SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5975

Length: 1994 nt

UniGene Fasta

>sp_v3.0_unigene5975
AGACAACCTTAAAACAACAATACTAGCACTGGACTCGAAGCTGTAAATCGAACTGAATTGAAGATATGGAGGAAGCATACAGAGAAGTCCTCCTCCAAGCAGCCTCTCTTTTTCCTCCACCACCAGGCATCAGGTTTGCTTATGGGACAGCAGGGTTTCGATACAATGGATTGCTTTTGTCGTCGACCATATTCAGGGTTGGTGTTTTGGCTGCTCTGAGGTCATTGAAAACTGGATCTGTTACTGGATTAATGATCACAGCCTCACATAATCCAGAATCTGACAATGGTGTGAAGGTGGCAGATCCAGGAGGTGGCATTTTGACCCAGGAATGGGAGCCCTTTGCGGATGCCATCGCAAATGCTGTCAATGCAGAGAATTTTGTACAGCTGATTGACGAGTTCATCAAAAAGCAAGGCATCTTATGTGGGAACGCATATTCTGGGGTGGTACTTGTGGCAAGAGACACAAGACCTAGTGGAGAAGAGCTACTGAGTGCTGCTATTCAAGGCATTGGGGCTGTAAAAGGAGTGATGGCAGTTGACATGGGTATCTTGACTACTCCACAACTTCACTGGATGGTCCGTAGTAGAAACAAAGGCATGCCAGCAACAGAATCTGATTATTATGTGCAGCTTTCAAGTTCAGTCAAGATTCTTATGGAAACAAGCCCTAAAGTGCAGAAGGTGGGACCCCATATTGAAGGAGTGGTGGTAGATGGAGCAAATGGAGTAGGTGCAAAAAAGTTGTATACATTACAGCAATTTTTGGAGGGTATTGAAGTGAATATCAGGAACTCTGGCAGGGAAGGTGAGGGAGGGCTCAATGATAGTGTTGGGGCTGACTTTGTGCAGAAGGAGAAGATCACTCCCAGTGGATTTGGAGGGGATGATGTTGGAAAAAGGTGTGCAAGCTTGGATGGTGATGCAGACAGACTAGTTTATTTCTATATCTCCTCCCCAGAGAAAAAGGCTGTTGAGCTAATTGATGGTGATAAAATCTTGACTCTTTTTGCTATTTTCATCAAGCAGCAGTTAGATTCTATATATAACCAAGAAAAGATGGAAAGTTCACCAGCAGTAAGATTAGCTCAGAATCCTTCCAATGAAGAGTGCCATTCCGTTAAACTGGGCATTGTACAGACTGCTTATGCTAATGGAGCTTCAACAAGGTACTTGAGGGAGCTTGGTTTGGAAGTTGTGTTCACTTCCACTGGAGTGAAGTACTTACATGAGAAGGCTACTGAATATGATATTGGTATCTACTTTGAAGCAAATGGACATGGCACTATTTTGTTTTCTGAGAAATTGTTACTATGGTTGAATGCATTCAATGAAGAGCTTTCTTCTGCATCAACAGTCTCAGAGCAGAGGAGGGCTGTTCAAAGATTGCTGGCCATCAGTAGTTTGATCAATCAAGCTGTTGGGGATGCGTTGAGTGGCTTGTTGTTGGTAGAGGTAATTCTTCACTATATGGGATGGTCCATTCAAACATGGAATACACTATATCAGGACCTTCCGAGCAGACAATTGAAGGTCAAAGTTGCAGACAGAACATCTATAGTCACTACTGATGCAGAAACTAGGGTTGTAAGGCCCTTGGGACTTCAGGAAGCAATTGATTCAGAAGTTGTAAAATATTCTATGGGACGGGCATTTGTTCGACCTTCTGGTACAGAGGATGTGGTTCGTGTGTATGCTGAGGCCCTGACGCAGGAAGAAGCAGACAGTTTGGGTCAAGCAATTGCTATGCATGTGCGCCAATTTGTAGGACTTGAGAGCTCTATGTGATGGATTAATGTCTTGTTAGTGTATGCATGCATGTGAAGAAGTTCAAATTTATGAAAATATTGAAGTCTCCAACTCCTTTACGAAGTCTTTTTGGATTACCTTCCTCACTATATTCCCATATTCTTGGGAACAGAGAGGTATAGCTTATGGAATTCATAACTCATCAAGGTTTTCACTGAATGCAAATTCATCCTGTTTCAGAAC

Ace file of the UniGene sp_v3.0_unigene5975

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phosphoglucosamine mutase [Carica papaya]	-	-	0.0	57%
FL-Next	sp=Phosphoacetylglucosamine mutase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%
Sma3	Phosphoacetylglucosamine mutase	-	-	4.755e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoacetylglucosamine mutase.	EC:5.4.2.3	-	3.244e-13	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Amino sugar and nucleotide sugar metabolism	00520		3.244e-13	%

Source	Gene names
Sma3	At5g18070; CHLREDRAFT_130104; DRT101; GSVIVT00001611001; GSVIVT00015819001; LOC_Os07g09720; MICPUN_104371; MRG7.2; OJ1715_A07.21; OSTLU_40572; Os07g0195400; OsI_25249; Ot16g01380; P0589E08.4; PHATRDRAFT_51225; PHYPADRAFT_221293; POPTRDRAFT_589964; RCOM_05

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	phosphoacetylglucosamine mutase activity	GO:0004610	Molecular Function	-
Sma3	intramolecular transferase activity, phosphotransferases	GO:0016868	Molecular Function	-
Sma3	photoreactive repair	GO:0000719	Biological Process	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	response to UV	GO:0009411	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alpha-D-phosphohexomutase, C-terminal	IPR005843	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha domain I	IPR005844	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha domain II	IPR005845	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	IPR016055	-	-
Sma3	Alpha-D-phosphohexomutase, conserved site	IPR016066	-	-
Sma3	Phosphoacetylglucosamine mutase	IPR016657	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G18070.1	DRT101 phosphoglucosamine mutase-related chr5:5981117-5982787 FORWARD LENGTH=556	58%
RefSeq	Arabidopsis thaliana	NP_568359.2	phosphoacetylglucosamine mutase [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002326704.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P57750

Fln msg:

Fln protein: MEEAYREVLLQAASLFPPPPGIRFAYGTAGFRYNGLLLSSTIFRVGVLAALRSLKTGSVTGLMITASHNPESDNGVKVADPGGGILTQEWEPFADAIANAVNAENFVQLIDEFIKKQGILCGNAYSGVVLVARDTRPSGEELLSAAIQGIGAVKGVMAVDMGILTTPQLHWMVRSRNKGMPATESDYYVQLSSSVKILMETSPKVQKVGPHIEGVVVDGANGVGAKKLYTLQQFLEGIEVNIRNSGREGEGGLNDSVGADFVQKEKITPSGFGGDDVGKRCASLDGDADRLVYFYISSPEKKAVELIDGDKILTLFAIFIKQQLDSIYNQEKMESSPAVRLAQNPSNEECHSVKLGIVQTAYANGASTRYLRELGLEVVFTSTGVKYLHEKATEYDIGIYFEANGHGTILFSEKLLLWLNAFNEELSSASTVSEQRRAVQRLLAISSLINQAVGDALSGLLLVEVILHYMGWSIQTWNTLYQDLPSRQLKVKVADRTSIVTTDAETRVVRPLGLQEAIDSEVVKYSMGRAFVRPSGTEDVVRVYAEALTQEEADSLGQAIAMHVRQFVGLESSM*

Protein Length: 576

Fln nts: AGACAACCTTAAAACAACAATACTAGCACTGGACTCGAAGCTGTAAATCGAACTGAATTGAAGAT_-_ATGGAGGAAGCATACAGAGAAGTCCTCCTCCAAGCAGCCTCTCTTTTTCCTCCACCACCAGGCATCAGGTTTGCTTATGGGACAGCAGGGTTTCGATACAATGGATTGCTTTTGTCGTCGACCATATTCAGGGTTGGTGTTTTGGCTGCTCTGAGGTCATTGAAAACTGGATCTGTTACTGGATTAATGATCACAGCCTCACATAATCCAGAATCTGACAATGGTGTGAAGGTGGCAGATCCAGGAGGTGGCATTTTGACCCAGGAATGGGAGCCCTTTGCGGATGCCATCGCAAATGCTGTCAATGCAGAGAATTTTGTACAGCTGATTGACGAGTTCATCAAAAAGCAAGGCATCTTATGTGGGAACGCATATTCTGGGGTGGTACTTGTGGCAAGAGACACAAGACCTAGTGGAGAAGAGCTACTGAGTGCTGCTATTCAAGGCATTGGGGCTGTAAAAGGAGTGATGGCAGTTGACATGGGTATCTTGACTACTCCACAACTTCACTGGATGGTCCGTAGTAGAAACAAAGGCATGCCAGCAACAGAATCTGATTATTATGTGCAGCTTTCAAGTTCAGTCAAGATTCTTATGGAAACAAGCCCTAAAGTGCAGAAGGTGGGACCCCATATTGAAGGAGTGGTGGTAGATGGAGCAAATGGAGTAGGTGCAAAAAAGTTGTATACATTACAGCAATTTTTGGAGGGTATTGAAGTGAATATCAGGAACTCTGGCAGGGAAGGTGAGGGAGGGCTCAATGATAGTGTTGGGGCTGACTTTGTGCAGAAGGAGAAGATCACTCCCAGTGGATTTGGAGGGGATGATGTTGGAAAAAGGTGTGCAAGCTTGGATGGTGATGCAGACAGACTAGTTTATTTCTATATCTCCTCCCCAGAGAAAAAGGCTGTTGAGCTAATTGATGGTGATAAAATCTTGACTCTTTTTGCTATTTTCATCAAGCAGCAGTTAGATTCTATATATAACCAAGAAAAGATGGAAAGTTCACCAGCAGTAAGATTAGCTCAGAATCCTTCCAATGAAGAGTGCCATTCCGTTAAACTGGGCATTGTACAGACTGCTTATGCTAATGGAGCTTCAACAAGGTACTTGAGGGAGCTTGGTTTGGAAGTTGTGTTCACTTCCACTGGAGTGAAGTACTTACATGAGAAGGCTACTGAATATGATATTGGTATCTACTTTGAAGCAAATGGACATGGCACTATTTTGTTTTCTGAGAAATTGTTACTATGGTTGAATGCATTCAATGAAGAGCTTTCTTCTGCATCAACAGTCTCAGAGCAGAGGAGGGCTGTTCAAAGATTGCTGGCCATCAGTAGTTTGATCAATCAAGCTGTTGGGGATGCGTTGAGTGGCTTGTTGTTGGTAGAGGTAATTCTTCACTATATGGGATGGTCCATTCAAACATGGAATACACTATATCAGGACCTTCCGAGCAGACAATTGAAGGTCAAAGTTGCAGACAGAACATCTATAGTCACTACTGATGCAGAAACTAGGGTTGTAAGGCCCTTGGGACTTCAGGAAGCAATTGATTCAGAAGTTGTAAAATATTCTATGGGACGGGCATTTGTTCGACCTTCTGGTACAGAGGATGTGGTTCGTGTGTATGCTGAGGCCCTGACGCAGGAAGAAGCAGACAGTTTGGGTCAAGCAATTGCTATGCATGTGCGCCAATTTGTAGGACTTGAGAGCTCTATGTGA___TGGATTAATGTCTTGTTAGTGTATGCATGCATGTGAAGAAGTTCAAATTTATGAAAATATTGAAGTCTCCAACTCCTTTACGAAGTCTTTTTGGATTACCTTCCTCACTATATTCCCATATTCTTGGGAACAGAGAGGTATAGCTTATGGAATTCATAACTCATCAAGGTTTTCACTGAATGCAAATTCATCCTGTTTCAGAAC

Fln Alignment:

Contig5975___MEEAYREVLLQAASLFPPPPGIRFAYGTAGFRYNGLLLSSTIFRVGVLAALRSLKTGSVT-GLMITASHNPESDNGVKVADPGGGILTQEWEPFADAIANAVNAENFVQLIDEFIKKQGILCGNAYSGV-VLVARDTRPSGEELLSAAIQGIGAVKGVMAVDMGILTTPQLHWMVRSRNKGMPATESDYYVQLSSSVKILMETSPKVQKVGPHIEXXXXXXXXXXXXKKLYTLQQFLEGIEVNIRNSGREGEGGLNDSVGADFVQKEKITPSGFGGDDVGKRCASLDGDADRLVYFYISSPEKKAVELIDGDKILTLFAIFIKQQLDSIYNQEKMESSPAVRLAQNPSNEECHSVKLGIVQTAYANGASTRYLRELGLEVVFTSTGVKYLHEKATEYDIGIYFEANGHGTILFSEKLLLWLNAFNEELSSASTV-SEQRRAVQRLLAISSLINQAVGDALSGLLLVEVILHYMGWSIQTWNTLYQDLPSRQLKVKVADRTSIVTTDAETRVVRPLGLQEAIDSEVVKYSMGRAFVRPSGTEDVVRVYAEALTQEEADSLGQAIAMHVRQFVG
P57750______________MDEIQIASILKSSELFPIPQGVKLSYGTAGFRGDAKLLESTVYRVGILSALRSLKLGSATVGLMITASHNKVSDNGIKVSDPSGFMLSQEWEPFADQIANASSPEELVSLIRKFMEKEEIAIGENNKGAEVWLGRDTRPSGESLLRAGEIGVGSILGSVAIDIGILTTPQLHWMVRAKNKGLKATENDYFENLSTSFRCLIDLIPSSGNDKLEISKLLVDGANGVGGQKIEKLRGSLSNLDVEIRNTGRDG-GVLNEGVGADFVQKEKVLPVGFGFKDVGMRCASLDGDADRLVYFYIPSDSSEKVELLDGDKILSLFALFIKEQLNALEDDEERKQS-----------------RLGVVQTAYANGASTDYLKHLGLDVVFAKTGVKHLHEKAAEFDIGIYFEANGHGTILFSESFLSWLVSKQKDLTAKGQGGSEEHKAVSRLMAVSNLINQAVGDALSGVLLVEVILQHLGWSIEKWNELYKDLPSRQIKVEVPDRTAVVTTSEETEALRPMGIQDAINSEIKKYSRGRAFIRPSGTEDVVRVYAEASTQEDADSLANSVAQLVKSFLG

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
401		25		75	0.996473
625	11		88		0.923564
862		11	88		0.923564
863	88			11	0.923564
1235	80		20		0.995493
1237	20		80		0.995493
1238	80		20		0.995493
1243		20	80		0.995493
1260			12	87	0.992554
1272	12			87	0.992554
1273		12	87		0.992554
1275	87			12	0.992554
1276			87	12	0.992554
1846		16		83	0.994512
1847	16		83		0.994512
1848	83			16	0.994512
1849	83			16	0.994512
1989			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain