SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5899

Length: 1943 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5899

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WD repeat and SOF domain-containing protein 1 [Arabidopsis thaliana] gb\|AAK50083.1\|AF372943_1 AT4g28450/F20O9_130 [Arabidopsis thaliana] gb\|AAK73982.1\| AT4g28450/F20O9_130 [Arabidopsis thaliana] gb\|AAN28840.1\| At4g28450/F20O9_130 [Arabidopsis thaliana] gb	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	23%
Sma3	SOF1 protein-like protein	-	-	4.17e-09	-

Source	Gene names
Sma3	AT4g28450; CHLREDRAFT_98291; F20O9.130; GSVIVT00018638001; GSVIVT00037578001; MICPUN_51754; OSTLU_50969; Os01g0238900; OsI_01079; OsI_01086; OsJ_01046; Ot12g02000; PHATR_44047; PHYPADRAFT_199410; POPTRDRAFT_832186; POPTRDRAFT_836650; RCOM_1172980; SOF1; T

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Ribosomal protein S19/S15	IPR002222	-	-
Sma3	Sof1-like protein	IPR007287	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G28450.1	" nucleotide binding;protein binding chr4:14061724-14064582 REVERSE LENGTH=452"	67%
RefSeq	Arabidopsis thaliana	NP_567810.5	WD repeat and SOF domain-containing protein 1 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002327907.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: your sequence is longer than subject: 453 - 314

Fln protein: MKVKIISRSTDEFTRERSNDLQRVFRNFDPNLHTQARAQEYVRALNAAKLDKIFAKPFLAAMSGHIDGISAMAKSPRHLKSIFSGSVDGDIRLWDIAARRTIQQFPGHRGAVRGLTVSTEGERLISCGDDCTVRLWDIPVAGIGESSYGSENVQKPLATYVGKNSFRAVDYQWDSNVFATGGAQVDIWDHDRSEPINSFAWGSDTVISIRFNPAEKDIFATTASDRSIVLYDLRMASPLNKLIMQTRNNAIAWNPREPMNFTAANEDCNCYSYDMRRMNISTCVHQDHVSAVMDIDYSPSGREFVTGSYDRTVRIFPYNAGHSREIYHTKRMQRVFCVKFSGDATYVVSGSDDANIRLWKAKASEQLGVLLPRERKRHEYLDAVKERFKHLPEIKRIERHRHLPKPIYKAALLRHTVNAAAKRKEERKRAHSAPGSVVTDPLRKKRIVAQLE*

Protein Length: 454

Fln nts: GGACGATGCACCGAGAATTATATTTCCGGCTGCAACAGTTTTCCAACTCAGTAATCAACGCCAACGTCCGTCTATGTAAACGGAGACGGAAAAGTGGGCCGGCGCAGCCACGCAAGCCGATTTAAATTAAAGAATCTGCAATCGGCATAAGGGTTGCCCAAGCTGCTACTCATAACACACGAAACCTGCCGACTGAAGTCAATCGAGCTTGAAGGGTTTTTTTGAGCTGTGAAATA_-_ATGAAGGTGAAGATTATATCACGTTCAACAGATGAATTTACAAGGGAACGGAGTAATGATCTTCAGAGGGTTTTTAGAAACTTTGATCCTAACCTACATACTCAGGCAAGGGCTCAAGAATATGTCCGTGCTCTCAATGCAGCAAAATTAGACAAGATTTTTGCAAAACCCTTTCTGGCAGCAATGAGTGGACACATTGATGGCATTTCTGCCATGGCAAAGAGCCCACGTCATTTGAAAAGCATATTTTCGGGTTCCGTGGATGGAGATATCCGGCTCTGGGACATTGCGGCCAGGCGCACAATTCAACAATTTCCAGGTCATAGAGGAGCGGTGCGTGGTTTGACTGTGTCTACAGAAGGAGAGCGGCTTATTTCTTGCGGAGATGATTGCACAGTTAGACTATGGGATATCCCAGTTGCTGGCATTGGGGAATCAAGTTATGGCTCAGAGAATGTTCAAAAGCCACTAGCAACCTATGTGGGAAAAAATTCTTTCAGGGCTGTAGATTACCAGTGGGATAGTAATGTGTTTGCAACTGGTGGGGCTCAAGTTGACATTTGGGATCATGACAGGTCAGAACCGATAAACAGTTTTGCTTGGGGGTCTGATACTGTCATTTCTATACGGTTTAATCCTGCAGAGAAAGATATATTTGCGACAACTGCCAGTGACCGCAGTATTGTTCTATATGACCTTCGAATGGCATCACCTTTGAACAAGTTAATTATGCAGACCAGGAATAATGCCATTGCATGGAATCCAAGAGAACCTATGAATTTCACTGCAGCTAATGAAGATTGCAACTGCTATAGCTATGATATGAGAAGAATGAATATTTCAACATGTGTGCACCAAGACCATGTTTCCGCTGTGATGGATATTGATTATTCTCCATCTGGTCGGGAGTTTGTGACGGGATCTTATGATAGAACAGTGAGAATATTCCCCTATAATGCAGGTCACAGCAGAGAAATCTACCATACGAAACGAATGCAAAGGGTGTTTTGTGTGAAATTTAGTGGTGATGCGACTTATGTTGTCTCTGGAAGCGATGATGCTAATATTCGCCTGTGGAAAGCTAAAGCATCAGAGCAGTTAGGAGTGCTTCTCCCAAGAGAGCGCAAAAGGCACGAATATCTAGATGCTGTAAAGGAACGTTTTAAGCATCTTCCAGAAATTAAACGCATTGAGAGACATCGACACCTACCAAAGCCTATATACAAAGCAGCGCTTCTACGACATACTGTAAATGCTGCAGCAAAGAGGAAAGAGGAGCGTAAGAGAGCGCACAGTGCTCCTGGATCTGTGGTCACTGATCCTCTTCGGAAAAAGCGAATTGTGGCTCAATTGGAGTGA___ATATCTAATTCTAGCATGCCAATGCAGGTTATACTATGTATTGGAGTGAAAATTTAATTATAGCACGCCAATGCAGGTTATACTATGTATTCAAATATGTTATTGGGCAATCGTTATTGCTTTTACCTATGGCCAGCTCACTGTCTGCCAATTTGAATTTAGTGTAACTATATGTACCTTACAGTCTCGCAGCGTAGAATTTTAATTTTCCTTGCATGTTCATTGAATTTTGACCCTTGCCTACAGGAAAATGACAGTTAATGCCATCCAAAAGTTACCGGCACTGTAAATTAAAAAAATGAAAATTGGAGCTTTATAGAAATCATGGAAATTTATTTTCTGATGGAC

Fln Alignment:

Contig5899___GHRGAVRGLTVSTEGERLISCGDDCTVRLWDIPVAGIGESSYGSENVQKPLATYVGKNSFRAVDYQWDSNVFATGGAQVD----IWDHDRSEPINSFAWGSDTVISIRFNPAEKDIFATTASDRSIVLYDLRMASPLNKLIMQTRNNAIAWNPREPMNFTAANEDCNCYSYDMRRMNISTCVHQDHVSAVMDIDYSPSGREFVTGSYDRTVRIFPYNAGHSREIYHTKRMQRVFCVKFSGDAT---YVVSGSDDANIRLWKAKA
A9NPC1______________GHKRAVSSVKFSADGKLLGSASADKSVRIW----------SAGDGSAKRELQGHAEGVS----DMAWSSDSHYVCSASDDKTLRIWDVHTGDCIKTLKGHTNYVFCVNFNP-QSNLIVSGSFDETVRIWDVRTGKCLKVLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDSATGHCLKTLIDDENPPVSFVNFSPNGKFILAGTLDNTLRLWNFATGKFLKTY-TGHVNSKYCISSTFSVTNGKYIVSGSEDNCVYLWDLQA

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
296		33		66	0.997452
341		50		50	1.0
380	80		20		0.995493
480	75		12		0.975346
491	12		87		0.992554
586		81	18		0.999994
612	90		10		0.90298
620		80		20	0.999996
641	72		27		1.0
690		30	70		1.0
701	90		10		0.90298
709		10		90	0.90298
724	10		90		0.90298
845		25	75		1.0
899	15		84		0.999986
911		30		70	1.0
962	27		72		1.0
977	18	81			0.999994
1100		85		14	0.993533
1109		71		28	1.0
1127		12		87	0.992554
1222	88		11		0.923564
1812			77	22	0.999999
1818	11			88	0.923564
1864	85		14		0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain