SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5973

Length: 2090 nt

UniGene Fasta

>sp_v3.0_unigene5973
AACCGGGACGCTGAATATATTGGGGCCCTCCCCATCCACTGCGACAACCACTGTGAAATCATCGGGTCCACAGGGAAAATAAGTTAATGTTGCAGAAACGTTCATGTAAATCTATACTTGATGCTATTTCTTAAAACCAGATTGCTTCACTGCAAATAGGAGGAGTTTCTTCTGCATTCTGTCCCGTGAGAGGCAGTCAGCAGCCGAGTCCGGTGGGTCAGGTTATATCATTACAATGGGCTTATTATCTAACAAGGTGGACAAGAGCGAGCTGAGTGCTGGTGATCATGTTTACTCATGGCGGAAAGCTTACACATATGCCCATCACGGGATTTATGTTGGGGGTAACAAAGTTGTCCATTTCACAAGAGGGCCAGACCAAGAACTTGGAACTGGGACCATTCTTGATGCATTTGTCCCTAGTTCAATACGAACTCAATGCCTCACATGCCCTGACTGTGGCTTCCAAAGAGAAAATAGTGGAGTGATGCTTTCCTGTTTAGATTGCTTTCTTGCTGGAGGACCTCTGTATCGATTTGAGTATGGTGTTAGCCCAGCTGTTTTTCTTGCTAAAGCCCGTGGAGGGACATGCACGCTTGCAGAATCAGATCCCCCAGAATCAGTAATTCACCGTGCAATGTACCTGCTTCAAAATGGGTTTGGAAACTACCATATATTTCAGAACAATTGCGAGGACTTTGCAATGTATTGCAAGACAGGGTTGCTTGCTGTTGAGCAAAATGGCCTAGGAATAAGTGGGCAAGCAGCATCGATAATTGGTGCTCCTCTTGCTGCTATTCTTTCCTCTCCCTTTAGACTCCTGTTGGCTGGTCCAGTCGGTGTTGCTACAGTCACGGCTGGAGTTTATTGTTTTAGCAGATATGCAACAGATATTGGTATTCGCACTGATGTAGCTAAGGTGCCAGTGGAGGATTTGGCTGTAAATCTTGGTTGGTCAACCAGTAGTCAGCCTTCATTTGCTGAAAGTTCTACAATGCAGGTTACAACACAGGCATTAAGCAGAAACATAAGCTCCATTCACAGCACAGAAGACTGTCAAATAGATGCTGAATAGAATGAATGAACAATGAATATTACAATCGTGATTGGTACATATTTACAATGTTGGGAGTTCTGAAGTTTCAAGCTACATATACCTCCTTTCATGGTCCTAATCAAATTATTATAGATAATTGGTTTTAGGGGCATGCCAATATCTTACCTACTATTCTCACTTCTTCACCAAAGATACAAACCACAGAATGCCTCCACCTAATTACACATTCTGAAACTAACAGTTTTATCCACCACCTTCAATAGATTCTTGCATGCTACCTTGGGACCCTGGCAGGTTCATCAAAAAGATACACTTCGTAAAAATAATCACTCTTATTTTTACATGAAAAGCCTACAAAGAGTTTGTTACAGATTGCTTGGTGAAGAAGTCGCACCATCCACAGTTTCTGCATCCTCATTTTCCTCCAGCATTTCAGTTAGCATCCCTATCCGATCTTGTAATACACTATTCTCCCTCTCTAACTCCATTCGTTTGCTTCGTTCTTGCTGAAGTTGCAACTGGAGGCGCTCAACGCATCGAGCGTCCTCTTCAAGCTGCTCATTCAAACCATCTATTTCCTGATCCTTTCTGTTCATCTCATGGACAGCAATGCGCCGCATGCTCTCTACCACATCCACATTAACCAGCTTTCTCTTCTTGCCCACAACCCATCCACTCGGATAGGTGGTAGCATCAAAGTCAGGTGGAGGAAGCAGATTATTATTATCATGACGCCTTATTGGCTCCAGAGGTTCAAACAGTGCTCTTTTCCTCTCGGTCAATGGTAACTCTTCTCTCACCTCATTAACAGGAGAAGACCACCGCCTTCTTGGTTTCACTGGGGTGCTTGATGACAGAGGATTGCTCTGAATGATAGTTTCTTTCATTCTCTCAAAAGCTTGCCCATCAGCTTCACCATCCATTTCAGAAATCAAGGCCCTGCACAGAACCCATGTTTTGAATTTTAGGTTTAGTTTCCAGAACTCGGAATTTCGGAAATGGGAAGATTCGGTGTTTTAGAAATGGAAGTTTG

Ace file of the UniGene sp_v3.0_unigene5973

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NC domain-containing protein [Oryza brachyantha]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	Putative uncharacterized protein	-	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G01225.1	NC domain-containing protein-related chr1:96064-97242 FORWARD LENGTH=260	64%
RefSeq	Arabidopsis thaliana	NP_563621.1	NC domain-containing protein-like protein [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002320878.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PT86

Fln msg:

Fln protein: MGLLSNKVDKSELSAGDHVYSWRKAYTYAHHGIYVGGNKVVHFTRGPDQELGTGTILDAFVPSSIRTQCLTCPDCGFQRENSGVMLSCLDCFLAGGPLYRFEYGVSPAVFLAKARGGTCTLAESDPPESVIHRAMYLLQNGFGNYHIFQNNCEDFAMYCKTGLLAVEQNGLGISGQAASIIGAPLAAILSSPFRLLLAGPVGVATVTAGVYCFSRYATDIGIRTDVAKVPVEDLAVNLGWSTSSQPSFAESSTMQVTTQALSRNISSIHSTEDCQIDAE*

Protein Length: 281

Fln nts: AACCGGGACGCTGAATATATTGGGGCCCTCCCCATCCACTGCGACAACCACTGTGAAATCATCGGGTCCACAGGGAAAATAAGTTAATGTTGCAGAAACGTTCATGTAAATCTATACTTGATGCTATTTCTTAAAACCAGATTGCTTCACTGCAAATAGGAGGAGTTTCTTCTGCATTCTGTCCCGTGAGAGGCAGTCAGCAGCCGAGTCCGGTGGGTCAGGTTATATCATTACA_-_ATGGGCTTATTATCTAACAAGGTGGACAAGAGCGAGCTGAGTGCTGGTGATCATGTTTACTCATGGCGGAAAGCTTACACATATGCCCATCACGGGATTTATGTTGGGGGTAACAAAGTTGTCCATTTCACAAGAGGGCCAGACCAAGAACTTGGAACTGGGACCATTCTTGATGCATTTGTCCCTAGTTCAATACGAACTCAATGCCTCACATGCCCTGACTGTGGCTTCCAAAGAGAAAATAGTGGAGTGATGCTTTCCTGTTTAGATTGCTTTCTTGCTGGAGGACCTCTGTATCGATTTGAGTATGGTGTTAGCCCAGCTGTTTTTCTTGCTAAAGCCCGTGGAGGGACATGCACGCTTGCAGAATCAGATCCCCCAGAATCAGTAATTCACCGTGCAATGTACCTGCTTCAAAATGGGTTTGGAAACTACCATATATTTCAGAACAATTGCGAGGACTTTGCAATGTATTGCAAGACAGGGTTGCTTGCTGTTGAGCAAAATGGCCTAGGAATAAGTGGGCAAGCAGCATCGATAATTGGTGCTCCTCTTGCTGCTATTCTTTCCTCTCCCTTTAGACTCCTGTTGGCTGGTCCAGTCGGTGTTGCTACAGTCACGGCTGGAGTTTATTGTTTTAGCAGATATGCAACAGATATTGGTATTCGCACTGATGTAGCTAAGGTGCCAGTGGAGGATTTGGCTGTAAATCTTGGTTGGTCAACCAGTAGTCAGCCTTCATTTGCTGAAAGTTCTACAATGCAGGTTACAACACAGGCATTAAGCAGAAACATAAGCTCCATTCACAGCACAGAAGACTGTCAAATAGATGCTGAATAG___AATGAATGAACAATGAATATTACAATCGTGATTGGTACATATTTACAATGTTGGGAGTTCTGAAGTTTCAAGCTACATATACCTCCTTTCATGGTCCTAATCAAATTATTATAGATAATTGGTTTTAGGGGCATGCCAATATCTTACCTACTATTCTCACTTCTTCACCAAAGATACAAACCACAGAATGCCTCCACCTAATTACACATTCTGAAACTAACAGTTTTATCCACCACCTTCAATAGATTCTTGCATGCTACCTTGGGACCCTGGCAGGTTCATCAAAAAGATACACTTCGTAAAAATAATCACTCTTATTTTTACATGAAAAGCCTACAAAGAGTTTGTTACAGATTGCTTGGTGAAGAAGTCGCACCATCCACAGTTTCTGCATCCTCATTTTCCTCCAGCATTTCAGTTAGCATCCCTATCCGATCTTGTAATACACTATTCTCCCTCTCTAACTCCATTCGTTTGCTTCGTTCTTGCTGAAGTTGCAACTGGAGGCGCTCAACGCATCGAGCGTCCTCTTCAAGCTGCTCATTCAAACCATCTATTTCCTGATCCTTTCTGTTCATCTCATGGACAGCAATGCGCCGCATGCTCTCTACCACATCCACATTAACCAGCTTTCTCTTCTTGCCCACAACCCATCCACTCGGATAGGTGGTAGCATCAAAGTCAGGTGGAGGAAGCAGATTATTATTATCATGACGCCTTATTGGCTCCAGAGGTTCAAACAGTGCTCTTTTCCTCTCGGTCAATGGTAACTCTTCTCTCACCTCATTAACAGGAGAAGACCACCGCCTTCTTGGTTTCACTGGGGTGCTTGATGACAGAGGATTGCTCTGAATGATAGTTTCTTTCATTCTCTCAAAAGCTTGCCCATCAGCTTCACCATCCATTTCAGAAATCAAGGCCCTGCACAGAACCCATGTTTTGAATTTTAGGTTTAGTTTCCAGAACTCGGAATTTCGGAAATGGGAAGATTCGGTGTTTTAGAAATGGAAGTTTG

Fln Alignment:

Contig5973___MGLLSNKVDKSELSAGDHVYSWRKAYTYAHHGIYVGGNKVVHFTRGPDQELGTGTILDAFVPSSIRTQCLTCPDCGFQRENSGVMLSCLDCFLAGGPLYRFEYGVSPAVFLAKARGGTCTLAESDPPESVIHRAMYLLQNGFGNYHIFQNNCEDFAMYCKTGLLAVEQNGLGISGQAASIIGAPLAAILSSPFRLLLAGPXXXXXXXXXXYCFSRYATDIGIRTDVAKVPVEDLAVNLGWSTSSQPSFAESSTMQVTTQALSRNISSIHSTEDCQI
C0PT86______________MGLLSNKVDKSELSTGDHVYSWRKAYTYAHHGIYVGGNKVVHFTRGPGQELGTGTIFDGFVSSSIPTQCLRCPDCGFQRENSGVMLSCLDCFLAGGPLYRFEYGVSPAIFLAKARGGTCTLAESDPPELVIHRAMYLLQNGFGNYHIFQNNCEDFAMYCKTGLLVVEQNGLGRSGQAATIIGAPLAAILSSPFRLLLAGPVGVATVTAGVYCLSRYATDIGIRTDVAKVPVEELAINLGWSTSGEPSFAESS----TTQASSRNRSSIYSTEDCQI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1931	12		87		0.992554
1961	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain