SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5929

Length: 1425 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5929

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ania-6a type cyclin [Arabidopsis thaliana]	-	-	0.0	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	Cyclin-L1-1	-	-	4.361e-09	-

Source	Gene names
Sma3	AT2G26430; At2g26430; CHLREDRAFT_134551; CYCD1; CYCL1; CYCL1-1; GSVIVT00000839001; GSVIVT00018903001; GSVIVT00021278001; LOC_Os01g27940; MICPUCDRAFT_3819; MICPUN_61685; Os01g0377500; OsI_02002; OsJ_01844; P0416G11.14; PHYPADRAFT_136759; PHYPADRAFT_3858; P

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin C/H/T/L	IPR015429	-	-
Sma3	Cyclin L	IPR017060	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G26430.1	RCY1, ATRCY1 arginine-rich cyclin 1 chr2:11243433-11245504 REVERSE LENGTH=416	74%
RefSeq	Arabidopsis thaliana	NP_565622.1	cyclin-L1-1 [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002312033.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABM5

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 143 aas, putative chimeric sequence, your sequence is shorter than subject: 207 - 350

Fln protein: MIYTAIDTFYVTDEQIANSPSRKDGIDEQTEMTLRLFGCELIQESGILLRLPQAVMATGQVLFHRFYFKKSFARFNVKRVAASCVWLAAKLEESPRRIPQVLNVFHRMECRRENLPLEPLEPHSKKYAEMKMDLNRTERHLLKEMGFICHVEHPHKFILNYLTQVEPPPELMQEAWNLANDSSFGKVKASFIFSRSRLSKFLLHQF*

Protein Length: 208

Fln nts: ATGGTCACACAAGCGAACGACTAGTTGGGGTTTCCTCCGGGGACTGTTGTGGAATGGAGACCTCCTTCCGCCAGCAGCTATGAGGAGTGATTTTGAGTGATTGGCGTGGAAGAGTTCGGAAAATCTGTGGCTTTTCCCTTTTCTTTCTTGCCAACCATAGTCACC_-_ATGATTTACACAGCAATCGACACGTTCTATGTGACGGACGAGCAGATTGCCAATTCCCCCTCGCGGAAAGATGGAATCGACGAACAGACGGAGATGACTCTCCGTTTATTCGGTTGCGAATTGATTCAAGAAAGCGGAATTCTGCTTAGATTGCCACAAGCAGTTATGGCAACAGGCCAGGTTCTTTTTCATCGATTCTATTTCAAAAAATCATTTGCACGCTTTAACGTCAAGCGGGTTGCGGCAAGTTGTGTTTGGCTTGCGGCGAAGCTTGAAGAAAGCCCTCGGAGGATTCCGCAGGTTTTGAATGTGTTTCATCGAATGGAATGCAGGCGAGAGAATTTGCCTCTTGAACCTTTAGAACCTCATTCCAAAAAATATGCAGAGATGAAGATGGACTTGAACCGAACAGAACGCCACCTTTTGAAAGAGATGGGCTTCATTTGCCATGTTGAACACCCCCATAAATTCATCTTGAATTATCTAACTCAAGTTGAACCTCCTCCTGAACTGATGCAGGAAGCTTGGAATTTGGCAAATGACAGTTCATTTGGAAAAGTCAAGGCATCATTCATCTTCTCGAGATCGCGATTATCAAAGTTCCTCCTACACCAGTTCTAG___AGAAAAGGAAAGACATCGACATCATCATCCCTATGCATGAAGATGGTGGACCCAGTCCCAATTTTTGGGATGTTAAATGTCCTCCAAAAACCAGCTTACAAATTTTTATACTTAATTGAATATACATATCATATTCTGTGAGCAGGGTGGTTTTGTGGTCTTTGTCTATTAATGCTGTAATACCCGGTGCATATTTTGTTCTGTTTGAGCTGCAAAGCTGCTATTCCTTTGTTTATGAAATTCTGCAAAGAATATCATCATAAGAAGATGGATGGGTTTTAATTATCATTCTAAAACTGAAGAGAATTCTGACCAAAAATTTTCTTGTCATGGAAAATTAGGGAATGTAGAAGGGAATTCTGACCAACAATTTTCTTGTTATGGAAAATTAGGGAATGTAGGAGGGAGTTCTGACCAACAATTTTCTTGTTATGGAAAATTAGGGAATGTAGGAGGGAATTCTGACCAACAATTTTCTTCTTATGGTACGTTAGCAATGCCTATCCCAAAACCTCAAGTGGGATACAATGGTCTCTCTACTGATTGAGGTCTGGATTATGTATGTCTCTGTACTATATATTGATAATTTGGATCACTCAAGTAGGAAAAACAAATATAATGTAATTTTTTTTCACAGCT

Fln Alignment:

Contig5929___MIYTAIDTFYVTDEQIANSPSRKDGIDEQTEMTLRLFGCELIQESGILLRLPQAVMATGQVLFHRFYFKKSFARFNVKRVAASCVWLAAKLEESPRRIPQVLNVFHRMECRRENLPLEPLEPHSKKYAEMKMDLNRTERHLLKEMGFICHVEHPHKFILNYLTQVEPPPELMQEAWNLAND
D5ABM5______________MIYTAIDTFYVTDEQIANSPSRKDGIGEQTEITLRLFGCELIQESGILLRLPQAVMATGQVLFHRFYFKKSFARFNVKRVAASCVWLAAKLEESPRKIPQVLNVFHRMECRRENLPLEPLEPHSKKYAEMKMDLNRTERHLLKEMGFICHVEHPHKFILNYLAQVEPLPELMQEAWNLAND

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
783	14		85		0.993533
1157	42	57			1.0
1169		42		57	1.0
1300	11		88		0.923564
1369	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain