SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5932

Length: 1823 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5932

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Predicted protein n=2 Tax=Physcomitrella patens RepID=A9TKM8_PHYPA	-	-	0.0	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	Squamosa promoter-binding protein, putative	-	-	6.291e-23	-

Source	Gene names
Sma3	At1g02065; At1g20980; At1g27360; At1g27370; At1g53160; At1g69170; At2g33810; At2g42200; At2g47070/At2g47080; At3g57920; At5g43270; At5g50570; B1168A08.33; B1455F06.12; BoB028L01.130; CHLREDRAFT_101247; CHLREDRAFT_115124; F12M16.2; F14M4.9/F14M4.10; F17L21

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	megasporogenesis	GO:0009554	Biological Process	-
Sma3	microsporogenesis	GO:0009556	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	-
Sma3	inflorescence development	GO:0010229	Biological Process	-
Sma3	regulation of vegetative phase change	GO:0010321	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Transcription factor, SBP-box	IPR004333	-	-
Sma3	Zinc ribbon, NADH pyrophosphatase	IPR015376	-	-
Sma3	Squamosa promoter-binding protein	IPR017238	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G02065.1	SPL8 squamosa promoter binding protein-like 8 chr1:365625-367149 FORWARD LENGTH=333	59%
RefSeq	Arabidopsis thaliana	NP_683267.1	squamosa promoter-binding-like protein 8 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002326998.1	predicted protein, partial [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSA8

Fln msg: your sequence is longer than subject: 311 - 198

Fln protein: MGMDQKNIFHNIVKREDLCGAGDFQTRIGLNLGLGGRTYFSSEDNIVNRLYKRPRAISPGSQVPRCQAEGCKADLSTAKHYHRRHKVCELHSKAATVVSGGLTQRFCQQCSRFHVLSEFDEGKRSCRKRLADHNRRRRKPQPNAVVTVSNTESSSALKTTDQDQDTNSGSNQSSLQQPEVQISRSEPPGLLTGISLSQSLPLVLQTSKGQEQYLQQTGPNLSLGGEIALDYPRHSSGGENYNGLEIPIPWLRPAGSGSEFGGSEKNSSNGQLSESGNGGGSSSTVQVFTSITESASSSILHRTWDIGKDG*

Protein Length: 312

Fln nts: AATGTTCATGTACTGGACAGCATCCGTTCCAGTGCTCCGTCGCCTCTTCTGTATTCAGGCGGGAACAGTGCTTTGTCGGGGTTCGGGTCTGTTGGGTACGCTGATTCCACCCGCGCTGCCCTGGAAGAACACAGGAACCACATTCTGGGTTTG_-_ATGGGCATGGACCAGAAGAACATCTTTCACAATATCGTGAAAAGGGAAGATCTCTGCGGCGCAGGAGATTTCCAGACGAGAATCGGGCTAAACTTAGGACTAGGCGGTAGAACATATTTTTCCTCAGAGGACAATATCGTGAACCGGCTGTACAAGAGGCCCAGGGCAATTTCACCGGGCTCGCAGGTGCCCAGATGTCAAGCAGAGGGTTGCAAGGCGGATTTGAGCACTGCGAAACACTATCACCGTCGCCATAAGGTCTGTGAATTGCACTCCAAGGCAGCCACGGTCGTCAGTGGTGGACTCACTCAGAGGTTTTGCCAGCAATGCAGCAGGTTCCACGTCTTGTCTGAGTTTGATGAGGGCAAACGGAGCTGCAGAAAACGCCTTGCAGATCACAATAGACGCAGAAGAAAACCTCAACCCAATGCAGTTGTTACAGTCTCAAATACTGAATCATCTTCTGCGCTCAAGACCACTGATCAAGATCAAGATACCAACAGCGGAAGCAATCAGTCAAGTCTGCAGCAGCCTGAAGTACAGATTTCCAGGTCGGAACCACCGGGCTTGTTGACCGGAATTTCACTATCCCAATCTCTACCACTGGTTCTCCAAACCAGCAAAGGACAAGAGCAGTATTTGCAGCAAACGGGCCCAAATTTGTCCCTGGGAGGAGAAATTGCTCTGGACTACCCGAGACACAGCTCTGGTGGGGAGAATTACAATGGGCTTGAAATACCCATTCCATGGCTGAGACCTGCAGGCTCCGGATCAGAATTTGGTGGATCTGAGAAGAATAGCTCCAATGGACAACTATCAGAATCTGGTAATGGTGGTGGGAGCTCTTCTACTGTTCAGGTTTTCACATCCATTACAGAATCTGCTTCCTCTTCAATCCTCCACAGAACTTGGGACATCGGAAAGGATGGTTAA___TGGAAATCTCTCTGGTTCAAGCAGCCGAGGCCAGCATTATGGGTCGGCCGATCTCAATCTCCAGACCAGTCTAGAAGGCCAGCAGATGCTCAGTTTGTTGGAGAAAGATGTGAGGTCATCCAATACAGACCGCCACAACACTGAGAATGCAGTAGAGTACTTTTCACAACAGCAAGGTCTGAGCTCCAAGAATTCCATTGATGGGCATTCTGAGCACCGCAATCAGCTGAGTTCAAGCTTCTCGGGGATTCAATCGCTTAGATCTTTGAGCCAGTCTATGTATCAGAACATTTTGTGAATCGAGGAAAAGTCTAGACATTGAAAGCTTTTTCGGAAACTCACTCTTCTTCAAGTCTCTAATTAGGAGACCAAAAGTCTTACATCCACCACAGCGTAATTGGGTTGACTTCACTGCAACAACTTCAATCGGATTTAGCCAAAACAAATGGTCCATGCCCATGCCCGACCATGTCCAGGCAAGCATCTGGACCACTTTGAGCTGCTGCTTTCTGGAAACTAGCTTCCATTAAAACAGTTATCATAACTTGCTCCTCATTTTTACTGTAGATTATTATATGATCTCAAGAGCTTTAGAGCTTTTCCCCCACCCTTTTTTGTTCAGCTCCTATCCTGCAATTATTTTGCAAATGTAATCGGGCCGAGTACGCTCTATATCCTTCAGTTTAAACAGAAATGAATTATGTTTATAATTATGAATTGATTCACATTTGGCCTGC

Fln Alignment:

Contig5932___KRPRAIS-----PGSQVPRCQAEGCKADLSTAKHYHRRHKVCELHSKAATVVSGGLTQRFCQQCSRFHVLSEFDEGKRSCRKRLADHNRRRRKPQPNAVV
A9NSA8______________KKPKAASSSSSSPRAQPPACQVEKCAADLADAKEYYRRHRVCEQHSKARVVLVLGLQQRFCQQCSRFHVLEEFDEAKRSCRRRLAGHNERRRKTPSDSSV

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1044	14	85			0.993533
1049	14			85	0.993533
1051	85			14	0.993533
1076		16	83		0.994512
1120	16		83		0.994512
1186			14	85	0.993533
1188			14	85	0.993533
1301		16		83	0.994512
1318			16	83	0.994512
1402	12	87			0.999964
1404	87		12		0.999964
1406	87		12		0.999964
1612		10		90	0.90298
1696	33	66			0.997452
1739		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain