SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5878

Length: 3504 nt

UniGene Fasta

>sp_v3.0_unigene5878
TGAAATCCAGGCAAATGACAAGTTCACAGACAGCCCTGCACCCCATGATGGTTACATCAAAGCCACCCACCATTTCAGAGCTTTCACCACCACATTCACTTCTCACTAGCTGTCCATGCAATCTGTGTATGGTGATCTGTTCCAGTGTAAAACAAAAGGATTTGCCAACACACTGACATAAAATGTATCTTTCTATGTAAAAAATGGGAGATATATCTTTGCCACGAACTTCTGCACATGGCTTGTCCCTCAAGTTCAAGAATATCAATGGAGTGGCTGAACCTTTCAATGCTTCAGAGCAACTAATACAGGAGAATTTGAATACAGATACAGAGCTACCTAAGCACCCAATTCAATAGTGTGAACTAACACTCTATATGTGTTTGATTAAGTCAGAGAGAAGGTGCTTATGGATAAGCTGAGTTGATTCAAGCAACCATGGGAAGGACGAGTAAATGGCTCAGAAGTTTACTTGGGGGTAAGAAGGAGTCTAAGCAACAACATCCAGGTCCTCTTCCTGATGCACCTATTCCTCCTTCCAAAGATATAACTGTGGATGAATCTAAGAAGGCGCCGAAGGAAAAGCGCAGGTGGAGCTTCAGAAGATCTGTGAAGGACCACACTTCTGATACAATACCAACAAATATTGAACCCAGACCCTCTTCCATTGAGAGCCGTATCTCGGAAACTGATAATGAACAGAGCAAGCATGCCATTGCAGTGGCTGCAGCGACAGCTGCTGCAGCCGATGCAGCTGTAGCAGCTGCCCAAGCAGCAGCAGCTGTTGTCCGTTTGACGAGCAATGGATGCACATTGAGCCATGTAGATCTCAGTAGAGAAGAATGGGCAGCTACCACGATTCAGTCTGCTTTTCGGGGATACCTGGCAAGAAGAGCATTGCGTGCTCTGAAAGGCTTAGTTAAGTTGCAGGCATTGGTTCGTGGGCATATGGTGAGAAAGCAGGCAACTGCAACTCTCCATTGCATGCAAGCACTAATTAGAGTTCAGGCTAGGGTTCGTGCCCGTCGGGTTCGCATGTCTGAAGAGGGGCAGGCAGTTCAGAGGCGGTTGCTCCAGAGGCGTCAACAGGAGTCCCACTCAAGAAAATCCAATCAGGAGGGATGGAATGCTAGCACTTACAGCATTGAGAAGCAGGAAGCCAAGGCACAAAGCCGACAAGCAGCTGCCATGAAACGTGAAAGAGCATTAGCTTATGCTATATCACAGCAGGAGATTGAGAGAAGATTGGAGGAAAGTGCTAAGATTGTTGAGATGGATACAGGCAGGCTGAAACCAAGTTCAAACAAGAGGAATGGTTCAATCTCAGAATCTAGTTCACTAGAGCAAAGTATATCTGCCAATCAATTTTCTGCTTCCTACCCACTATATAACTCCGTTGTTCAATCACTGCAGCCACCCACTCGCTCCCCTCCCCAGATTGAAGGACAACTGGCTCTGGCTTCTCCTATACTTGTTTCCCCATCCCAGTCAGAGTGTGTAACTGCATCAGCTTTGCGGGATCTCAGCCCAAGAACCTTCAGTGGACAATTTGGGAATGTTGAAGACTGCACATTTTCAACCGCTGAAAGCAGTCCCCAGTACTTCTCAGCTGTCTCAAAGGCCCAAGCTGTAAGAGGTCCATTTACTCCATCGAGACCTGAATATATGGAAACTTTCCTTCAAGATTATTCTTCCTTTCCTAACTACATGGCTAATACTGAATCTTCAAAAGCTAAGGTTCGTTCTCAGAGTGCTCCTAAGCAAAGGCCAGATTACTATTCAGAAAAACAGTTACTGTTAGCTAAGAAAAGATCTTCTTTGTCGGGGGCTATAGAAAATAGGTCAAACTCTTATGGTGCACGTATGCAAAGGTCATCATCTCATGTTGGAACAACCTGTAAGGGGTACACTTATACAAGCTCAATCCAACTAGACAAATCAACAATGTCCCTTAGAGACAGTGAATGTGACACAGCTTCTATATACAGTGGCAATTACAGAAGATCCTTAGAGGTACGAATATCTCTATAATGCTTTACAAAAAAGCTTCAATATTTGTTTGAAAATAGATGCTATTGAGCTTATGCAATTACAGAATTCAAAAGTGCATTTAAAATAGTCTTCATCATATATGCTCCATTTTTGGATACACCATCCTCCATATTTAGAAATTCAATTCCCTTTGCTCTATTAATGTTTCCAATGATATCTGCAATGTGATAATATTTTCTCCTCCTGACAGCCAGAATTCATTGATATGCAGGACTGGTTTGATATTTTCCTCAAATTCCTCTCAGCATATTCTTTCTCACTCTGCATTTTTCTTCTCTTTGTAATGGGTCTTTACTGAAAACGTTTACCAACTTTTCCTGTGATCCTGCCTCCCCATTTTGGATTTGCCTGTGCTAAGAATAATGGACGATGCTTTACTTAGTTTAGCTTGTTCTGTTGGAGTTATTTACAAGTTACTGCCATTGTATTTCTGGCCTGAAATTGACAGTGAGTTTTAATTTTTTTCTTTTCTTTCTAGAGAATGGACAGCACCAGAGAAGGGCAAGTATACTCTCTACAAGTTGGGGAGATGAATAATGTCAATGAAATCTTCATCATTGCAGTCAAAATCAGCTAACTATTCTTTTATTTGTTTTCTTTTGGGTATGCAGCCTTCTTCCAGTAAGCGGTGTTAGAGGATGATTGACACCTACCATTACTCCATGAAAAACTAGTTGAAGTGGAATGGCCATCTTTATGAAGAAGTTTGGTTGGGACTTTCTTCTCACAGTCTTGACCTGAAGTTGTCATAAAACAGTGGAAATAATACAGTTTCTACTTGTCCCTGCTAATGCCATGCATAAGTTTCTCAAAATTGTACCTCACTGTAGCTAGAATTTGATCAAAAACAATAGTATGACGAACAAAAAGCTGCATAGGACTTGAGAAGCAGAGTGGTTCTGCATCTGCTAATATTATTTATATATTTTGTGGTGAGAATTTGAAGGCTGGTCTACATAATATATTATTTCCAAGGATTTTCATTTGAATAAATCGAGGTAGAAACAGGTTACCCATTAGTGCATTAAAACCCTTTGCAGGTTGCACAGCTTCTTTGTGTGACAGAATTACTTGCTGAAGCAATTTGTGTTTGCCGAGAGTTATAAAGTGTAAATTCCACCTTCAGATCATGTGTCTATTCGACACCCAAAATGGTGCTACTATATAATAAACACTCTGTGGATGGACCAGGCCAGTCATTTGCTATTACAATAGCTTGATCTGCTATGAGAAATGATGGAACTTGAGATCTGCATCCAGGAAGATTTTGACTCTGATGTTAGACCACAAGCCCATGTCTCTCAATGAGAAACTAACAGTAGAACAAATAATTATTAATTTTGGAAGCAACTTTCTCGTTGGCACCTTAAATATGTGCTAAAAGCCAACAGTGAAACAATGGGCAATGAAACAATTGAACCTTCATTGTTCATGTTTATAATACAATTCTTA

Ace file of the UniGene sp_v3.0_unigene5878

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTL0_RICCO	-	-	0.0	36%
FL-Next	sp=Protein IQ-DOMAIN 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	45%
Sma3	Calmodulin binding protein, putative	-	-	7.297e-06	-

Source	Gene names
Sma3	AT4g14750; At3g49260; At4g14750; At5g62070; F2K15.120; GCA2; GSVIVT00000506001; GSVIVT00007477001; GSVIVT00016653001; GSVIVT00020044001; GSVIVT00025333001; GSVIVT00026156001; GSVIVT00028647001; GSVIVT00034291001; GSVIVT00037186001; Os01g0708700; OsI_00748

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	DNA repair	GO:0006281	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3		IPR000097	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3		IPR015706	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SF32

Fln msg: your sequence is longer than subject: 531 - 454

Fln protein: MGRTSKWLRSLLGGKKESKQQHPGPLPDAPIPPSKDITVDESKKAPKEKRRWSFRRSVKDHTSDTIPTNIEPRPSSIESRISETDNEQSKHAIAVAAATAAAADAAVAAAQAAAAVVRLTSNGCTLSHVDLSREEWAATTIQSAFRGYLARRALRALKGLVKLQALVRGHMVRKQATATLHCMQALIRVQARVRARRVRMSEEGQAVQRRLLQRRQQESHSRKSNQEGWNASTYSIEKQEAKAQSRQAAAMKRERALAYAISQQEIERRLEESAKIVEMDTGRLKPSSNKRNGSISESSSLEQSISANQFSASYPLYNSVVQSLQPPTRSPPQIEGQLALASPILVSPSQSECVTASALRDLSPRTFSGQFGNVEDCTFSTAESSPQYFSAVSKAQAVRGPFTPSRPEYMETFLQDYSSFPNYMANTESSKAKVRSQSAPKQRPDYYSEKQLLLAKKRSSLSGAIENRSNSYGARMQRSSSHVGTTCKGYTYTSSIQLDKSTMSLRDSECDTASIYSGNYRRSLEVRISL*

Protein Length: 532

Fln nts: TGAAATCCAGGCAAATGACAAGTTCACAGACAGCCCTGCACCCCATGATGGTTACATCAAAGCCACCCACCATTTCAGAGCTTTCACCACCACATTCACTTCTCACTAGCTGTCCATGCAATCTGTGTATGGTGATCTGTTCCAGTGTAAAACAAAAGGATTTGCCAACACACTGACATAAAATGTATCTTTCTATGTAAAAAATGGGAGATATATCTTTGCCACGAACTTCTGCACATGGCTTGTCCCTCAAGTTCAAGAATATCAATGGAGTGGCTGAACCTTTCAATGCTTCAGAGCAACTAATACAGGAGAATTTGAATACAGATACAGAGCTACCTAAGCACCCAATTCAATAGTGTGAACTAACACTCTATATGTGTTTGATTAAGTCAGAGAGAAGGTGCTTATGGATAAGCTGAGTTGATTCAAGCAACC_-_ATGGGAAGGACGAGTAAATGGCTCAGAAGTTTACTTGGGGGTAAGAAGGAGTCTAAGCAACAACATCCAGGTCCTCTTCCTGATGCACCTATTCCTCCTTCCAAAGATATAACTGTGGATGAATCTAAGAAGGCGCCGAAGGAAAAGCGCAGGTGGAGCTTCAGAAGATCTGTGAAGGACCACACTTCTGATACAATACCAACAAATATTGAACCCAGACCCTCTTCCATTGAGAGCCGTATCTCGGAAACTGATAATGAACAGAGCAAGCATGCCATTGCAGTGGCTGCAGCGACAGCTGCTGCAGCCGATGCAGCTGTAGCAGCTGCCCAAGCAGCAGCAGCTGTTGTCCGTTTGACGAGCAATGGATGCACATTGAGCCATGTAGATCTCAGTAGAGAAGAATGGGCAGCTACCACGATTCAGTCTGCTTTTCGGGGATACCTGGCAAGAAGAGCATTGCGTGCTCTGAAAGGCTTAGTTAAGTTGCAGGCATTGGTTCGTGGGCATATGGTGAGAAAGCAGGCAACTGCAACTCTCCATTGCATGCAAGCACTAATTAGAGTTCAGGCTAGGGTTCGTGCCCGTCGGGTTCGCATGTCTGAAGAGGGGCAGGCAGTTCAGAGGCGGTTGCTCCAGAGGCGTCAACAGGAGTCCCACTCAAGAAAATCCAATCAGGAGGGATGGAATGCTAGCACTTACAGCATTGAGAAGCAGGAAGCCAAGGCACAAAGCCGACAAGCAGCTGCCATGAAACGTGAAAGAGCATTAGCTTATGCTATATCACAGCAGGAGATTGAGAGAAGATTGGAGGAAAGTGCTAAGATTGTTGAGATGGATACAGGCAGGCTGAAACCAAGTTCAAACAAGAGGAATGGTTCAATCTCAGAATCTAGTTCACTAGAGCAAAGTATATCTGCCAATCAATTTTCTGCTTCCTACCCACTATATAACTCCGTTGTTCAATCACTGCAGCCACCCACTCGCTCCCCTCCCCAGATTGAAGGACAACTGGCTCTGGCTTCTCCTATACTTGTTTCCCCATCCCAGTCAGAGTGTGTAACTGCATCAGCTTTGCGGGATCTCAGCCCAAGAACCTTCAGTGGACAATTTGGGAATGTTGAAGACTGCACATTTTCAACCGCTGAAAGCAGTCCCCAGTACTTCTCAGCTGTCTCAAAGGCCCAAGCTGTAAGAGGTCCATTTACTCCATCGAGACCTGAATATATGGAAACTTTCCTTCAAGATTATTCTTCCTTTCCTAACTACATGGCTAATACTGAATCTTCAAAAGCTAAGGTTCGTTCTCAGAGTGCTCCTAAGCAAAGGCCAGATTACTATTCAGAAAAACAGTTACTGTTAGCTAAGAAAAGATCTTCTTTGTCGGGGGCTATAGAAAATAGGTCAAACTCTTATGGTGCACGTATGCAAAGGTCATCATCTCATGTTGGAACAACCTGTAAGGGGTACACTTATACAAGCTCAATCCAACTAGACAAATCAACAATGTCCCTTAGAGACAGTGAATGTGACACAGCTTCTATATACAGTGGCAATTACAGAAGATCCTTAGAGGTACGAATATCTCTATAA___TGCTTTACAAAAAAGCTTCAATATTTGTTTGAAAATAGATGCTATTGAGCTTATGCAATTACAGAATTCAAAAGTGCATTTAAAATAGTCTTCATCATATATGCTCCATTTTTGGATACACCATCCTCCATATTTAGAAATTCAATTCCCTTTGCTCTATTAATGTTTCCAATGATATCTGCAATGTGATAATATTTTCTCCTCCTGACAGCCAGAATTCATTGATATGCAGGACTGGTTTGATATTTTCCTCAAATTCCTCTCAGCATATTCTTTCTCACTCTGCATTTTTCTTCTCTTTGTAATGGGTCTTTACTGAAAACGTTTACCAACTTTTCCTGTGATCCTGCCTCCCCATTTTGGATTTGCCTGTGCTAAGAATAATGGACGATGCTTTACTTAGTTTAGCTTGTTCTGTTGGAGTTATTTACAAGTTACTGCCATTGTATTTCTGGCCTGAAATTGACAGTGAGTTTTAATTTTTTTCTTTTCTTTCTAGAGAATGGACAGCACCAGAGAAGGGCAAGTATACTCTCTACAAGTTGGGGAGATGAATAATGTCAATGAAATCTTCATCATTGCAGTCAAAATCAGCTAACTATTCTTTTATTTGTTTTCTTTTGGGTATGCAGCCTTCTTCCAGTAAGCGGTGTTAGAGGATGATTGACACCTACCATTACTCCATGAAAAACTAGTTGAAGTGGAATGGCCATCTTTATGAAGAAGTTTGGTTGGGACTTTCTTCTCACAGTCTTGACCTGAAGTTGTCATAAAACAGTGGAAATAATACAGTTTCTACTTGTCCCTGCTAATGCCATGCATAAGTTTCTCAAAATTGTACCTCACTGTAGCTAGAATTTGATCAAAAACAATAGTATGACGAACAAAAAGCTGCATAGGACTTGAGAAGCAGAGTGGTTCTGCATCTGCTAATATTATTTATATATTTTGTGGTGAGAATTTGAAGGCTGGTCTACATAATATATTATTTCCAAGGATTTTCATTTGAATAAATCGAGGTAGAAACAGGTTACCCATTAGTGCATTAAAACCCTTTGCAGGTTGCACAGCTTCTTTGTGTGACAGAATTACTTGCTGAAGCAATTTGTGTTTGCCGAGAGTTATAAAGTGTAAATTCCACCTTCAGATCATGTGTCTATTCGACACCCAAAATGGTGCTACTATATAATAAACACTCTGTGGATGGACCAGGCCAGTCATTTGCTATTACAATAGCTTGATCTGCTATGAGAAATGATGGAACTTGAGATCTGCATCCAGGAAGATTTTGACTCTGATGTTAGACCACAAGCCCATGTCTCTCAATGAGAAACTAACAGTAGAACAAATAATTATTAATTTTGGAAGCAACTTTCTCGTTGGCACCTTAAATATGTGCTAAAAGCCAACAGTGAAACAATGGGCAATGAAACAATTGAACCTTCATTGTTCATGTTTATAATACAATTCTTA

Fln Alignment:

Contig5878___SREEWAATTIQSAFRGYXXXXXXXXXKGLVKLQALVRGHMVRKQATATLHCMQALIXXXXXXXXXXXXMSEEGQAVXXXXXXXXXXESHSRKSNQEGWNASTYSIEKQEAKAQSRQAAAMKRERALAYAISQQEIERRLEESAKIVEMD
Q9SF32______________SKEEAAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLKCMQTLSRVQSQIRSRRIRMSEENQARHKQLLQKHAKELGGLK-NGGNWNYSNQSKEQVEAGMLHKYEATMRRERALAYAFTHQQNLKSFSKTANPMFMD

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
679	25	75			0.996473
680			66	33	0.997452
748	25	75			0.996473
752		75		25	0.996473
778		75		25	0.996473
825	20		80		0.995493
828		80		20	0.995493
850	20		80		0.995493
899	20		80		0.995493
949		90		10	0.90298
1101	20		80		0.995493
1112			66	33	0.997452
1113	66		33		0.997452
1114	66			33	0.997452
1402		66		33	0.997452
1690	16			83	0.994512
1693	83			16	0.994512
1694			83	16	0.994512
1762		20		80	0.995493
2694	12			87	0.992554
2696	87		12		0.992554
2698	87		12		0.992554
2743		12		87	0.992554
3134		70		30	1.0
3135			30	70	1.0
3136			30	70	1.0
3288		71		28	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
771	782	AGC AGC AGC AGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain