SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5924

Length: 1053 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5924

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	26%

Source	Gene names
Sma3	AT4g32600; At4g32600; F4D11.200; Os05g0179000; OsI_18674; OsJ_17331; POPTRDRAFT_415652;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSJ7

Fln msg: Distance to subject end: 143 aas, your sequence is shorter than subject: 269 - 397

Fln protein: MNSFYPQELQQHSLAIQPESVASSAQISHVNGLIVSEDDQDRPDLQQQRAQGNVLHEDRIFPRIVRRLSRARWFCLIRRIFYYQNGRERSDVRLNPLNSGAWICFEVVMVLAQIVSALVILVLSRHEKPVSPLRLWVVGYAFGCCVSLPLLYWRYKHPCLHNSHPDPNTNTRRLNFSSASSHVRPHDYAGRTAGTDPATINNSNGGIINGESRISLFMERCRMSLDFFFAVWFVIGNVWVFGTRREFAENAPSLYRLCIALLALSALAM

Protein Length: 270

Fln nts: ATGGGGGAGTTGATTGCTCAACCCCTGCAACAATCCACATGAATCGTGTTGAGTTGGGCATTGTTAACAGCACGCAAGTTTTGTGATTTAATGCTGTGGCTTCTGCTTCTGGTTTGGTGAGAATTCATGGACTTGAGAGTAGTGGGCAAGAATATTTGGAGGAATCTATGTAATGGGGAATCATGTGTAGCCCAATATGTTTTCTTGCTGCAGTGTTGATCAGTGCAGCTCAAGCCCTTCATAGTG_-_ATGAATTCGTTTTACCCACAAGAATTGCAGCAGCATTCTTTGGCGATCCAGCCTGAATCGGTTGCTTCTTCGGCTCAGATTAGCCATGTAAACGGACTCATTGTAAGCGAAGATGACCAAGATAGGCCAGACCTGCAGCAACAGAGGGCCCAAGGTAATGTACTTCATGAGGATAGAATTTTTCCTAGGATTGTGAGGAGGCTTTCCAGGGCTAGATGGTTCTGTCTGATTAGAAGGATTTTCTATTATCAAAATGGCAGGGAAAGGTCGGATGTGAGATTGAATCCTTTGAATTCGGGGGCATGGATTTGCTTCGAGGTGGTTATGGTCCTGGCCCAGATTGTTTCGGCTCTGGTTATTCTGGTGCTTTCCAGACACGAAAAGCCCGTATCGCCTCTTCGTTTGTGGGTTGTAGGATATGCTTTTGGGTGCTGTGTCAGCCTTCCGCTACTCTATTGGCGCTACAAGCATCCATGTCTCCATAATTCTCATCCTGATCCAAATACCAATACCCGTCGTCTCAACTTCAGTTCTGCAAGCTCTCATGTAAGGCCGCACGACTATGCTGGGAGAACTGCTGGGACGGACCCTGCAACAATTAACAACTCCAATGGAGGCATTATCAATGGTGAATCCAGGATTTCTCTCTTCATGGAACGGTGCAGAATGTCATTAGACTTCTTCTTCGCCGTATGGTTTGTCATAGGGAATGTATGGGTATTTGGCACGAGGCGTGAATTTGCTGAGAATGCTCCAAGCCTATACAGGTTATGCATTGCACTCCTTGCTTTAAGTGCATTGGCTATG

Fln Alignment:

Contig5924___ICFEVVMVLAQIVSALVILVLSRHEKPVSPLRLWVVGYAFGCCVSLPLLYWRYKHPCLHNSHPDPNTNTRRLNFSSASSHVRPHDYA------GRTAGTDPATXXXXXXXXXXXXXXXXLFMERCRMSLDFFFAVWFVIGNVWVFGTRREFAENAPSLYRLCI
C0PSJ7______________VVLDIIWNLAFVVVATVVLVLSRHENPNMPVRVWVVGYALQCLLHMICVCFEYR-------RRHSNAQQQRSNSGGQSGHTNNNNNSANQQSPGEQQESDDATDEEVDEVLSTERTSIAKRLESANTMFSF---IWWIVGFYWISAGGQILTHDAPQLYWLCV

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
369		11		88	0.923564
371			88	11	0.923564
372			88	11	0.923564
831	11		88		0.923564
837	22			77	0.999999
885			85	14	0.993533
887	14			85	0.993533
888		14		85	0.993533
889	14			85	0.993533
890		85	14		0.993533
891	14			85	0.993533
893	14			85	0.993533
894	14	85			0.993533
896			14	85	0.993533
897	14	85			0.993533
900		14	85		0.993533
901		14	85		0.993533
903	85	14			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain