SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6003

Length: 1430 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6003

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mitochondrial carrier protein, putative [Arabidopsis thaliana]	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%
Sma3	Protein brittle-1	-	-	6.501e-11	-

Source	Gene names
Sma3	AT4g32400; At3g20240; At4g32400; BT1; BT2A; BT2B; F8B4.100; GSVIVT00016874001; GSVIVT00029607001; GSVIVT00032628001; OJ1003_A09.8; Os05g0171300; Os06g0602700; Os08g0520000; Os09g0497000; OsI_18634; OsI_23612; OsI_29910; OsI_31895; OsJ_21894; OsJ_27959; Os

Source	GOs	Term	Type	Identity
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	amyloplast	GO:0009501	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid inner membrane	GO:0009528	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	nucleotide transmembrane transporter activity	GO:0015215	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	nucleotide transport	GO:0006862	Biological Process	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Endonuclease III, conserved site-2	IPR004036	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G20240.1	Mitochondrial substrate carrier family protein chr3:7057192-7058716 FORWARD LENGTH=348	58%
RefSeq	Arabidopsis thaliana	NP_188659.1	Mitochondrial substrate carrier family protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002311894.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADX1

Fln msg: your sequence is shorter than subject: 287 - 371

Fln protein: MAKTAVGPLETIRTRMIVGVGSKNIVGSFKEVMKEQGWKGLWAGNGINLLRIVPTQAIELCTFESTKRFLTSVQDHWEKNGCPRVQIVGRTLDLPVSWISPVAISGAVAGVAGTLSCYPLEVLKDRFTVHPGVYHSIGHALRKISQEEGPGALYGGLVPTIIGMVPYSTSYYFVYESTKRAYCRSCNKKSLDRVEALLIGAFGGLTSSALSFPLEVARKRLMVGILKGKQPTNMTNIIKTIIEEEGLKGLYRGWSASCLKVVPASGLSWMFYEAWKDVLLIEGSHI*

Protein Length: 288

Fln nts: CCATGGCTAAAACTGCAGTGGGTCCTTTGGAAACTATCCGGACAAGGATGATCGTAGGTGTTGGTTCAAAGAACATTGTTGGGAGTTTTAAAGAGGTGATGAAAGAACAAGGCTGGAAAGGGCTGTGGGCTGGCAATGGCATTAATCTACTTCGGATAGTTCCTACCCAAGCAATTGAGCTTTGCACATTTGAATCTACAAAACGATTTTTAACATCTGTCCAAGACCACTGGGAGAAGAATGGATGTCCCCGAGTTCAAATTGTTGGGCGGACTCTAGATTTGCCAGTATCCTGGATTTCCCCAGTTGCTATAAGTGGTGCTGTTGCAGGTGTCGCTGGCACATTGTCCTGCTATCCTTTGGAGGTCTTGAAGGACCGTTTCACTGTGCATCCTGGAGTGTATCATAGCATCGGGCACGCTCTAAGGAAAATATCACAGGAAGAAGGTCCAGGAGCTTTATATGGAGGCCTTGTACCCACTATAATTGGTATGGTTCCCTACAGTACATCTTATTATTTTGTATATGAGTCAACAAAGAGAGCATATTGCAGATCATGCAACAAGAAGTCTCTGGACCGGGTAGAAGCACTTCTTATTGGAGCCTTTGGAGGGCTTACATCCAGTGCATTAAGCTTTCCACTGGAAGTAGCTCGCAAAAGACTCATGGTTGGCATCCTAAAAGGCAAGCAGCCAACAAACATGACTAACATTATTAAAACAATCATTGAGGAGGAAGGATTGAAAGGACTTTACAGGGGTTGGAGTGCAAGTTGCCTCAAAGTTGTGCCGGCATCTGGCCTTTCTTGGATGTTTTATGAAGCATGGAAAGATGTTCTCCTAATCGAAGGGAGTCACATATAG___ATTGCAGAATATATCAGTACCTTTTGTTTGGTTCGACCCTATGGTGACGTGCAGCATAGTTTTGATCCAAGACACATTGAACCTCGATGAGAAATGTGCTAGGTTCTGATTTCATAGTTTTTAAGATCATGCTTTTTTGTTAGACCTTTTCATTAGGGATACACCTGGGAAGAGGAAATTCAAGTTTTGCTCAAAGGGAGATTGAGATCAACTATGCTAAGGGATGTATGCTAGAGTTCTTATCTTGCATTGACCTGAATATCCATTGAAAGAATCTGCGGTGGCTGGATGGATTTTAGTGGTGTTAACAATGAAAGTGTCAATGGTTCAATGGCCTTGCATGTTTGGCATCGTTGGTAGTAGAGTTGTTAATGAACTGCTGCTACCGACGATTTTTTCTCTTGAAAGTTCGAACTCTGTCTTGTTGAGCTTCTTACATACATAACATAATTGTAAATGAATCTGTGCAGATTCTATACACGTCCTTTACTTTCTGATATGATCTTTCTAGGCCATCTGGAATGAACAATGTCCATCCCAGATTTGTTTTCCTTGGCAAAATACAAG

Fln Alignment:

Contig6003___MAKTAVGPLETIRTRMIVGVGS------KNIVGSFKEVMKEQGWKGLWAGNGINLLRIVPTQAIELCTFESTKRFLTSVQDHWEKNGCPRVQIVGRTLDLPVSWISPXXXXXXXXXXXXTLSCYPLEVLKDRFTVH----PGVYHSIGHALRKISQEEGPGALYGGLVPTIIGMVPYSTSYYFVYESTKRAYCRS-----CNKKSLDRVEALLIGAFGGLTSSALSFPLEVARKRL-MVG------ILKGK-------QPTNMTNIIKTIIEEEGLKGLYRGWSASCLKVVPASGLSWMFYEAWKDVLLIE
D5ADX1______________VSRSAVAPLE--RLKILLQVQNPLHRKYNGTIQGLRYIWNTEGLRGLFKGNGTNCARIVPNSAVKFYSYEQASRAI--LWFYRQQTGNEDAELT------PVLRLGAGACAGIIAMS----ATYPMDMVRGRLTVQTENSPYQYRGMFHALSTVLREEGPRALYKGWFPSVIGVVPYVGLNFAVYESLKDWLVKSRPFGLVEGEDLSMVTKLACGAAAGTVGQTVAYPLDVIRRRMQMVGWKDASSIVTGDGRSKAPLQYSGMVDAFRQTVRNEGFGALYRGLVPNSVKVVPSIAIAFVTYEALRDLLNVE

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
558		80	20		0.995493
559	80		20		0.995493
1047	88			11	0.923564
1061			88	11	0.923564
1069		10	90		0.90298
1313	20			80	0.995493
1314	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain