SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5942

Length: 2589 nt

UniGene Fasta

>sp_v3.0_unigene5942
AATGTTTGCTTCTTTTGGAGTTTTTACAGATTAAATTGGTTGGATTGCCCCGATCTGGGTTTACTGGGTCAGAAGCTGGTATTTGAGGTCTGTTCTTCCTTCTGGTCGCAAAAGTCCTTTGTTCAGGGTGCCTGGGGTCTTACGATTTTGTGTTTCATTCTAGTGTTATAGATTGTCTAGCGGTTTAGAGCCGCCATTGGGTACTCATTGTTTGGTCTTACTGCCCCGAAACACAAATTTTTTTGATCTCTCAGGTCAACTGGCTCATGCGGTTTGGCATTTGTGCCCAAAAGCCATAGAGATCTGGGTTTTGTAGAGCATTTGGAATCTTCAGACGTTGGTGTCATCCTAAAATTCAAAGGATTTTTGGTGCTATAGAATCCTGGGGTCTCAAGATTTGGTCCTATCAAGGAAACCACTCAAAGGACGTTCTTGTATTTTAGAGTACTCGGGGTGTTGAGATTTGTTGCTGTATTCAAAACAGTCAACGGGCCTTTCGGTAGCACTGAAGTTCGTTGAGGTTTGATCATCTCAGTTCTTTTGGCCCTCAAATTTGGCCGTTTTGGTCCAGGGAAATATCATCTTGATCGCCGCAGCACTTGGGTTATCAAGATTTGATGTGTTTACTTTGGAAAACTTTCAACAAATTGAAGGGTTTGATCATCAGCACTTGTACTGCTGGCTTGTTTCTTGTATTGAATGAAATCGGAAAGGTTTGAATATCTTAATAACCAGTGTGTCCTCATTCTCCCAGATTTGGGATTATCGACTTCTGATCACCAGAGCCTTTGAATCTCTCGTTGTTGACCTCTGTTTCTGTTTCAAAAATATCAACTATGATCGCCACAGGGCCTCAGGTTATCCAAAATTGATGTATTTGCATAAATACTTGCAATAAATTGAAGGGCTTGATCGTCAGAACGCGGGGTTCTGCAGATTTGGTGAGTTGAAATAAATTGCCAAAGGTTGAAGATTGCAATAACCAGAGTGTTTTGATCCTGCCAGATTTATTATATTTGTTTATAAAATATCAAAAAGTTGAGGATTTTGAGTACTTGGCTGTTGCATTGCTGATTGGTTTTGAAGAAACCAGATAGATCGAAGCTATTTTTTTTTGAAAGATCTATTCTTTAAGAATGTTGACACAGCCAAAGGTGGCGCCGAAAGATGTTGGATCTGCATACAAAGAAGTCCATTTCAGAGGTGTCAGAAAGAGGCCATGGGGAAGGTTTGCTGCAGAAATCAGAGATCCAATGAAGAAAACCCGTGTATGGCTCGGGACATTTGACACAGCAGAGGAAGCAGCCAGAGCATATGATAGTGCAGCCAGAGCACTCAGAGGACCCAAGGCAAAAACTAATTTTGCGTTTGTTCCTCCCTGTGATGATAGGAGTACTAGTCTTAGCAGCACTGTAGAGTCTTGGAGCAGTCCCAAGAATAACACTAATAATAATACAAGGAAAAACCTATCCTTGAATAAAGCAGATGGCATAACACATAAGATTGATCTGAACATTGCGCAAGAGGAGTTTGGCAGGAAAGGTTCTGTACCATATTTAGAAGATAAGATCCTCAATATATCAAAGAAACAGAAAACCTTCAAAAGGAGCTGTGCACCAGACAGGGCCGTGGAGGCCTACAATTGGTCCAGACAGCAGTATCCACAAATGGGTTTTGACCCAAATGCCTGTCATAGTGATTGTGATTCATCTTCATCTGTTGTTGATGATGATGAAGTGGGTACTTCTAGCTTGAGGCCTCAGGGAGTCAGGTTATTACCAGATTTGAATCTGCCACCTTGCGATGACGAAGAGGATTTTAGCAGCATGTTATTGCATCTTTGAATGCGCTCTTCTTTTTTAGTGCCCTGCAAAGGCCACGGGTATTATTGCCAATCCAATGAGGTCCCTATTTTCTTCTCTCTGCCATTGAATCAACCATTTTTGACTTCAGTGCATAGGTATAGCAAGCATTAGTTCTTTGTAATCCTGGCCTTGATATGAAGGAACTTATCTGCTATATTTTACTAGATTTAAATTCATTATTATTGTTCGTATTGGCATTGGGGACTGCATGAAATACACAAGGGCAGTTATTCCTATTTTCTGAGCTAACAACAGTGTAGGAATAACAATGATCAATTTACAGGCTCCGGGAGGGTTGGGACACCGGCTAATATATGATCATCATTGCTGACATTTTGTGTTTATATTTGACAATGTAATCCCGAAAAAGAGTTTAAGCAGTAACTTCTATTTGGCAGTTGGTTTTTTTGGGGCAATGGGTTTAAAGCCTGTTTTCTGATATTTTAGCCTGTGAGATTGGCTAGATCTGGTGGCATCAAGCCATAGTTATGCCATCTGCATAGATCTACTTTCTGATCAACTTCTGTACATAATGCTGATTGCAAAACGGAAAAGGATATTTTCAAGTAGCCTGTCATCTATATCTGGTTTTGATGATTGTTTTCAGAATGTGCTGCTGTGTATAACAATTGTTAATGTTATGTTACAATAAGCTGATAAACGATTTGTAGAGTTCTGCGATCAAAGCAAGTGCTATGCGTCTCTGGAGTCTGATTATATCCGA

Ace file of the UniGene sp_v3.0_unigene5942

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	EREBP-3 homolog n=2 Tax=Stylosanthes hamata RepID=Q9ZR83_STYHA	-	-	2.0e-17	58%
FL-Next	sp=Ethylene-responsive transcription factor 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	76%
Sma3	AP2/ERF domain-containing transcription factor	-	-	1.12706e-41	-

Source	Gene names
Sma3	8F2.12; AP2DCP; At1g03800; At1g12980; At1g24590; At1g28160; At1g28360; At1g28370; At1g50640; At1g53170; At1g80580; At3g20310; At3g61630; At4g34410; At5g13910; At5g44210; B0811B10.20; B1103G11.12; BIERF2; CRF6; DREB; DRN; DRNL; ERE; EREB; EREB2; EREBP; ERE

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	cytokinin mediated signaling pathway	GO:0009736	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	gibberellic acid mediated signaling pathway	GO:0009740	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	embryonic pattern specification	GO:0009880	Biological Process	-
Sma3	positive regulation of seed germination	GO:0010030	Biological Process	-
Sma3	specification of organ axis polarity	GO:0010084	Biological Process	-
Sma3	negative regulation of ethylene mediated signaling pathway	GO:0010105	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	transcription factor import into nucleus	GO:0042991	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-
Sma3	cotyledon development	GO:0048825	Biological Process	-
Sma3	regulation of cell cycle	GO:0051726	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NUDIX hydrolase domain	IPR000086	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Ubiquinol cytochrome reductase, transmembrane domain	IPR004192	-	-
Sma3	Rieske iron-sulphur protein, C-terminal	IPR005805	-	-
Sma3		IPR005806	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Ubiquinol-cytochrome c reductase, iron-sulphur subunit	IPR006317	-	-
Sma3	Rieske iron-sulphur protein	IPR014349	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Rieske [2Fe-2S] iron-sulphur domain	IPR017941	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G20310.1	ATERF-7, ATERF7, ERF7 ethylene response factor 7 chr3:7085957-7086691 REVERSE LENGTH=244	2.0e-19	76%
RefSeq	Arabidopsis thaliana	NP_188666.1	ethylene-responsive transcription factor 7 [Arabidopsis thaliana]	3.0e-19	76%
RefSeq	Populus trichocarpa	XP_002305121.1	AP2/ERF domain-containing transcription factor [Populus trichocarpa]	7.0e-20	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LDE4

Fln msg:

Fln protein: MLTQPKVAPKDVGSAYKEVHFRGVRKRPWGRFAAEIRDPMKKTRVWLGTFDTAEEAARAYDSAARALRGPKAKTNFAFVPPCDDRSTSLSSTVESWSSPKNNTNNNTRKNLSLNKADGITHKIDLNIAQEEFGRKGSVPYLEDKILNISKKQKTFKRSCAPDRAVEAYNWSRQQYPQMGFDPNACHSDCDSSSSVVDDDEVGTSSLRPQGVRLLPDLNLPPCDDEEDFSSMLLHL*

Protein Length: 237

Fln nts: AATGTTTGCTTCTTTTGGAGTTTTTACAGATTAAATTGGTTGGATTGCCCCGATCTGGGTTTACTGGGTCAGAAGCTGGTATTTGAGGTCTGTTCTTCCTTCTGGTCGCAAAAGTCCTTTGTTCAGGGTGCCTGGGGTCTTACGATTTTGTGTTTCATTCTAGTGTTATAGATTGTCTAGCGGTTTAGAGCCGCCATTGGGTACTCATTGTTTGGTCTTACTGCCCCGAAACACAAATTTTTTTGATCTCTCAGGTCAACTGGCTCATGCGGTTTGGCATTTGTGCCCAAAAGCCATAGAGATCTGGGTTTTGTAGAGCATTTGGAATCTTCAGACGTTGGTGTCATCCTAAAATTCAAAGGATTTTTGGTGCTATAGAATCCTGGGGTCTCAAGATTTGGTCCTATCAAGGAAACCACTCAAAGGACGTTCTTGTATTTTAGAGTACTCGGGGTGTTGAGATTTGTTGCTGTATTCAAAACAGTCAACGGGCCTTTCGGTAGCACTGAAGTTCGTTGAGGTTTGATCATCTCAGTTCTTTTGGCCCTCAAATTTGGCCGTTTTGGTCCAGGGAAATATCATCTTGATCGCCGCAGCACTTGGGTTATCAAGATTTGATGTGTTTACTTTGGAAAACTTTCAACAAATTGAAGGGTTTGATCATCAGCACTTGTACTGCTGGCTTGTTTCTTGTATTGAATGAAATCGGAAAGGTTTGAATATCTTAATAACCAGTGTGTCCTCATTCTCCCAGATTTGGGATTATCGACTTCTGATCACCAGAGCCTTTGAATCTCTCGTTGTTGACCTCTGTTTCTGTTTCAAAAATATCAACTATGATCGCCACAGGGCCTCAGGTTATCCAAAATTGATGTATTTGCATAAATACTTGCAATAAATTGAAGGGCTTGATCGTCAGAACGCGGGGTTCTGCAGATTTGGTGAGTTGAAATAAATTGCCAAAGGTTGAAGATTGCAATAACCAGAGTGTTTTGATCCTGCCAGATTTATTATATTTGTTTATAAAATATCAAAAAGTTGAGGATTTTGAGTACTTGGCTGTTGCATTGCTGATTGGTTTTGAAGAAACCAGATAGATCGAAGCTATTTTTTTTTGAAAGATCTATTCTTTAAGA_-_ATGTTGACACAGCCAAAGGTGGCGCCGAAAGATGTTGGATCTGCATACAAAGAAGTCCATTTCAGAGGTGTCAGAAAGAGGCCATGGGGAAGGTTTGCTGCAGAAATCAGAGATCCAATGAAGAAAACCCGTGTATGGCTCGGGACATTTGACACAGCAGAGGAAGCAGCCAGAGCATATGATAGTGCAGCCAGAGCACTCAGAGGACCCAAGGCAAAAACTAATTTTGCGTTTGTTCCTCCCTGTGATGATAGGAGTACTAGTCTTAGCAGCACTGTAGAGTCTTGGAGCAGTCCCAAGAATAACACTAATAATAATACAAGGAAAAACCTATCCTTGAATAAAGCAGATGGCATAACACATAAGATTGATCTGAACATTGCGCAAGAGGAGTTTGGCAGGAAAGGTTCTGTACCATATTTAGAAGATAAGATCCTCAATATATCAAAGAAACAGAAAACCTTCAAAAGGAGCTGTGCACCAGACAGGGCCGTGGAGGCCTACAATTGGTCCAGACAGCAGTATCCACAAATGGGTTTTGACCCAAATGCCTGTCATAGTGATTGTGATTCATCTTCATCTGTTGTTGATGATGATGAAGTGGGTACTTCTAGCTTGAGGCCTCAGGGAGTCAGGTTATTACCAGATTTGAATCTGCCACCTTGCGATGACGAAGAGGATTTTAGCAGCATGTTATTGCATCTTTGA___ATGCGCTCTTCTTTTTTAGTGCCCTGCAAAGGCCACGGGTATTATTGCCAATCCAATGAGGTCCCTATTTTCTTCTCTCTGCCATTGAATCAACCATTTTTGACTTCAGTGCATAGGTATAGCAAGCATTAGTTCTTTGTAATCCTGGCCTTGATATGAAGGAACTTATCTGCTATATTTTACTAGATTTAAATTCATTATTATTGTTCGTATTGGCATTGGGGACTGCATGAAATACACAAGGGCAGTTATTCCTATTTTCTGAGCTAACAACAGTGTAGGAATAACAATGATCAATTTACAGGCTCCGGGAGGGTTGGGACACCGGCTAATATATGATCATCATTGCTGACATTTTGTGTTTATATTTGACAATGTAATCCCGAAAAAGAGTTTAAGCAGTAACTTCTATTTGGCAGTTGGTTTTTTTGGGGCAATGGGTTTAAAGCCTGTTTTCTGATATTTTAGCCTGTGAGATTGGCTAGATCTGGTGGCATCAAGCCATAGTTATGCCATCTGCATAGATCTACTTTCTGATCAACTTCTGTACATAATGCTGATTGCAAAACGGAAAAGGATATTTTCAAGTAGCCTGTCATCTATATCTGGTTTTGATGATTGTTTTCAGAATGTGCTGCTGTGTATAACAATTGTTAATGTTATGTTACAATAAGCTGATAAACGATTTGTAGAGTTCTGCGATCAAAGCAAGTGCTATGCGTCTCTGGAGTCTGATTATATCCGA

Fln Alignment:

Contig5942___PKDVGSAYKEVHFRGVRKRPWGRFAAEIRDPMKKTRVWLGTFDTXXXXXXXXXXXXXXLRGPKAKTNF
Q9LDE4______________PVTAGGSVKEPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNF

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
121		20	80		0.999996
263	20		80		0.999996
300	80		20		0.999996
446		14		85	0.993533
448		85		14	0.993533
497		20		80	0.995493
700	85		14		0.993533
780		83		16	0.994512
889	14	85			0.993533
908		16		83	0.994512
924		85		14	0.993533
1112	20			80	0.995493
1113	20			80	0.995493
1115			20	80	0.995493
1288	85		14		0.993533
2021	44		55		1.0
2156	33		66		0.997452
2284	20		80		0.995493
2438		20		80	0.999996

SSRs (tot: 1)

Start position	End position	Sequence	Length
1724	1735	TGA TGA TGA TGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain