTAGGTCAAATTTTGACTCATGGTCACTTGGCAGTGGAACTTCGGGCTCTGAGGATGGAAGAGGCAAAGTTGCTGCATTACTGAAGCAACAAGGAATCAATGTGAAGGGAATTTTGAAGGCAACTCCACTGAAAGAAGAAATTCCACCATTGCTTGAGGGAAATGGGAAACTTGAGGTTTGGAGGGTCAAGAATGTTTCTAAAGCCCCAGTTCCTAAAGAGGATATTGGCAAATTCTACAGTGGTGACTGCTATATTATACTTTATACTTACCACTCTGGAGATAGAAAAGATGATTATTTTCTTTGCTTCTGGCTAGGGAAACAGAGCACCCAGGAGGATCAAGCAGTAGCAGCTCGTTTAACAAATACAATGGCTAACTCTCTAAAAGGAAGACCTGTACAGGGACGTATTCTAGAAGGAAAAGAGCCACCTCAGTTTATTGGATTATTCCCTAACATGACCATTTTAAAGGGTGGATTAAGTGTTGGCTACAAAAAATACATTGCTGAGAAAGGCATCAATGATGAGACATACAACGGGGATGGTATTGCCCTCGTTCAAGTTTGTGGTACAGGGCCTCACAATAGCAAAGCAATTCAAGTCGATCCGGTGGCAGAGTCTTTAAATTCTTGCGACTGCTTTTTACTGCAAACTGGGACGTCACTGTTTGCTTGGCATGGAAACTCTAGTACATTGGAGCAGCAACACTCAGTTGCCAGAATTGCTGAGTTTCTTAAACCGGGTACTCTCTTGAAAGCTGTGAAGGAAGGAACAGAGCCGGCAGCATTTTGGAATGCATTGGGAGGGAAACAAAGCTATGTAACACAGAGGAAAGCGCAGGAAACAAGCAAAGATCCTCATTTGTATGCGTGCACATTTGAGAATGGCATATTGCAGGTTTCCGAAGTCTTTAACTTCACACAGGATGATTTGTTAACGGAGGATATTATGGTCTTAGATACACATACCGAGGTTTTTATTTGGGTTGGTCAGCATGCTGATACCAAAGAAAAACAGCAAGCTTTTGAGATTGGTCAGAAGTACATGGAACGTGCAGCTTTATTGGAAGGGTTATCTCCAGATACACCACTTTACAAGGTCACTGAGGGAAATGAACCGTCTTTCTTCACAAGGTTTTTTGCTTGGGATGCTACTAAAGCTGTGATCCAAGGCAATTCGTTTGAAAAAAAAATCACATCTTTTCAAGGGATACCCGTTGAAGCTGTTGAGAATCTGAAAAGGTCAATGGCATCCGATGATACTGCTCCCTTTGAAAGTACTATAGAGAGATCTGACTCCTCAAATGATGTAAGACGGGGTGGGCCAACTCAAAGAGCGGCTGCACTGGCTGCATTGTCTTCTGTTTTTGGTTCTGGCAGTGGGGATAAAGGTGCACCTAAACCTTCAAGACCATCTAGATCTATTGTGAATAAGTCCTCTCAAAGAGCAGCTGCTGTTGCAGCATTATCTGGCGTTCTGAATGTTGAGCCAAAGAGCAGTTTACCTGGAGCCCCACCTGCACCAACAACTCTGGTTGCCGATGAAAGTGCTTCCTCAGTTGATACAGTTTCAGACACATCAAAGAATGAGACAAACAGCACAACTACTGAGACTGAAGAGTTGTCACCAAAGCAAGAAGCATCTGTTACTGAAGATGGTGGAAAAGTAGAAGACAGTATTCCAGAGAATAATGGAGAAGATGTTTCTACAAAAAACGAGATTGCAGTGAAGCAAGAGGAGAATGGATGTGCTGTTACTTATAGCTATGAGCAACTGATAACTAGATCCACTAATCCTGCTGCTGGAATTGATCCCAAAAAGAGAGAGACATACTTATCATCAGAGGAGTTCCAAAGTGTTTTTGGAATGGACCGGAAGAAATTTTATGAGCAACCAAAGTGGAAGCAGGATTTGCAGAAGAAGTCTGTTGATATGTTTTAGGGCCCGGGACCAATTGTTTGGTTGATCTACATCGTTGTAGAAAATAGTTAATGCCTTTGGCTCTACCAAAGGAGTTTAGTTATTGAATGTTGGTGGTCATTTTAACCAGTTGCTATTCATGGAAGTAATTTTTTAGCCATTTCTTATTCTTGGGAGAGTGTTCAGATTCTGGAGGTCAAAACCTAGTGATTGTGTGCGTGAATCCGTGCCAGCTGTATCGATTGTATACTAGTTAATATGCTGCTTGTGGAACATTCAAAGGGGTATTACCTCTTTAGTGTATGCCTTCCTCGTTTGTATCCAAGGCTCTATATTGCTGTTAGATAAAAGTTCTGTTTACAGCGTTATGTTTGAAAAACTCATTCTTTAAATTCTATGTAATTGTTATTTTTTTCCTGTTATCCTGCTATATTGTAATTTTTGCATTGATCTTATCAAATAAACGTTACTTCTACATAG

Ace file of the UniGene sp_v3.0_unigene6006

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	actin bundling protein ABP135 [Lilium longiflorum]	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Putative villin	-	-	2.329e-12	-

Source	Gene names
Sma3	ABP115; ABP29; AT2G29890; AT3G57410; At2g41740; At3g57410; At4g30160; At4g30160/F9N11_10; At5g57320; B1047G05.32; F28O9.260; F6G3.190; F9N11.10; GSVIVT00025610001; GSVIVT00031340001; LOC_Os03g24220; MtrDRAFT_AC155282g32v2; OSIGBa0118P15.6; OSJNBa0041A02.2

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytoskeleton	GO:0005856	Cellular Component	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	cytoskeleton organization	GO:0007010	Biological Process	-
Sma3	barbed-end actin filament capping	GO:0051016	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Villin headpiece	IPR003128	-	-
Sma3	Gelsolin	IPR007122	-	-
Sma3	Gelsolin domain	IPR007123	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G41740.1	VLN2, ATVLN2 villin 2 chr2:17410962-17416878 REVERSE LENGTH=976	58%
RefSeq	Arabidopsis thaliana	NP_565958.1	villin 2 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002322720.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL35

Fln msg: your sequence is longer than subject: 903 - 610

Fln protein: CIKTVELDAALGGRAVQYRELQGHETDKFLSYFKPCIIPLEGGAASGFKKPEIENFEPRLYVCKGRRVVRVKQVPFARTSLNHDDVFVLDTESKVYQFNGASSNIQERAKALEVVQYIKDEYHEGKCDIAIVDDGKLVAESDSGEFWALFGGFAPIGKKNGNDDDSRMESTPGKLYSIVEGEIKIIEGPLSKSMLESNKCYLLDCGAEVYVWVGRVTQLEERKSASLIAEEFISNQKRPRNTHITRVIQGFETLPFRSNFDSWSLGSGTSGSEDGRGKVAALLKQQGINVKGILKATPLKEEIPPLLEGNGKLEVWRVKNVSKAPVPKEDIGKFYSGDCYIILYTYHSGDRKDDYFLCFWLGKQSTQEDQAVAARLTNTMANSLKGRPVQGRILEGKEPPQFIGLFPNMTILKGGLSVGYKKYIAEKGINDETYNGDGIALVQVCGTGPHNSKAIQVDPVAESLNSCDCFLLQTGTSLFAWHGNSSTLEQQHSVARIAEFLKPGTLLKAVKEGTEPAAFWNALGGKQSYVTQRKAQETSKDPHLYACTFENGILQVSEVFNFTQDDLLTEDIMVLDTHTEVFIWVGQHADTKEKQQAFEIGQKYMERAALLEGLSPDTPLYKVTEGNEPSFFTRFFAWDATKAVIQGNSFEKKITSFQGIPVEAVENLKRSMASDDTAPFESTIERSDSSNDVRRGGPTQRAAALAALSSVFGSGSGDKGAPKPSRPSRSIVNKSSQRAAAVAALSGVLNVEPKSSLPGAPPAPTTLVADESASSVDTVSDTSKNETNSTTTETEELSPKQEASVTEDGGKVEDSIPENNGEDVSTKNEIAVKQEENGCAVTYSYEQLITRSTNPAAGIDPKKRETYLSSEEFQSVFGMDRKKFYEQPKWKQDLQKKSVDMF*

Protein Length: 904

Fln nts: AATGTATAAAGACAGTTGAGCTTGATGCAGCTCTTGGAGGCCGTGCAGTGCAATACCGTGAATTGCAGGGCCATGAAACTGACAAATTTCTGTCATATTTCAAGCCATGTATTATTCCTTTGGAAGGGGGTGCAGCTTCTGGATTTAAAAAACCTGAGATAGAAAATTTTGAGCCGCGCCTTTATGTATGTAAGGGCAGGCGTGTTGTAAGAGTAAAACAGGTACCTTTTGCGCGGACTTCATTGAACCACGATGATGTTTTTGTCCTTGATACTGAGTCGAAAGTGTACCAATTCAATGGGGCATCATCCAACATACAGGAAAGAGCGAAGGCCTTGGAAGTGGTGCAATATATCAAAGATGAATACCATGAAGGGAAATGTGACATTGCAATAGTTGATGATGGGAAGCTTGTAGCAGAATCTGACTCCGGAGAGTTTTGGGCTCTGTTCGGAGGTTTTGCTCCCATTGGCAAGAAGAATGGCAATGATGATGATTCTAGAATGGAATCAACTCCTGGAAAACTTTACAGCATTGTGGAAGGGGAGATAAAGATTATTGAGGGTCCCTTGTCTAAGAGTATGCTGGAGTCAAACAAATGTTATCTACTTGATTGTGGTGCCGAGGTATATGTGTGGGTTGGTCGAGTGACACAATTGGAGGAGAGAAAGTCTGCAAGTCTAATTGCAGAGGAATTCATTTCTAATCAAAAACGACCAAGGAACACACACATAACTCGAGTTATCCAGGGATTTGAGACACTGCCTTTTAGGTCAAATTTTGACTCATGGTCACTTGGCAGTGGAACTTCGGGCTCTGAGGATGGAAGAGGCAAAGTTGCTGCATTACTGAAGCAACAAGGAATCAATGTGAAGGGAATTTTGAAGGCAACTCCACTGAAAGAAGAAATTCCACCATTGCTTGAGGGAAATGGGAAACTTGAGGTTTGGAGGGTCAAGAATGTTTCTAAAGCCCCAGTTCCTAAAGAGGATATTGGCAAATTCTACAGTGGTGACTGCTATATTATACTTTATACTTACCACTCTGGAGATAGAAAAGATGATTATTTTCTTTGCTTCTGGCTAGGGAAACAGAGCACCCAGGAGGATCAAGCAGTAGCAGCTCGTTTAACAAATACAATGGCTAACTCTCTAAAAGGAAGACCTGTACAGGGACGTATTCTAGAAGGAAAAGAGCCACCTCAGTTTATTGGATTATTCCCTAACATGACCATTTTAAAGGGTGGATTAAGTGTTGGCTACAAAAAATACATTGCTGAGAAAGGCATCAATGATGAGACATACAACGGGGATGGTATTGCCCTCGTTCAAGTTTGTGGTACAGGGCCTCACAATAGCAAAGCAATTCAAGTCGATCCGGTGGCAGAGTCTTTAAATTCTTGCGACTGCTTTTTACTGCAAACTGGGACGTCACTGTTTGCTTGGCATGGAAACTCTAGTACATTGGAGCAGCAACACTCAGTTGCCAGAATTGCTGAGTTTCTTAAACCGGGTACTCTCTTGAAAGCTGTGAAGGAAGGAACAGAGCCGGCAGCATTTTGGAATGCATTGGGAGGGAAACAAAGCTATGTAACACAGAGGAAAGCGCAGGAAACAAGCAAAGATCCTCATTTGTATGCGTGCACATTTGAGAATGGCATATTGCAGGTTTCCGAAGTCTTTAACTTCACACAGGATGATTTGTTAACGGAGGATATTATGGTCTTAGATACACATACCGAGGTTTTTATTTGGGTTGGTCAGCATGCTGATACCAAAGAAAAACAGCAAGCTTTTGAGATTGGTCAGAAGTACATGGAACGTGCAGCTTTATTGGAAGGGTTATCTCCAGATACACCACTTTACAAGGTCACTGAGGGAAATGAACCGTCTTTCTTCACAAGGTTTTTTGCTTGGGATGCTACTAAAGCTGTGATCCAAGGCAATTCGTTTGAAAAAAAAATCACATCTTTTCAAGGGATACCCGTTGAAGCTGTTGAGAATCTGAAAAGGTCAATGGCATCCGATGATACTGCTCCCTTTGAAAGTACTATAGAGAGATCTGACTCCTCAAATGATGTAAGACGGGGTGGGCCAACTCAAAGAGCGGCTGCACTGGCTGCATTGTCTTCTGTTTTTGGTTCTGGCAGTGGGGATAAAGGTGCACCTAAACCTTCAAGACCATCTAGATCTATTGTGAATAAGTCCTCTCAAAGAGCAGCTGCTGTTGCAGCATTATCTGGCGTTCTGAATGTTGAGCCAAAGAGCAGTTTACCTGGAGCCCCACCTGCACCAACAACTCTGGTTGCCGATGAAAGTGCTTCCTCAGTTGATACAGTTTCAGACACATCAAAGAATGAGACAAACAGCACAACTACTGAGACTGAAGAGTTGTCACCAAAGCAAGAAGCATCTGTTACTGAAGATGGTGGAAAAGTAGAAGACAGTATTCCAGAGAATAATGGAGAAGATGTTTCTACAAAAAACGAGATTGCAGTGAAGCAAGAGGAGAATGGATGTGCTGTTACTTATAGCTATGAGCAACTGATAACTAGATCCACTAATCCTGCTGCTGGAATTGATCCCAAAAAGAGAGAGACATACTTATCATCAGAGGAGTTCCAAAGTGTTTTTGGAATGGACCGGAAGAAATTTTATGAGCAACCAAAGTGGAAGCAGGATTTGCAGAAGAAGTCTGTTGATATGTTTTAG___GGCCCGGGACCAATTGTTTGGTTGATCTACATCGTTGTAGAAAATAGTTAATGCCTTTGGCTCTACCAAAGGAGTTTAGTTATTGAATGTTGGTGGTCATTTTAACCAGTTGCTATTCATGGAAGTAATTTTTTAGCCATTTCTTATTCTTGGGAGAGTGTTCAGATTCTGGAGGTCAAAACCTAGTGATTGTGTGCGTGAATCCGTGCCAGCTGTATCGATTGTATACTAGTTAATATGCTGCTTGTGGAACATTCAAAGGGGTATTACCTCTTTAGTGTATGCCTTCCTCGTTTGTATCCAAGGCTCTATATTGCTGTTAGATAAAAGTTCTGTTTACAGCGTTATGTTTGAAAAACTCATTCTTTAAATTCTATGTAATTGTTATTTTTTTCCTGTTATCCTGCTATATTGTAATTTTTGCATTGATCTTATCAAATAAACGTTACTTCTACATAG

Fln Alignment:

Contig6006___IKTVELDAALGGRAVQYRELQGHETDKFLSYFKPCIIPLEGGAASGFKKPEIENFEPRLYVCKGRRVVRVKQVPFARTSLNHDDVFVLDTESKVYQFNGASSNIQERAKALEVVQYIKDEYHEGKCDIAIVDDGKLVAESDSGEFWALFGGFAPIGKKNGNDDDSRMESTPGKLYSIVEGEIKIIEGPLSKSMLESNKCYLLDCGAEVYVWVGRVTQLEERKSASLIAEEFISNQKRPRNTHITRVIQGFETLPFRSNFDSWSLGSGTSGSEDGRGKVAALLKQQGINVKGILKATPLKEEIPPLLEGNGKLEVWRVKNVSKAPVPKEDIGKFYSGDCYIILYTYHSGDRKDDYFLCFWLGKQSTQEDQAVAARLTNTMANSLKGRPVQGRILEGKEPPQFIGLFPNMTILKGGLSVGYKKYIAEKGINDETYNGDGIALVQVCGTGPHNSKAIQVDPVAESLNSCDCFLLQTGTSLFAWHGNSSTLEQQHSVARIAEFLKPGTLLKAVKEGT
B8LL35______________IKTVELDAALGGRAVQYRELQGHETDKFLSYFKPCIIPLEGGAASGFRKPEITKFEPRLYVCKGRRVVRVKQVPFARTSLNHDDVFVLDTESKVYQFNGASSNIQERAKSLEVVQYIKDEYHEGKCDIAVIDDGKLVAESDSGEFWALFGGFAPIGKKNGSDDDSRMESTPGKLYSIVEGEIKIVEGPLSKGMLESNKCYLLDCGAEVYVWVGRVTQLEERKSASLTAEEFISNQKRPRNTHITRVIQGFETLPFRSNFDSWSLGTGTSGSEDGRGKVAALLKQQGINVKGILKATPLKEEIPPLLEGNGKLEVWRVKNVSKAPVPKEDIGKFYSGDCYIILYTYHSGDRKEDYFLCFWLGKQSTQEDQAVAARLTNTMANSLKGRPVQGRILEGKEPPQFIGLFPNMAILKGGLSAGYKKYITEKGINDETYNGDGIALIQVCGTGPHNSKAIQVDPVAESLNSCDCFLLQTGTSLFAWHGNSSALEQQLSVARIAEFLKPGTLLKAVKEGT

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
1122	16		83		0.994512
1127	16			83	0.994512
1129	16		83		0.994512
1146			80	20	0.995493
1223	14	85			0.993533
1225	14	85			0.993533
1227	85			14	0.993533
1238			14	85	0.993533
1241	85	14			0.993533
1242	85			14	0.993533
1243	85		14		0.993533
1245	14		85		0.993533
1463		21		78	1.0
1693		87		12	0.992554
1694	87		12		0.992554
1695		87	12		0.992554
1826		15		84	0.999986
2535	66		33		0.997452
2597	75		25		0.996473
2599	75		25		0.996473
3044			92	4	0.98868
3068	89			10	0.999919

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain