SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5976

Length: 1780 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5976

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Diacylglycerol kinase, alpha, putative n=1 Tax=Ricinus communis RepID=B9T0H8_RICCO	-	-	0.0	58%
FL-Next	tr=Diacylglycerol kinase, alpha, putative; Ricinus communis (Castor bean).	-	-	0.0	59%
Sma3	Diacylglycerol kinase	-	-	9.879e-11	-

Source	Gene names
Sma3	AT4g30340; At2g18730; At4g30340; At5g57690; DGK7; GSVIVT00011281001; GSVIVT00031471001; OSJNBa0012K14.16; OSJNBa0054K20.17; OSJNBb0003H03.38; Os02g0787800; Os08g0249600; OsI_09221; OsI_28449; OsI_28450; OsI_28452; OsI_28453; OsJ_08661; OsJ_26615; PHYPADRA

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	diacylglycerol kinase activity	GO:0004143	Molecular Function	-
Sma3	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease P	IPR000100	-	-
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Diacylglycerol kinase, plant	IPR016961	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G30340.1	ATDGK7, DGK7 diacylglycerol kinase 7 chr4:14838465-14840941 REVERSE LENGTH=492	56%
RefSeq	Arabidopsis thaliana	NP_567845.4	diacylglycerol kinase 7 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002325082.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9T0H8

Fln msg:

Fln protein: MEESQAGASASSHVNGKQNAKLAHTAVKSTLMEPPGGLCLQGRSINTEELRRHTVIPEYLRNAMADAVRSKGFVYEERRHKGTGEECSPEAPVVVFINSKSGGRLGPKLRNQLQDLISQEQVFDLSVVKPEEFFQYGLHCLEELASNGDLCAQETRDRIRVLVAGGDGTVAWVLGSISGLQLEKCKQIPPVGIIPLGTGNDLARSFGWGGTFSFAWRSEVKKYLLKAVNSRVCPLDSWHVVVKITDGQKVDFPHALKPQKQSLVTQDGELDRKSHGNVSSFDGVFYNYFSIGMDAQVAYGFHHLRKKRPYLARGPISNKMVYSVYSCTQGWFCTSCSNNPQLSGINNILRLYIRRRNGSAWEEIAIPSSVRAIVALNLQNYASGRNPWGHPNPKYLEKKGFVQAQADDGLIEIFGLKNGWHTSFVMADLITAKHLSQAVDLKLELGGSQRKQAYMQMDGEPWKQPLSNIHSTVIEIARAPYQSLILNANSNK*

Protein Length: 494

Fln nts: TACTTATGGGGAGACAATCTATGCCGAAGAGCCTTGACATTCCGTTCACCTTTATGCAGTGTCCTTTCTCACACTAACCATACGTTGATCCTCTGAAACGCCGCTATAGGGTTGTTAGTGCC_-_ATGGAAGAATCACAGGCAGGAGCTTCTGCTTCTTCGCATGTTAACGGCAAGCAAAATGCCAAGCTCGCCCACACGGCTGTCAAATCTACCTTAATGGAGCCTCCCGGAGGTCTTTGTCTGCAGGGGCGGAGCATAAACACAGAAGAATTACGGAGGCACACTGTGATTCCTGAGTATTTGAGAAATGCCATGGCCGATGCCGTTCGCTCAAAAGGATTTGTGTACGAAGAACGGCGTCATAAAGGGACTGGAGAAGAATGTTCACCGGAGGCTCCGGTTGTAGTCTTTATCAATTCAAAGAGTGGCGGTAGACTGGGACCAAAGCTTAGGAATCAGCTTCAGGATCTAATCAGCCAAGAACAGGTCTTTGACCTTTCAGTTGTTAAACCTGAAGAATTTTTTCAGTATGGTCTACATTGCTTGGAAGAACTGGCAAGCAATGGTGACCTTTGTGCACAGGAAACTCGTGATAGAATACGTGTTTTGGTAGCAGGAGGTGATGGTACTGTTGCATGGGTGCTAGGAAGTATATCTGGTCTTCAATTGGAAAAGTGTAAACAAATACCACCGGTGGGAATTATTCCTCTTGGCACAGGCAATGATTTGGCCAGATCTTTTGGCTGGGGTGGAACATTCTCTTTTGCATGGAGATCAGAAGTTAAGAAATATTTGCTCAAGGCTGTCAATAGTCGAGTATGTCCACTTGACAGTTGGCATGTTGTGGTGAAAATCACAGATGGACAAAAAGTAGATTTTCCTCATGCGTTGAAGCCCCAAAAGCAATCATTAGTAACTCAGGATGGGGAACTAGACCGCAAATCACATGGCAATGTTTCTTCTTTTGATGGTGTATTTTATAACTACTTCAGCATAGGCATGGATGCTCAAGTTGCATATGGATTTCATCATCTACGTAAGAAGAGACCATATCTTGCTCGGGGACCGATTTCAAATAAAATGGTCTACTCTGTCTACAGTTGCACTCAAGGGTGGTTCTGCACTTCTTGTTCAAATAATCCACAACTAAGTGGAATTAATAATATTTTACGACTTTACATTAGAAGGAGAAATGGATCTGCATGGGAAGAAATTGCTATTCCATCAAGTGTGCGGGCAATTGTTGCTTTGAATCTTCAGAATTATGCAAGTGGGCGAAATCCATGGGGACATCCAAACCCAAAGTACCTTGAAAAGAAAGGATTTGTACAGGCCCAGGCCGATGATGGATTGATTGAAATCTTTGGATTGAAGAATGGGTGGCATACATCCTTTGTCATGGCAGACCTTATTACAGCAAAGCACCTTTCACAGGCTGTAGATCTAAAGTTGGAATTGGGAGGGTCTCAGAGGAAGCAAGCCTATATGCAAATGGATGGTGAGCCTTGGAAACAACCACTAAGCAACATCCATTCAACAGTAATTGAGATTGCAAGAGCTCCTTATCAATCACTTATTCTTAATGCAAACTCAAATAAATAG___GCGGTTGTCCTTCAAATATATTATGAAATTATAACTATTTAACTGAATGGTATCCAAAGCATGCAGCCTTTTGCTTCTGCATATTGGATTACATCATTGCTTTGTGTTACTTATTCAAAATCAGCTTCTTGTTGATTTCATGTCTTTATCAAAAGAGTTGTTAGTTTTCAAATCAATCG

Fln Alignment:

Contig5976___KSTLMEPPGGLCLQGRSINTEELRRHTVIPEYLRNAMADAVRSKGFVYEERRH-KGTGE------ECSPEAPVVVFINSKSGGRLGPKLRNQLQDLISQEQVFDLSVVKPEEFFQYGLHCLEELASNGDLCAQETRDRIRVLVAGGDGTVAWVLGSISGLQLEKCKQIPPVGIIPLGTGNDLARSFGWGGTFSFAWRSEVKKYLLKAVNSRVCPLDSWHVVVKITDGQKVDFPHALKPQKQSLVTQDGELDRKSHGNVSSFDGVFYNYFSIGMDAQVAYGFHHLRKKRPYLARGPISNKMVYSVYSCTQGWFCTSCSNNPQLSGXXXXXXXXXXXXXGSAWEEIAIPSSVRAIVALNLQNYASGRNPWGHPNPKYLEKKGFVQAQADDGLIEIFGLKNGWHTSFVMADLITAKHLSQAVDLKLELGGSQRKQAYMQMDGEPWKQPLSNIHSTVIEIARAPYQSLILN
B9T0H8______________RSSMIESIRGCGLSGVRIDREELKRKLLIPEYLRHAIRDSIKSKDPAGEADRYFNKTGELYAPREQDAPEGPLVVFVNSKSGGRHGPELKLRLQQLMGEEQVFDLSVVKPHEFVDYGLVCLEKMAALGDPCARETREKIRIVVAGGDGTVGWVLGSLAALNQQGREPIPPVGIIPLGTGNDLARSFGWGGSFPFAWKSAVKRSLQRAITGQVCHLDSWHLLVSMPCGEVVDPPHSLKTTEECSLDQGLEVEGQLPEKVNCYDGVFYNYFSIGMDAQVAYGFHHLRNDKPYLAQGPISNKLIYSGYSCTQGWFLTPCISDPRLRGLKNILRMHVKKVNCSEWEQIPVPKSVRAIVALNLHNYGSGRNPWGTPKPEYLEKKGFVQAHADDGLLEIFGLKQGWHASFVMVELISAKHIAQAAAIRLEIRGGEWKDAYMQMDGEPWKQPMSKEYSSFVEIKRVPHRSFMIN

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
280		15	84		0.999986
470		42		57	1.0
591	33		66		1.0
681	80	20			0.995493
683		80		20	0.995493
684	80			20	0.995493
688	75		25		0.996473
740	11			88	0.923564
760	11	88			0.923564
761		11		88	0.923564
762	11	88			0.923564
860			90	10	0.90298
861	90			10	0.90298
863	22		77		0.999999
939			80	20	0.999996
1013			88	11	0.923564
1014			11	88	0.923564
1033	12			87	0.992554
1159	12			87	0.992554
1160	87	12			0.992554
1163	85			14	0.993533
1445		12	87		0.992554
1474			14	85	0.993533
1513	90		9		0.999872
1558	88	11			0.999937
1627	40			40	1.0
1631	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain