SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5974

Length: 2483 nt

UniGene Fasta

>sp_v3.0_unigene5974
GAATCCCTAGTGCTCAGTGCCCACCACTTCCTCCTCAACGCGGTTCCTTACTTGCTTCACTTTCAGAACAGCCCTCTGCTTTTATGCAGGAAAGCTCTACAGAAACTTCGTTCCGCCTTCAATTATTTGGTCGGCCACAGAATTGGGGCGAAAATGTCACCTTTGTCGCAGCTCGAGTGCAGATTGTTTATTATCATAAGTGCCATTCTCAGTCTGATTTGCACTGTTGAGAATGCTGGGCCGCATTGCGCCGAACCAGACCTGCAGGCGCTGCTGCACTTCAAGGCAGGGATTGTCGATGACACCTCAGGGCGCCTGCGGTCATGGAACGGCTCCAACTGCTGCCGGTGGCAGGGGGTATCCTGCAATAGACAAACAGGGCGTGTAATGGGGCTTATGCTGCCGGGGCTGCTGTCCGGGAGCGACTTCATATCGGATACCCAGATGAAGGGCACGCTGTCGGAGTCCTTGGGAGATCTCCAGTTTCTTGAAATTTTGGAAATGGGGGCCTTGAAACAAATCACTGGCTCTATTCCCTTGTCATTTGGGAGGCTCAGGAGGCTGAAGAAGCTGCGCCTCAACGCCAATAAGCTGGGCGGTTCGGTCCCTCCATTTTTGGCATACCTTCACAATCTTCAAGAATTGGATCTGTCTGAGAATGGTCTGAGAGGAACTTTACCGGTGAGTCTCGGAGGCCTAAGGAATCTGCGCGTTTTGAATCTGTATACCAACAGGTTGGCAGGCCCTGTTCCTGAATCAATAGCCCGTCTTTCCAAGCTCACTATTCTTGATCTCCACGGCAACCTTCTCGGAGGCCCCATTCCTCGGTCTGTGGGAGAATTGCGTTCTCTGCAGTCGTTGGATATGTCTGAGAATCGGCTTACAGGAACCATACCGTATTCTATAGCGTATGTTATCGAATCTGTCAATCCTGTACCTCAATAACAACAATCTCAGCGGCAACATCCCCCATTCCATAGGAAAGGTCACGACTCTGGGATTTCTTCGTCTTCAGGAAAATAAATTGAGCGGGATTCTTCCAGCTTCTTTCGGAGGTCTGGTCAATTTGCAGAGACTTTCAGTGGCCAATAATATGATAGGCGGCCCCATTCCTGCTTCGTGGGGTAAGCTATCGAACCTGAAGGATCTCTACCTCAATAATAATAGATTATCAGGTTCGATTCCCAACTCTATAGTGAAAAATTTCTAATCTTATGTTTCTGTATCTCTCTTATAACAATCTTTCCGGGAGCCTTCCGTGGGAATTATCAGAGATTTCTGATCTGCAAGTCTTGGATATTTCATTCAATAATTTCAAGTTTGTGAATATTCCCAGAGTACTATTTGAGCTCCCTGGACTGTATCAGCTCTCCCTTGCTGGTTGCGGCATAGAGGGAAGAATTCCCGAGTCATTGTCCAAAACGCCGGGGCCTCTTTCTCTGCTTGACCTTTCCAGCAACAGCCTCAGCGGCACCATACCACCATGGCTGGGCAACATGACGCAATTAGATACTCTCAACTTGTCAAGAAACGCATTGACATCCACCATTCCAGAGGAAATTCGCAACCTGCAAGACCTCACCATTCTGGACCTCCATTCAAACCACCTCACCGGGCCTATAGCATCCCTTTTTGCCATCAGCAGCCCCTTTCCTGACGGAAATTTAAGAACCTTGGACTTGTCCGGCAACAGATTCACTGGTTCAATACCTCCTAATGCAGGCGATCAGAACAGCATGGAACAGCTTTTTCTGTCGCACAATTCTCTCAGCGGACAAATCCCCTCTTCAATTGGCATGATGAAACAATTGAAGGCCTTGGATCTCGGCTGCAATGCACTGTACGGTTCCATACCCAGTACGCTGGGCAGTTTGGCACAGTTAAAGATTCTGAAGCTGAATGAGAATCGCTTGAGTGGAGGAATCCCCAATGAGTTTCTGAATCTCACGTCTCTATTGGAACTGAACTTGTCTCATAATTCTCTGTCGGGAAGAATTCCGCATGGGATCCCGCTTCGAAAGTTTCCGATATCCTCCTACACCGATAACAACGGACTCTGCGGAGATCCTCTTCCTCCATGTTCTTCCAGAGCTCAAGATTCGAACCCTTGAAAGTTTGTTGGACTATTTTGGTTTTCGTGTTATCGGCGAGCTCCCAGTGCCCACTGCACATGTCTCCTGTCGCATCACCTGTGAACAATTCTTTTCATGGATGATAGAAGAGAGTAATGAAAATCCAAATCTTCTCTGCCATTGTTCTGGTATGTAGTATACTAAGCTTGCGGTCATAGCAAAGTACGACTTAAATGCAAATCATATATTGAGAACTAGGCTTCCCATTATGAAGATAAGAAGAAGCTTACTGTTATTCTTGTATCTGTAAAGTTTCAATAATGTGTTAATAAACTGTGTAGTACCGCACAAAATTTCAGAGTATGCAGGGTTCTAAATTTAAATTTATCATTCCCTGTGTGGAGTTCTTCC

Ace file of the UniGene sp_v3.0_unigene5974

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9S2F4_RICCO	-	-	0.0	44%
FL-Next	tr=Serine-threonine protein kinase, plant-type, putative; Ricinus communis (Castor bean).	-	-	0.0	48%

Source	Gene names
Sma3	Cf-5; GSVIVT00028947001; GSVIVT00036843001; Hcr2-0B; POPTRDRAFT_566083; POPTRDRAFT_655398; POPTRDRAFT_679185; RCOM_0699180; RCOM_0778930; VITISV_015032; VITISV_043683;

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	LRAT-like domain	IPR007053	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002314624.1	predicted protein [Populus trichocarpa]	0.0	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9S2F4

Fln msg: warning!, putative chimeric sequence! or repetitive structure and possible frame ERROR between 1195 and 1257,

Fln protein: MSPLSQLECRLFIIISAILSLICTVENAGPHCAEPDLQALLHFKAGIVDDTSGRLRSWNGSNCCRWQGVSCNRQTGRVMGLMLPGLLSGSDFISDTQMKGTLSESLGDLQFLEILEMGALKQITGSIPLSFGRLRRLKKLRLNANKLGGSVPPFLAYLHNLQELDLSENGLRGTLPVSLGGLRNLRVLNLYTNRLAGPVPESIARLSKLTILDLHGNLLGGPIPRSVGELRSLQSLDMSENRLTGTIPYSxxxxxxxxxxxxxxxxxxxGNIPHSIGKVTTLGFLRLQENKLSGILPASFGGLVNLQRLSVANNMIGGPIPASWGKLSNLKDLYLNNNRLSGSIPNSxxxxxxxxxxxxxxxxxxxxxLPWELSEISDLQVLDISFNNFKFVNIPRVLFELPGLYQLSLAGCGIEGRIPESLSKTPGPLSLLDLSSNSLSGTIPPWLGNMTQLDTLNLSRNALTSTIPEEIRNLQDLTILDLHSNHLTGPIASLFAISSPFPDGNLRTLDLSGNRFTGSIPPNAGDQNSMEQLFLSHNSLSGQIPSSIGMMKQLKALDLGCNALYGSIPSTLGSLAQLKILKLNENRLSGGIPNEFLNLTSLLELNLSHNSLSGRIPHGIPLRKFPISSYTDNNGLCGDPLPPCSSRAQDSNP*

Protein Length: 655

Fln nts: GAATCCCTAGTGCTCAGTGCCCACCACTTCCTCCTCAACGCGGTTCCTTACTTGCTTCACTTTCAGAACAGCCCTCTGCTTTTATGCAGGAAAGCTCTACAGAAACTTCGTTCCGCCTTCAATTATTTGGTCGGCCACAGAATTGGGGCGAAA_-_ATGTCACCTTTGTCGCAGCTCGAGTGCAGATTGTTTATTATCATAAGTGCCATTCTCAGTCTGATTTGCACTGTTGAGAATGCTGGGCCGCATTGCGCCGAACCAGACCTGCAGGCGCTGCTGCACTTCAAGGCAGGGATTGTCGATGACACCTCAGGGCGCCTGCGGTCATGGAACGGCTCCAACTGCTGCCGGTGGCAGGGGGTATCCTGCAATAGACAAACAGGGCGTGTAATGGGGCTTATGCTGCCGGGGCTGCTGTCCGGGAGCGACTTCATATCGGATACCCAGATGAAGGGCACGCTGTCGGAGTCCTTGGGAGATCTCCAGTTTCTTGAAATTTTGGAAATGGGGGCCTTGAAACAAATCACTGGCTCTATTCCCTTGTCATTTGGGAGGCTCAGGAGGCTGAAGAAGCTGCGCCTCAACGCCAATAAGCTGGGCGGTTCGGTCCCTCCATTTTTGGCATACCTTCACAATCTTCAAGAATTGGATCTGTCTGAGAATGGTCTGAGAGGAACTTTACCGGTGAGTCTCGGAGGCCTAAGGAATCTGCGCGTTTTGAATCTGTATACCAACAGGTTGGCAGGCCCTGTTCCTGAATCAATAGCCCGTCTTTCCAAGCTCACTATTCTTGATCTCCACGGCAACCTTCTCGGAGGCCCCATTCCTCGGTCTGTGGGAGAATTGCGTTCTCTGCAGTCGTTGGATATGTCTGAGAATCGGCTTACAGGAACCATACCGTATTCTATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCGGCAACATCCCCCATTCCATAGGAAAGGTCACGACTCTGGGATTTCTTCGTCTTCAGGAAAATAAATTGAGCGGGATTCTTCCAGCTTCTTTCGGAGGTCTGGTCAATTTGCAGAGACTTTCAGTGGCCAATAATATGATAGGCGGCCCCATTCCTGCTTCGTGGGGTAAGCTATCGAACCTGAAGGATCTCTACCTCAATAATAATAGATTATCAGGTTCGATTCCCAACTCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTTCCGTGGGAATTATCAGAGATTTCTGATCTGCAAGTCTTGGATATTTCATTCAATAATTTCAAGTTTGTGAATATTCCCAGAGTACTATTTGAGCTCCCTGGACTGTATCAGCTCTCCCTTGCTGGTTGCGGCATAGAGGGAAGAATTCCCGAGTCATTGTCCAAAACGCCGGGGCCTCTTTCTCTGCTTGACCTTTCCAGCAACAGCCTCAGCGGCACCATACCACCATGGCTGGGCAACATGACGCAATTAGATACTCTCAACTTGTCAAGAAACGCATTGACATCCACCATTCCAGAGGAAATTCGCAACCTGCAAGACCTCACCATTCTGGACCTCCATTCAAACCACCTCACCGGGCCTATAGCATCCCTTTTTGCCATCAGCAGCCCCTTTCCTGACGGAAATTTAAGAACCTTGGACTTGTCCGGCAACAGATTCACTGGTTCAATACCTCCTAATGCAGGCGATCAGAACAGCATGGAACAGCTTTTTCTGTCGCACAATTCTCTCAGCGGACAAATCCCCTCTTCAATTGGCATGATGAAACAATTGAAGGCCTTGGATCTCGGCTGCAATGCACTGTACGGTTCCATACCCAGTACGCTGGGCAGTTTGGCACAGTTAAAGATTCTGAAGCTGAATGAGAATCGCTTGAGTGGAGGAATCCCCAATGAGTTTCTGAATCTCACGTCTCTATTGGAACTGAACTTGTCTCATAATTCTCTGTCGGGAAGAATTCCGCATGGGATCCCGCTTCGAAAGTTTCCGATATCCTCCTACACCGATAACAACGGACTCTGCGGAGATCCTCTTCCTCCATGTTCTTCCAGAGCTCAAGATTCGAACCCTTGA___AAGTTTGTTGGACTATTTTGGTTTTCGTGTTATCGGCGAGCTCCCAGTGCCCACTGCACATGTCTCCTGTCGCATCACCTGTGAACAATTCTTTTCATGGATGATAGAAGAGAGTAATGAAAATCCAAATCTTCTCTGCCATTGTTCTGGTATGTAGTATACTAAGCTTGCGGTCATAGCAAAGTACGACTTAAATGCAAATCATATATTGAGAACTAGGCTTCCCATTATGAAGATAAGAAGAAGCTTACTGTTATTCTTGTATCTGTAAAGTTTCAATAATGTGTTAATAAACTGTGTAGTACCGCACAAAATTTCAGAGTATGCAGGGTTCTAAATTTAAATTTATCATTCCCTGTGTGGAGTTCTTCC

Fln Alignment:

Contig5974___ENAGPHCAEPDLQALLHFKAGIVDDTSGRLRSWNGSNCCRWQGVSCNRQTGRVXXXXXXXXXXXXDFISDTQMKGTLSESLGDLQFLEILEMGALKQITGSIPLSFG-XXXXXXXXXXNANKLGGSVPPFLAYLHNLQELDLSENGLRGTLPXXXXXXXXXXXXXXYTNRLAGPVPESIARLSKLTILDLHGNLLGGPIPRSVGELRSLQSLDMSENRLTGTIPYSIxxxxxxxxxxxxxxxxxxGNIPHSIGKVTTLGFLRLQENKLSGILPASFGGLVNLQRLSVANNMIGGPIPASWGKLSNLKDLYLNNNRLSGSIPNSIxxxxxxxxxxxxxxxxxxxxxPWELSEISDLQVLDISFNNFKFVNIPRVLFELPGLYQLSLAGCGIEGRIPESLSKTPGPXXXXXXXXXXXXGTIPPWLGNMTQLDTLNLSRNALTSTIPEEIRNLQDLTILDLHSNHLTGPIASLFAISSPFPDGNLRTLDLSGNRFTGSIPP-NAGDQNSMEQLFLSHNSLSGQIPSSIGMMKQLKALDLGCNALYGSIPSTLGSLAQLKILKLNENRLSGGIPXXXXXXXXXXXXXXXXXXXXGRIPHGIPLRKFPISSYTDNNGLCGDPLPPCSSRAQDS
B9S2F4______________QSAGKACNRNDLKGLISFKAGIHVDTSGRLAKWVGRSCCNWVGVTCDNTTGRVTAILLAGFISTDDFILQSEMKGWLSPSITLLSFLEVIDLGGLINLAGTIPPAIGFRLPRLRKLYLYGNKLSGSVPHSIGKLSKLEELHLHENRFSGFLPSSLGNLKNLNQLLLHSNRFTGVIPDSLTNLTNLMQLDLHSNAITGQIPDRIGEMQALEKLDLSNNLLRGKIPISLxxxxxxxxxxxxxxxxxxGSVPHSIGKLSKLEELHLHENRFSGFLPSSLGNLKNLNQLLLHSNRFTGVIPDSLTNLTNLMQLDLHSNAITGQIPDRIxxxxxxxxxxxxxxxxxxxxxPCEFSSLQNLQTLDLSFNHLDLVSFPKCLAEMPSLSRIYLAGCGIHGEIPAFLQTTPSPIQELDLSTNHLTGSLPPWLGSLTQLYSLNLSRNFLVSSIPDSVTNLQHLGVLDLHSNKITGPISKIFEICSAFSDGSLTYIDLSDNIFSGGIQQIGVGGQVGIQYLNLSRNILEGEVPTSIGRMKSLQTLDLSCNKFGFTLPEALANVSSLERLKLQKNHFTGKIPVGFLKLRKLKELNLSDNLLVGEIPIGKPLSEFPWTSFSGNKGLCGKPLTPCKVRGYKS

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
1342	33		66		0.997452
1345		66	33		0.997452
1552	80		20		0.995493
1667	88			11	0.923564
1668	88		11		0.923564
1669			11	88	0.923564
1670			11	88	0.923564
1691		11	88		0.923564
1693		88	11		0.923564
1729		90	10		0.90298
1783	90			10	0.90298
1882	90		10		0.90298
1893		10		90	0.90298
1900		10	90		0.90298
1943	11	88			0.923564
1946	88		11		0.923564
1993	16		83		0.994512
1994			83	16	0.994512
1995			83	16	0.994512
2019			16	83	0.994512
2023	66		16	16	0.988813
2024	83		16		0.994512
2026		16	83		0.994512
2027		16		83	0.994512
2031		83	16		0.994512
2033	83	16			0.994512
2035	83		16		0.994512
2056		83		16	0.994512
2057			83	16	0.994512
2067	20		80		0.995493
2071	20			80	0.995493
2073	20	80			0.995493
2075		80	20		0.995493
2076			20	80	0.995493
2077	20			80	0.995493
2078		80	20		0.995493
2079		80	20		0.995493
2080	20			80	0.995493
2081	20	80			0.995493
2082		80	20		0.995493
2084			20	80	0.995493
2086	20			80	0.995493
2098	25			75	0.996473
2183		50		50	1.0
2332		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain