SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5890

Length: 3536 nt

UniGene Fasta

>sp_v3.0_unigene5890
CGTCGTGACCTTGGCTGTCACTCAATCTGCCTCCGCCTCTGCCTCCTCGTTGTATTTATTACCGATTATTTTTTTCCAGTTTTTCACCTGTATTAGTTTCTCCAAGTCGCGTAGAGGGAACAAACCCTGGGGCAGCGGTGAGACTCCTGAAGCGTGCGTAATTGGCATGATAGGTTCGAATCTCAGGCCTAGCAGCTGAAGCAGTCCCAGCAAGCAGTGCAGTAGACGTGGTAAATACTTTTGTGGTTGCGTAGGCGGTCAAAGAATACCCTTAAGCGGTGCCTCTTAAGCCTCTCACCAACAACCACCACCACCGTCGCTCGCCCAAATCGAAGAAGCAGCCGTTGTTTCTATTTCTGAATCGCTGCCATTCATTCAATCCATCATTGATTCCAGAGGTGCTCGGCTGCCTCCTCTTCTTTATTTCTTTACTATTTTATTGCCCCCCATCTCCTTGTTTGCCCGGTGCGCTTCTAGGGTTTTGGACAACAATTGCAACAGCTTCCCCGGCGACCTGCTCTGTATAATTGATGCAGTTGATACATTCTGAACTGTAACTTCTATCAAATCTGTGACTCACAGCAGTACATTTCTGTTGCTTAAATTATAAGCTTGGGAGACTGATTGAAGCTATAATGCAAGCCCAAAGGAGCACCTTGCACCCTATACCAGAAACTTTTGATTTGGAAAATATGTCTGACCAAAATAATGTGGATATTGAATCACAGATTTATCCGGTTGAGCGAACAAGTCTCATGGATGCTCCAAATTTGCCCGATTATCAGGCTGTAGGGAGCAGTCCGAGTTGTGGTTTCAGAAACATAGCAAGTCAATCTAGTGGCAGTAGTTCTTTTGTCAATGGTTGGCCCACTGGCAGTGTAACAAATTCTGATATTTCAGCTGATCAGGGATGCACTTCTGAAGATAAAATGGTTATCGGCTGGAATCCAGTTTCAAATGGGCAGTCAACTTCAAGGTTTGAAAGGCAGGTGGTGGACTCACATGACCTTCATTCTGAAAGTGTGTCTGTGGATGCCCTCAACAACCAGGCCATGGATGATCGCCTACATCTCCATTCAAGCTGTAACTATGGAACTACTTCTGATGGTAATAATTATAACTTCAGCACCAATCAGACAGCAGGTGCAAATGAAGGGCAGGCATTCATGGATTTAAGCTGCTGTCCTCACCCAGGTCAATTGGCTGGATTAGAATCTGAACAAGTGACCTTTGCTTGTAGCAGCATGGCTGGATGTATGCCAGAGAACAGCAATGGACGTGCCAATCATCCTATGGATGGCAGACGAGGGTCCTGTAAAAGAAAGACTGTGGAAAGCATTTCAGGTCCATCATCTTTAGATGTCCTCCCATGTTCTTCACAGTGGGATGATGGCCATCTCCGCCTTACAGCTCCTGGACGGCACAACATCAGTAGCAACCTAAATATTCCTGCTACCAATGCAACAATTCCTGCTGTTAGGCCTGTAGAAGAACCTGTCATACCCAGGGCTAGTGTAGGTGACGTGGGTCCAGATTTCAGAGGTTTATCTATGGTTGGGCAATCAGAAGCTCCCCAGAGAGCTGTTCGAGCAAGGCACAACCCTCCACATCAACAGGAACAAAGTTTACCTCAAATATGGCCATCTGGAAATGTTGGAAGGTATATACCTGACTTGCAGCCAAATTCTTCACATTCCAGGAGACTGTTTTCAGGTGACCAGTCTGCAGACACAGGTCCAGCAGGTGTAAGCACTAGTGCCCAACTGCGCCAGCCCAGTATGTTTCATGTGCCATCTGGTATACAGAGGAATTTGCATTCAGTTGGATGGAATGAAAGTTCTATGCCTAGACTTGGCAATGCTTCCAGCTCCTCGAATGCTGGTGCAAGGGAGCGTTCATCTTCTCAACAAGAAGAAGCTAGTTCTAGAAACATGATGATGGGTATTGCTAGTAATGCCTGGTTTGTTGCAGGCTCAGAGAACAGAGCAACTAACCATGAATCTGGAAATTGGGTTTCAGTGAACCGAAATCCAAATGGACCTGGGGATATTGCTTCTTCGATGCTACATCCGCTGCCAAGTATGCCTTGGGGATCACATCATATTCCTTTCACACAAGCACCTAGGAGAAGTAGTGGTTCTTCTCAAGGACAGGGCTTATCATCGTCTGTTTCCAGGCCTTCACAGGGTAGTCATTTTAATCCTTCTCGGAATATTCATTCCTCTTCATCATCAGATGTGCCTGTGCCACCAGTCACTGGTTTGCAAGTCCCACAATATCTTAGATCAGCGGCAGTATTGATGGAACGCCAGGGTGATGGGTTGGTAGGTGTGCCATTTGGGTCGCTACAAGCAATTGCTGCTGAAGGTGATGGACGCAACAGATTAATGTCTGAGCAGATACGTAGTGTATTGGAGCTTGTGCGGAGCCGGAGAGGTGAAAATCTGAGATTTGAGGATATCTTGATTTTAGACCAATCAGCATTTTACGCTGCTGCCGATGCACATGATCAACATAGAGATATGCGATTAGATGTGGATAACATGACTTATGAGGAATTGTTGGATTTGGAGGAACGAATAGGTAATGTGAGCACAGGATTAAGTGAAGAGACAGTTTCAAAGTGTTTGAAGAGAAGTGCATATTACTCTAGCATAGAATCCAGTGCGGATGAAGCCTCCAAGAAGCAGCCAGAGGATGAACTTTGCAGTATATGTCGGGAGGAATACAAGGACAATGAAGAACTGGGTATTCTAGACTGTGGCCATATTCACCACTCGCATTGCATCAGAAAATGGCTATTGCTGAAAAATCTATGCCCTATTTGCAAGAAAACAGCTTTGAATGTATAAAGCCGGGAAGGCAGTGCAAGTACAGATTAAAATACCTAATTACTTGGAAGGCAATTGACTTCAATAGGCTAGAATATTTTTCCAAACAATGACTGCCCAAATCTTTATTCAGTAATTCATTGTCATTTGTTGCAAAATATATTGAAGATGACCCAAGCATCTCACTAAATTATTTAACAGACGATGTACATATTGGTGCTTTTGGTCCATGTGCTATTTTGTTAGTGTTCTTGAACTTGCACTTATTTAGCTTAACCTTCGCTGTCCCTGCCTTTTGGAACACGGGGGAGGCTTTCCAACAGATTGCTTGTTTCGTTTTTGTTTGAAGGAAATTTCACTTCCATCTCAAGGTAACCTTATTCCTTCAAGTCCCTTCGGATTGTAGGAAAGATTATTATTGTTCGTTGGGCTATTGCTTATTGCCCTATTCCAGATATTCTCGCGCGGTTATGTTTTATTATGTAGAGTATAGTTTTATCGTTTGAGGTTATTTTGGTTTCTACATGCATAGGAAAAATATTCACTCCGGCTTTAAAATATGTTTAGAAGGCTTTCTATTGGGTGTGTTTAAATGTGAATTGCACGATTTGTCGAGACATACGCCAATGGCTAGAGTCATCATTGTTATATTAAATTATATATGCAATAAATCTATGTTAGTCACTCCTTCCAGTGACACAGACG

Ace file of the UniGene sp_v3.0_unigene5890

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9R796_RICCO	-	-	0.0	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Sma3	Chromosome chr7 scaffold_20, whole genome shotgun sequence	-	-	4.355e-09	-

Source	Gene names
Sma3	AT4g31450; At4g31450; F3L17.20; GSVIVT00005654001; GSVIVT00017737001; GSVIVT00018214001; GSVIVT00019512001; GSVIVT00019515001; GSVIVT00019516001; GSVIVT00019517001; GSVIVT00019518001; GSVIVT00029951001; OSIGBa0118P15.2; OSJNBa0041A02.20; OSJNBa0087F21.26;

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Aspartate/ornithine carbamoyltransferase	IPR006130	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G45180.1	RING/U-box superfamily protein chr1:17099335-17101683 FORWARD LENGTH=645	0.0	54%
RefSeq	Arabidopsis thaliana	NP_175132.1	RING/U-box domain-containing protein [Arabidopsis thaliana]	0.0	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADP2

Fln msg: your sequence is longer than subject: 739 - 282

Fln protein: MQAQRSTLHPIPETFDLENMSDQNNVDIESQIYPVERTSLMDAPNLPDYQAVGSSPSCGFRNIASQSSGSSSFVNGWPTGSVTNSDISADQGCTSEDKMVIGWNPVSNGQSTSRFERQVVDSHDLHSESVSVDALNNQAMDDRLHLHSSCNYGTTSDGNNYNFSTNQTAGANEGQAFMDLSCCPHPGQLAGLESEQVTFACSSMAGCMPENSNGRANHPMDGRRGSCKRKTVESISGPSSLDVLPCSSQWDDGHLRLTAPGRHNISSNLNIPATNATIPAVRPVEEPVIPRASVGDVGPDFRGLSMVGQSEAPQRAVRARHNPPHQQEQSLPQIWPSGNVGRYIPDLQPNSSHSRRLFSGDQSADTGPAGVSTSAQLRQPSMFHVPSGIQRNLHSVGWNESSMPRLGNASSSSNAGARERSSSQQEEASSRNMMMGIASNAWFVAGSENRATNHESGNWVSVNRNPNGPGDIASSMLHPLPSMPWGSHHIPFTQAPRRSSGSSQGQGLSSSVSRPSQGSHFNPSRNIHSSSSSDVPVPPVTGLQVPQYLRSAAVLMERQGDGLVGVPFGSLQAIAAEGDGRNRLMSEQIRSVLELVRSRRGENLRFEDILILDQSAFYAAADAHDQHRDMRLDVDNMTYEELLDLEERIGNVSTGLSEETVSKCLKRSAYYSSIESSADEASKKQPEDELCSICREEYKDNEELGILDCGHIHHSHCIRKWLLLKNLCPICKKTALNV*

Protein Length: 740

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTGCCTCCGCCTCTGCCTCCTCGTTGTATTTATTACCGATTATTTTTTTCCAGTTTTTCACCTGTATTAGTTTCTCCAAGTCGCGTAGAGGGAACAAACCCTGGGGCAGCGGTGAGACTCCTGAAGCGTGCGTAATTGGCATGATAGGTTCGAATCTCAGGCCTAGCAGCTGAAGCAGTCCCAGCAAGCAGTGCAGTAGACGTGGTAAATACTTTTGTGGTTGCGTAGGCGGTCAAAGAATACCCTTAAGCGGTGCCTCTTAAGCCTCTCACCAACAACCACCACCACCGTCGCTCGCCCAAATCGAAGAAGCAGCCGTTGTTTCTATTTCTGAATCGCTGCCATTCATTCAATCCATCATTGATTCCAGAGGTGCTCGGCTGCCTCCTCTTCTTTATTTCTTTACTATTTTATTGCCCCCCATCTCCTTGTTTGCCCGGTGCGCTTCTAGGGTTTTGGACAACAATTGCAACAGCTTCCCCGGCGACCTGCTCTGTATAATTGATGCAGTTGATACATTCTGAACTGTAACTTCTATCAAATCTGTGACTCACAGCAGTACATTTCTGTTGCTTAAATTATAAGCTTGGGAGACTGATTGAAGCTATA_-_ATGCAAGCCCAAAGGAGCACCTTGCACCCTATACCAGAAACTTTTGATTTGGAAAATATGTCTGACCAAAATAATGTGGATATTGAATCACAGATTTATCCGGTTGAGCGAACAAGTCTCATGGATGCTCCAAATTTGCCCGATTATCAGGCTGTAGGGAGCAGTCCGAGTTGTGGTTTCAGAAACATAGCAAGTCAATCTAGTGGCAGTAGTTCTTTTGTCAATGGTTGGCCCACTGGCAGTGTAACAAATTCTGATATTTCAGCTGATCAGGGATGCACTTCTGAAGATAAAATGGTTATCGGCTGGAATCCAGTTTCAAATGGGCAGTCAACTTCAAGGTTTGAAAGGCAGGTGGTGGACTCACATGACCTTCATTCTGAAAGTGTGTCTGTGGATGCCCTCAACAACCAGGCCATGGATGATCGCCTACATCTCCATTCAAGCTGTAACTATGGAACTACTTCTGATGGTAATAATTATAACTTCAGCACCAATCAGACAGCAGGTGCAAATGAAGGGCAGGCATTCATGGATTTAAGCTGCTGTCCTCACCCAGGTCAATTGGCTGGATTAGAATCTGAACAAGTGACCTTTGCTTGTAGCAGCATGGCTGGATGTATGCCAGAGAACAGCAATGGACGTGCCAATCATCCTATGGATGGCAGACGAGGGTCCTGTAAAAGAAAGACTGTGGAAAGCATTTCAGGTCCATCATCTTTAGATGTCCTCCCATGTTCTTCACAGTGGGATGATGGCCATCTCCGCCTTACAGCTCCTGGACGGCACAACATCAGTAGCAACCTAAATATTCCTGCTACCAATGCAACAATTCCTGCTGTTAGGCCTGTAGAAGAACCTGTCATACCCAGGGCTAGTGTAGGTGACGTGGGTCCAGATTTCAGAGGTTTATCTATGGTTGGGCAATCAGAAGCTCCCCAGAGAGCTGTTCGAGCAAGGCACAACCCTCCACATCAACAGGAACAAAGTTTACCTCAAATATGGCCATCTGGAAATGTTGGAAGGTATATACCTGACTTGCAGCCAAATTCTTCACATTCCAGGAGACTGTTTTCAGGTGACCAGTCTGCAGACACAGGTCCAGCAGGTGTAAGCACTAGTGCCCAACTGCGCCAGCCCAGTATGTTTCATGTGCCATCTGGTATACAGAGGAATTTGCATTCAGTTGGATGGAATGAAAGTTCTATGCCTAGACTTGGCAATGCTTCCAGCTCCTCGAATGCTGGTGCAAGGGAGCGTTCATCTTCTCAACAAGAAGAAGCTAGTTCTAGAAACATGATGATGGGTATTGCTAGTAATGCCTGGTTTGTTGCAGGCTCAGAGAACAGAGCAACTAACCATGAATCTGGAAATTGGGTTTCAGTGAACCGAAATCCAAATGGACCTGGGGATATTGCTTCTTCGATGCTACATCCGCTGCCAAGTATGCCTTGGGGATCACATCATATTCCTTTCACACAAGCACCTAGGAGAAGTAGTGGTTCTTCTCAAGGACAGGGCTTATCATCGTCTGTTTCCAGGCCTTCACAGGGTAGTCATTTTAATCCTTCTCGGAATATTCATTCCTCTTCATCATCAGATGTGCCTGTGCCACCAGTCACTGGTTTGCAAGTCCCACAATATCTTAGATCAGCGGCAGTATTGATGGAACGCCAGGGTGATGGGTTGGTAGGTGTGCCATTTGGGTCGCTACAAGCAATTGCTGCTGAAGGTGATGGACGCAACAGATTAATGTCTGAGCAGATACGTAGTGTATTGGAGCTTGTGCGGAGCCGGAGAGGTGAAAATCTGAGATTTGAGGATATCTTGATTTTAGACCAATCAGCATTTTACGCTGCTGCCGATGCACATGATCAACATAGAGATATGCGATTAGATGTGGATAACATGACTTATGAGGAATTGTTGGATTTGGAGGAACGAATAGGTAATGTGAGCACAGGATTAAGTGAAGAGACAGTTTCAAAGTGTTTGAAGAGAAGTGCATATTACTCTAGCATAGAATCCAGTGCGGATGAAGCCTCCAAGAAGCAGCCAGAGGATGAACTTTGCAGTATATGTCGGGAGGAATACAAGGACAATGAAGAACTGGGTATTCTAGACTGTGGCCATATTCACCACTCGCATTGCATCAGAAAATGGCTATTGCTGAAAAATCTATGCCCTATTTGCAAGAAAACAGCTTTGAATGTATAA___AGCCGGGAAGGCAGTGCAAGTACAGATTAAAATACCTAATTACTTGGAAGGCAATTGACTTCAATAGGCTAGAATATTTTTCCAAACAATGACTGCCCAAATCTTTATTCAGTAATTCATTGTCATTTGTTGCAAAATATATTGAAGATGACCCAAGCATCTCACTAAATTATTTAACAGACGATGTACATATTGGTGCTTTTGGTCCATGTGCTATTTTGTTAGTGTTCTTGAACTTGCACTTATTTAGCTTAACCTTCGCTGTCCCTGCCTTTTGGAACACGGGGGAGGCTTTCCAACAGATTGCTTGTTTCGTTTTTGTTTGAAGGAAATTTCACTTCCATCTCAAGGTAACCTTATTCCTTCAAGTCCCTTCGGATTGTAGGAAAGATTATTATTGTTCGTTGGGCTATTGCTTATTGCCCTATTCCAGATATTCTCGCGCGGTTATGTTTTATTATGTAGAGTATAGTTTTATCGTTTGAGGTTATTTTGGTTTCTACATGCATAGGAAAAATATTCACTCCGGCTTTAAAATATGTTTAGAAGGCTTTCTATTGGGTGTGTTTAAATGTGAATTGCACGATTTGTCGAGACATACGCCAATGGCTAGAGTCATCATTGTTATATTAAATTATATATGCAATAAATCTATGTTAGTCACTCCTTCCAGTGACACAGACG

Fln Alignment:

Contig5890___LDVDNMTYEELLDLEERIGNVSTGLSEETVSKCLKRSAYYSSIESSADEASKKQPEDELCSICREEYKDNEELGILDCGHIHHSHCIRKWLLLKNLCPIC
D5ADP2______________VDPDNMLYEELVALSEVVGTESRGLAPDLISS-LPLSKFVPETPSSSNS--------ERCVICRLEYEGGDIILTLPCKHQYHSDCIKNWLQIKKVCPVC

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
1584	85	14			0.999981
1598	20		80		0.999996
1607	25	75			1.0
1608			25	75	1.0
1609		75		25	1.0
1610		87	12		0.992554
1611	75		25		1.0
1613	75		25		1.0
1615		75	25		1.0
1616	77			22	0.999999
1617	85			14	0.993533
1618		85	14		0.993533
1619	85		14		0.993533
1646		87		12	0.992554
2423	25			75	0.996473
2426			25	75	0.996473
2514		25		75	0.996473
2656	83		16		0.994512
3022			25	75	1.0
3023	75			25	1.0
3024	75	25			1.0
3025	75		25		1.0
3027			25	75	1.0
3029		25		75	1.0
3032	75		25		1.0
3033	75		25		1.0
3035	75			25	1.0
3037	71			28	1.0
3039	33		66		1.0
3040	66	33			1.0
3042	33		66		1.0
3050	16			83	0.994512
3051	16		83		0.994512
3052	16		83		0.994512
3053	16			83	0.994512
3054		16	83		0.994512
3057		16		83	0.994512
3058			16	83	0.994512
3066			16	83	0.994512
3105	62	37			1.0
3108			37	62	1.0
3109		12		87	0.992554
3110	62		37		1.0
3116		62	37		1.0
3123	37	62			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
304	315	ACC ACC ACC ACC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain