SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5891

Length: 2127 nt

UniGene Fasta

>sp_v3.0_unigene5891
ATTGTGCTATATTTAGTTGAGTTCTTCCCTATCAATGGACATTGTCGTTTGGTTTTCTTCTGTGTAATTTGTTGGCATACGGAAGCTGCCATGGATTTGAAATAGTAATTCAAATCATAACTGAGGTACTGGGTAATAACAAGGCCTTGCTTGACCCCATTCGCATTCCAAATTAAGTGCATAATGGCAGGTGGAATGTTCATCGAAGGCGGCAATAGCCGAGGGGAGGTTCACCCAGGCAGGGTAACAGTGTTCGTCTTCTTCTCATGCATTGTAGCTGCCACTGGAGGCCTCATCTTCGGTTATGATATAGGAATTTCAGGTGGCGTTACATCCATGGATGACTTTTTACATAAATTTTTCCCTGGTGTGGAAAGGAATATGAAAGAGGCAAAGACTGATGCTTACTGTAAATTTGACAGCCAATCGTTGACTGCATTTACTTCATCACTGTACATTGCTGGTCTGATCGCATCATTCTTTGCCTCGTCTGTCACAAGGTTGTTTGGACGAAAGCTTTCAATGCTCTTAGGGGGTGCAATTTTTCTTTGTGGTGCTGCAATAAATGGAGCAGCAATGAATATTGCCATGCTTATTATTGGACGGATTTTGCTTGGCATCGGTGTAGGGTTCGCTAATCAGTCCGTCCCAGTTTATCTATCTGAAATGGCACCAGCGAAATTGCGTGGAGCTCTGAACATTGGCTTCCAAATGTGTACCACTCTAGGAGTTTTCGGAGCCAATCTTGTAAACTATGGCACACAAAATATTCATCCATGGGGGTGGCGGTTATCATTGGCCCTTGCAGCGGTTCCTGCTTGTATAATTACGTTTGGCTCCATTTGGCTTCCAGATACTCCTAACAGCATGATAGAAAGAGGGCAAACTGCTAAAGCCAGAGTCATGCTAGAGAGAATTAGAGGCACAGCAGAAATCCAGGTAGAATTCGATGAACTGGTTGAAGCCAGTCGATTGGCAAAATTAGTAAAACATCCTTTCCGTAACATCCTCAAGAGAAAATACAGACCTCAACTGGTCATGTGCTTGGCAATACCATTTTTTCAGCAGTTCACAGGGATTAATGTGATAATGTTCTATGCTCCAGTCCTATTTAAAACGATAGGGTTTAAAGGAGCTGCATCCCTCATGTCCGCGGTCATAACAGGACTTGTGAATGTGGGAGCAACTTCTGTATCCATATTTACTGTGGACAAATTGGGCCGCAGACGCCTCTTCATTGCTGGAGGAATTCAGATGCTTATATCTCAGGTCATCATTGCTATAATTCTTGCAACAAAATTTGGAGGACCAGGGGAAGGTAGTCTTCCCAAAACATACGCCATGATACTAGTTTTGCTGATATGCATCTATGTGGCAGCTTTTGCATGGTCGTGGGGTCCCTTGGGCTGGTTGGTTCCTAGTGAAATATTACCCTTGGAAATCAGATCTGCTGGGCAAGCCATCAATGTTTCTGTTAATCTTTTGTTCACATTCGTTGTTGCGGAGATTTTTCTGGAAATGTTATGCCATTTCAAATATGGGCTTTTCCTATTCTTTGCTGGTTGGGTTGTGATCATGACTACTTTCATCTACTTCTTACTTCCAGAAACAAAAAATAAACCCATTGAAGAGATGGGTCAGATTTGGAAAAGCCATTGGTTCTGGGCTAAGTATGTTGATCAAGATGATCAAGATGGTCCACCTAAACCTGCAGTTCATGGGCTTTGACCTCTTTCCAATCGTGAGGGTGTGGATATGTATTCTGTAAAGTCCACTAATTATTCCCATTGAACATGGCTACCATAATTAGACATTAAATGCAAAATTATTTGATTGTAGAATGTACAAGAGATGGTGAGTATGGAGGTTGTAGATTTATAATCATTCCTCCAATGGACACACGGTGAATTACATCCTGTAGTAAAGATGTATGACAACCATGTACTCAGATCATATTATCAATCAAGTCAGATAGTGATGGGCTGTAGTCAGATCATATTATCAATCAAGTCAAATAATGATGGGCTTGCAATATGAGGTCATAGTTGCCAATTTTGGGCAGTTTTAAGAAAAGATGTGTGTCACTTGTAGTTTGTATTTTTTAATTCAGTCACCTCAAATAAATAA

Ace file of the UniGene sp_v3.0_unigene5891

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Monosaccharide transport protein 1 n=3 Tax=Andropogoneae RepID=Q6B4G9_MAIZE	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	Sugar transporter, putative	-	-	4.80645e-43	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	5.177e-25	-

Source	Gene names
Sma3	AGAA.1; At1g07340; At1g11260; At1g34580; At1g50310; At1g77210; At3g05960; At3g19930; At3g19940; At4g02050; At4g21480; At5g23270; At5g26250; At5g26340; At5g61520; B1008E06.22-1; B1008E06.22-2; B1103G11.41; B1317D11.119-1; B1317D11.119-2; F12K21.8; F14I3.9;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	high-affinity hydrogen:glucose symporter activity	GO:0005358	Molecular Function	-
Sma3	sucrose:hydrogen symporter activity	GO:0008506	Molecular Function	-
Sma3	monosaccharide transmembrane transporter activity	GO:0015145	Molecular Function	-
Sma3	substrate-specific transmembrane transporter activity	GO:0022891	Molecular Function	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-
Sma3	pollen development	GO:0009555	Biological Process	-
Sma3	monosaccharide transport	GO:0015749	Biological Process	-
Sma3	sucrose transport	GO:0015770	Biological Process	-
Sma3	carbohydrate transmembrane transport	GO:0034219	Biological Process	-
Sma3	transmembrane transport	GO:0055085	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G19940.1	Major facilitator superfamily protein chr3:6938211-6939975 FORWARD LENGTH=514	63%
RefSeq	Arabidopsis thaliana	NP_188628.1	sugar transport protein 10 [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002310067.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVI3

Fln msg:

Fln protein: MAGGMFIEGGNSRGEVHPGRVTVFVFFSCIVAATGGLIFGYDIGISGGVTSMDDFLHKFFPGVERNMKEAKTDAYCKFDSQSLTAFTSSLYIAGLIASFFASSVTRLFGRKLSMLLGGAIFLCGAAINGAAMNIAMLIIGRILLGIGVGFANQSVPVYLSEMAPAKLRGALNIGFQMCTTLGVFGANLVNYGTQNIHPWGWRLSLALAAVPACIITFGSIWLPDTPNSMIERGQTAKARVMLERIRGTAEIQVEFDELVEASRLAKLVKHPFRNILKRKYRPQLVMCLAIPFFQQFTGINVIMFYAPVLFKTIGFKGAASLMSAVITGLVNVGATSVSIFTVDKLGRRRLFIAGGIQMLISQVIIAIILATKFGGPGEGSLPKTYAMILVLLICIYVAAFAWSWGPLGWLVPSEILPLEIRSAGQAINVSVNLLFTFVVAEIFLEMLCHFKYGLFLFFAGWVVIMTTFIYFLLPETKNKPIEEMGQIWKSHWFWAKYVDQDDQDGPPKPAVHGL*

Protein Length: 516

Fln nts: ATTGTGCTATATTTAGTTGAGTTCTTCCCTATCAATGGACATTGTCGTTTGGTTTTCTTCTGTGTAATTTGTTGGCATACGGAAGCTGCCATGGATTTGAAATAGTAATTCAAATCATAACTGAGGTACTGGGTAATAACAAGGCCTTGCTTGACCCCATTCGCATTCCAAATTAAGTGCATA_-_ATGGCAGGTGGAATGTTCATCGAAGGCGGCAATAGCCGAGGGGAGGTTCACCCAGGCAGGGTAACAGTGTTCGTCTTCTTCTCATGCATTGTAGCTGCCACTGGAGGCCTCATCTTCGGTTATGATATAGGAATTTCAGGTGGCGTTACATCCATGGATGACTTTTTACATAAATTTTTCCCTGGTGTGGAAAGGAATATGAAAGAGGCAAAGACTGATGCTTACTGTAAATTTGACAGCCAATCGTTGACTGCATTTACTTCATCACTGTACATTGCTGGTCTGATCGCATCATTCTTTGCCTCGTCTGTCACAAGGTTGTTTGGACGAAAGCTTTCAATGCTCTTAGGGGGTGCAATTTTTCTTTGTGGTGCTGCAATAAATGGAGCAGCAATGAATATTGCCATGCTTATTATTGGACGGATTTTGCTTGGCATCGGTGTAGGGTTCGCTAATCAGTCCGTCCCAGTTTATCTATCTGAAATGGCACCAGCGAAATTGCGTGGAGCTCTGAACATTGGCTTCCAAATGTGTACCACTCTAGGAGTTTTCGGAGCCAATCTTGTAAACTATGGCACACAAAATATTCATCCATGGGGGTGGCGGTTATCATTGGCCCTTGCAGCGGTTCCTGCTTGTATAATTACGTTTGGCTCCATTTGGCTTCCAGATACTCCTAACAGCATGATAGAAAGAGGGCAAACTGCTAAAGCCAGAGTCATGCTAGAGAGAATTAGAGGCACAGCAGAAATCCAGGTAGAATTCGATGAACTGGTTGAAGCCAGTCGATTGGCAAAATTAGTAAAACATCCTTTCCGTAACATCCTCAAGAGAAAATACAGACCTCAACTGGTCATGTGCTTGGCAATACCATTTTTTCAGCAGTTCACAGGGATTAATGTGATAATGTTCTATGCTCCAGTCCTATTTAAAACGATAGGGTTTAAAGGAGCTGCATCCCTCATGTCCGCGGTCATAACAGGACTTGTGAATGTGGGAGCAACTTCTGTATCCATATTTACTGTGGACAAATTGGGCCGCAGACGCCTCTTCATTGCTGGAGGAATTCAGATGCTTATATCTCAGGTCATCATTGCTATAATTCTTGCAACAAAATTTGGAGGACCAGGGGAAGGTAGTCTTCCCAAAACATACGCCATGATACTAGTTTTGCTGATATGCATCTATGTGGCAGCTTTTGCATGGTCGTGGGGTCCCTTGGGCTGGTTGGTTCCTAGTGAAATATTACCCTTGGAAATCAGATCTGCTGGGCAAGCCATCAATGTTTCTGTTAATCTTTTGTTCACATTCGTTGTTGCGGAGATTTTTCTGGAAATGTTATGCCATTTCAAATATGGGCTTTTCCTATTCTTTGCTGGTTGGGTTGTGATCATGACTACTTTCATCTACTTCTTACTTCCAGAAACAAAAAATAAACCCATTGAAGAGATGGGTCAGATTTGGAAAAGCCATTGGTTCTGGGCTAAGTATGTTGATCAAGATGATCAAGATGGTCCACCTAAACCTGCAGTTCATGGGCTTTGA___CCTCTTTCCAATCGTGAGGGTGTGGATATGTATTCTGTAAAGTCCACTAATTATTCCCATTGAACATGGCTACCATAATTAGACATTAAATGCAAAATTATTTGATTGTAGAATGTACAAGAGATGGTGAGTATGGAGGTTGTAGATTTATAATCATTCCTCCAATGGACACACGGTGAATTACATCCTGTAGTAAAGATGTATGACAACCATGTACTCAGATCATATTATCAATCAAGTCAGATAGTGATGGGCTGTAGTCAGATCATATTATCAATCAAGTCAAATAATGATGGGCTTGCAATATGAGGTCATAGTTGCCAATTTTGGGCAGTTTTAAGAAAAGATGTGTGTCACTTGTAGTTTGTATTTTTTAATTCAGTCACCTCAAATAAATAA

Fln Alignment:

Contig5891___MAGGMFIEGGNSRGEVHPGRVTVFVFFSCIVAATGGLIFGYDIGISGGVTSMDDFLHKFFPGVERNMKEA-KTDAYCKFDSQSLTAFTSSLYIAGLIASFFASSVTRLFGRKLSMLLGGAIFLCXXXXXXXXXXXXXXXXXXXXXXXXXXFANQSVPVYLSEMAPAKLRGALNIGFQMCTTLGVFGANLVNYGTQNIHPWGWRLSLALAAVPACIITFGSIWLPDTPNSMIERGQTAKARVMLERIRGTAEIQVEFDELVEASRLAKLVKHPFRNILKRKYRPQLVMCLAIPFFQQFTGINVIMFYAPVLFKTIGFKGAASLMSAVITGLVNVGATSVSIFTVDKLGRRRLFIAGGIQMLISQVIIAIILATKFGGPGEGSLPKTYAMILVLLICIYVAAFAWSWGPLGWLVPSEILPLEIRSAGQAINVSVNLLFTFVVAEIFLEMLCHFKYGLFLFFAGWVVIMTTFIYFLLPETKNKPIEEMGQIWKSHWFWAKYVDQDD
A9NVI3______________MAGGFVAPSGPAKD--YAGKVTMFVIVTCLISATGGLIFGYDIGISGGVTSMDAFLKKFFPDVYRKQHATTNTNDYCKFDSQLLTTFTSSLYIAGLIASFFASASTRLLGRRTSMLIGGATFLVGAALNGAAVNVAMLIIGRILLGIGVGFANQSIPLYLSEMAPPKLRGGLNMCFQLFITIGILAASCINYGTQKIQDWGWRVSLALAAVPALIITIGSLFLADTPNSLIERGYPEKAQAMLVKIRGTPNVQEEFDDLIEASEASKMVKHPFRNILQRKYRPHLVMAIAIPFFQQLTGINVIMFYAPVLFKTIGFGSNASLLSAVITGLVNVVATTVSIFSVDRIGRRFLFMEGGVQMFFSQILIAIVLGVKFGSSGEGSLSKGFAAFVVVLICVYVAAFAWSWGPLGWLVPSEIFPLEIRSAGQSINVSVNLLFTFIIAQAFLAMLCHMKFGLFLFFAGFVLIMSIFIYMFLPETKNIPIEEMGMVWKRHWFWKNYVEHDD

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
839	40	60			1.0
875	75	25			0.996473
893		25		75	0.996473
926		83		16	0.994512
939	16	83			0.994512
1714		85		14	0.993533
1806		28		71	1.0
1910	85		14		0.993533
2013		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain