SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5874

Length: 2249 nt

UniGene Fasta

>sp_v3.0_unigene5874
TGGTACGAGGTGGTTTTTTCAAGGATTTTGATGAGGGTCTTTTGCAAAAGATGGCTGATGTATTTTATGAAGCTGATGTAAAAAGTCTTCCTCCCGCACCTGATGTCAGCAATTATTTGATTTCAGATGATGATCTCAATGTGAATAGAGATCTACCTTTGCCAGAGGGCATGGCTGATTCAGAGGTGGAAAGGAGGCTTATCCCACAAGAATCGAATGCAGCTGTACAACCTGACACTACCTCTAACGGTGTAGACAATCAAGATATAAAAATGACAACACCTCCGGTTGATCAGATGCAACCAACTGTTGTACCTTCAACTAACAGTCAGGCACAACCTTCTCGCATGGATCCTGCAATTGAGCAGAATCAAGAATATTGTCAGGGTATTGCTGCAGTTAAACCTTTTGTTCCTCAAACTCATAATGCTATAGAATCTGGTGTGCAAGGTTCACCAAGTAGAGAAGAAGGTGAAGTCCATGATACTGAATTGGATCCGGATACAAGAAGGCGGCTTCTCATATTACAGCATGGCCAAGACACTGGGAAACATAATTCTGTTGATCCTCCTTTCCCAGTTAGGCCATTGAAAATTACATTGCCCCCAAATCAAGCTCCTGGTGGATGGCTTGGACCAGAGGAGGAGATGAGTCCTAGGCAAATTACAAGGCCATCTCAAGGACCTCCTCTTCAACCGGATTCTCTCTCTTTTGATAAGCAACGGCTCCCACAACCTTCATATTATCATGGTGCAGAGAATTCTCTTGCCAATGATAGGTGTTTTGATGAATCTAAAAGACGGTTACCTGAAGATGGATATTTTGGAGATGACAAACTCAAAAACAATCACTTGATTCCGGATTCATTTTCCCATTCAGAAGATGAAGATTCCTCTATGAACAAAAGTTCATCTAACCTCAAACCTGGACGAGTGAATGCACTGATTGCTCCCAATACTGTTGGTGTTCTGCAAGAAATTGCTGCGAAGTGTGGTGCAAAGGTGGAATTTATTTCACTGCTGAACACAACAATGGAGTTAGAGTTCTCGGTTGAGGTCCTGTTTAGTGGTGAAAAAGTGGGTGCAGGCATAGGTAGAACCAAGAAGGAAGCACAACATCGAGCATCTGAAGATGCTCTTAAATACATGGCAAGTCAATATATGTCACAACCTGGATCAGGTGCAGCACTTGGGCGCGTGAACACAGATTCAAGTTTTCATGCATGGGGTGATGATGATGGCTTAAGAGAAACTTCGAGCTCTATAGGTTTTGTTGGTGCACCTAAGGAAGAGGACATGCCCATCGCAAGTACTTCAGGGCAGTCAAAAAATGGTGAACAGAGGTTGCCTGAAGACTCTAAAAAGTCATATAATGCTATTGAAACCCTCAAAGAAATGTGCACTGTGGAAGGTCTTAGTCTTCTTTTCCAAGAACCAGCTGTTGGAAATATGAACAGGAGGGAATGCTGGGCACAAGTTGAAGTAGCTGGACAAATCTTGGGAAAAGGTAGTGGTCCAAGTTGGGAGGCAGCGAAGCTACAGGCTGCAGAGGAGGCTCTTCGTAATTTTAAGTCCACAGTCAGTCAGCGGACACAAAAGCGTTTGAGCTCTCCAAGGCCAGTGTCAGTTCAGCCAAATAAAAGGATTAAGCCTGCAGATTCGTCACGTGGGGCACCTCGGATACTACCTTCTCCAAGAAGATATCCTAAAAATGGACCACCTATTCCTTAACATGTAGTAGAGGATGATGAATCTGTTTTCAAGTTAAATTTGCTTGTACAATAGTGGCTTGGGCTGCTTCCTCCACGGCAATTTTGCATGGAATGTCTCATATAAGACTTTTCATAAATGTCTTGTGATTCTTTCAGCATAGTGCCTTCCTATGTTCATGTCTCAAAATAAGCTGAAAGGTCCAGTGCTCAAATTGAGCTGAATGAAATTAAGACCTGTTTTGCCAATTTATGAAGACATAGAGACAAAAGGAGGGGCTCGCTAAATGACTAGATAAATCTTCTTTTTGTACACTCGCCAGTTTTAAGAAATGGAGATCGTGCTCTGGAAGGTTGTATTCAGGGTTTAGACTTACGATGAGGAAGCATTTTCTCTTTTCTTAGCTTTGTAATGTTAATGAGAATGGAGGTCACTATCACGTTTTACAAAAATATCAGACCGTTGATTTACTGTCTTTGTTATTTGATGATATGATCTATTGAAGCAGACCAAAATTTAATAGATTATCAATTTAATCAA

Ace file of the UniGene sp_v3.0_unigene5874

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Double-stranded RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RZ63_RICCO	-	-	0.0	39%
FL-Next	sp=RNA polymerase II C-terminal domain phosphatase-like 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	37%

Source	Gene names
Sma3	GSVIVT00010272001; OSJNBa0014E22.37; Os02g0639000; OsJ_07667; P0010C01.13; POPTRDRAFT_266381; POPTRDRAFT_670956; RCOM_0935770; VITISV_004100;

Source	GOs	Term	Type	e value	Identity
Sma3	intracellular	GO:0005622	Cellular Component	0.0	-
Sma3	double-stranded RNA binding	GO:0003725	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	NLI interacting factor	IPR004274	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q5YDB6

Fln msg: your sequence is shorter than subject: 576 - 967

Fln protein: VRGGFFKDFDEGLLQKMADVFYEADVKSLPPAPDVSNYLISDDDLNVNRDLPLPEGMADSEVERRLIPQESNAAVQPDTTSNGVDNQDIKMTTPPVDQMQPTVVPSTNSQAQPSRMDPAIEQNQEYCQGIAAVKPFVPQTHNAIESGVQGSPSREEGEVHDTELDPDTRRRLLILQHGQDTGKHNSVDPPFPVRPLKITLPPNQAPGGWLGPEEEMSPRQITRPSQGPPLQPDSLSFDKQRLPQPSYYHGAENSLANDRCFDESKRRLPEDGYFGDDKLKNNHLIPDSFSHSEDEDSSMNKSSSNLKPGRVNALIAPNTVGVLQEIAAKCGAKVEFISLLNTTMELEFSVEVLFSGEKVGAGIGRTKKEAQHRASEDALKYMASQYMSQPGSGAALGRVNTDSSFHAWGDDDGLRETSSSIGFVGAPKEEDMPIASTSGQSKNGEQRLPEDSKKSYNAIETLKEMCTVEGLSLLFQEPAVGNMNRRECWAQVEVAGQILGKGSGPSWEAAKLQAAEEALRNFKSTVSQRTQKRLSSPRPVSVQPNKRIKPADSSRGAPRILPSPRRYPKNGPPIP*

Protein Length: 577

Fln nts: TGGTACGAGGTGGTTTTTTCAAGGATTTTGATGAGGGTCTTTTGCAAAAGATGGCTGATGTATTTTATGAAGCTGATGTAAAAAGTCTTCCTCCCGCACCTGATGTCAGCAATTATTTGATTTCAGATGATGATCTCAATGTGAATAGAGATCTACCTTTGCCAGAGGGCATGGCTGATTCAGAGGTGGAAAGGAGGCTTATCCCACAAGAATCGAATGCAGCTGTACAACCTGACACTACCTCTAACGGTGTAGACAATCAAGATATAAAAATGACAACACCTCCGGTTGATCAGATGCAACCAACTGTTGTACCTTCAACTAACAGTCAGGCACAACCTTCTCGCATGGATCCTGCAATTGAGCAGAATCAAGAATATTGTCAGGGTATTGCTGCAGTTAAACCTTTTGTTCCTCAAACTCATAATGCTATAGAATCTGGTGTGCAAGGTTCACCAAGTAGAGAAGAAGGTGAAGTCCATGATACTGAATTGGATCCGGATACAAGAAGGCGGCTTCTCATATTACAGCATGGCCAAGACACTGGGAAACATAATTCTGTTGATCCTCCTTTCCCAGTTAGGCCATTGAAAATTACATTGCCCCCAAATCAAGCTCCTGGTGGATGGCTTGGACCAGAGGAGGAGATGAGTCCTAGGCAAATTACAAGGCCATCTCAAGGACCTCCTCTTCAACCGGATTCTCTCTCTTTTGATAAGCAACGGCTCCCACAACCTTCATATTATCATGGTGCAGAGAATTCTCTTGCCAATGATAGGTGTTTTGATGAATCTAAAAGACGGTTACCTGAAGATGGATATTTTGGAGATGACAAACTCAAAAACAATCACTTGATTCCGGATTCATTTTCCCATTCAGAAGATGAAGATTCCTCTATGAACAAAAGTTCATCTAACCTCAAACCTGGACGAGTGAATGCACTGATTGCTCCCAATACTGTTGGTGTTCTGCAAGAAATTGCTGCGAAGTGTGGTGCAAAGGTGGAATTTATTTCACTGCTGAACACAACAATGGAGTTAGAGTTCTCGGTTGAGGTCCTGTTTAGTGGTGAAAAAGTGGGTGCAGGCATAGGTAGAACCAAGAAGGAAGCACAACATCGAGCATCTGAAGATGCTCTTAAATACATGGCAAGTCAATATATGTCACAACCTGGATCAGGTGCAGCACTTGGGCGCGTGAACACAGATTCAAGTTTTCATGCATGGGGTGATGATGATGGCTTAAGAGAAACTTCGAGCTCTATAGGTTTTGTTGGTGCACCTAAGGAAGAGGACATGCCCATCGCAAGTACTTCAGGGCAGTCAAAAAATGGTGAACAGAGGTTGCCTGAAGACTCTAAAAAGTCATATAATGCTATTGAAACCCTCAAAGAAATGTGCACTGTGGAAGGTCTTAGTCTTCTTTTCCAAGAACCAGCTGTTGGAAATATGAACAGGAGGGAATGCTGGGCACAAGTTGAAGTAGCTGGACAAATCTTGGGAAAAGGTAGTGGTCCAAGTTGGGAGGCAGCGAAGCTACAGGCTGCAGAGGAGGCTCTTCGTAATTTTAAGTCCACAGTCAGTCAGCGGACACAAAAGCGTTTGAGCTCTCCAAGGCCAGTGTCAGTTCAGCCAAATAAAAGGATTAAGCCTGCAGATTCGTCACGTGGGGCACCTCGGATACTACCTTCTCCAAGAAGATATCCTAAAAATGGACCACCTATTCCTTAA___CATGTAGTAGAGGATGATGAATCTGTTTTCAAGTTAAATTTGCTTGTACAATAGTGGCTTGGGCTGCTTCCTCCACGGCAATTTTGCATGGAATGTCTCATATAAGACTTTTCATAAATGTCTTGTGATTCTTTCAGCATAGTGCCTTCCTATGTTCATGTCTCAAAATAAGCTGAAAGGTCCAGTGCTCAAATTGAGCTGAATGAAATTAAGACCTGTTTTGCCAATTTATGAAGACATAGAGACAAAAGGAGGGGCTCGCTAAATGACTAGATAAATCTTCTTTTTGTACACTCGCCAGTTTTAAGAAATGGAGATCGTGCTCTGGAAGGTTGTATTCAGGGTTTAGACTTACGATGAGGAAGCATTTTCTCTTTTCTTAGCTTTGTAATGTTAATGAGAATGGAGGTCACTATCACGTTTTACAAAAATATCAGACCGTTGATTTACTGTCTTTGTTATTTGATGATATGATCTATTGAAGCAGACCAAAATTTAATAGATTATCAATTTAATCAA

Fln Alignment:

Contig5874___VRGGFFKDFDEGLLQKMADVFYEADVKSLPPAPDVSNYLISDDD---LNVNRDLPLPEGMADSEVERRLIPQESNAAVQPDTTSNGVDNQDIKMTTPPVDQMQ-------PTVVPSTNSQAQPSRMDPAIEQNQEYCQGIAAVKPFVPQTHNAIESGVQGSPSREEGEVHDTELDPDTRRRLLILQHGQDTGKHNSVDPPFPVRPLKITLPPN--QAPGGWLGPEEEMSPRQITRP-SQGPPLQPDSLSFDKQRLPQPSYYHGAENSLANDRCFDESKRRLPEDGYFGDDKLKNNHLIPXXXXXXXXXXXXMNKSSSN----LKPGRVNALIAPNTVGVLQEIAAKCGAKVEFISLLNTTMELEFSVEVLFSGEKVGAGIGRTKKEAQHRASEDALKYMASQYMSQPGSGAALGRVNTDSSFHAWGDDDGLRETSSSIGFVGAPKEEDMPIA----STSGQSKNGEQRLPEDSKKSYNAIETLKEMCTVEGLSLLFQ---EPAVGNMNRRECWAQVEVAGQILGKGSGPSWXXXXXXXXXXXXRNFKSTVSQRTQKRLSSPRPVSVQPNKRIKPADSSRGAPRILPSPRRY
Q5YDB6______________VRGGFFRDFDDSLLPRIAEISYENDAEDIPSPPDVSHYLVSEDDTSGLNGNKDPLSFDGMADTEVERRL-----KEAISASSAVLPAANIDPRIAAPVQFPMASASSVSVPVPVQVVQQAIQPSAMAFPSIPFQQPQQPTSIAKHLVPS-----EPSLQSSPAREEGEVPESELDPDTRRRLLILQHGQDTRDPAPSEPSFPQRP-PVQAPPSHVQSRNGWFPVEEEMDPAQIRRAVSKEYPLDSEMIHMEKHRPRHPSFFSKIDNSTQSDRMLHEN-RRPPKESLRRDEQLRSNNNLPDSHPFYGEDASWNQSSSRNSDLDFLPER-SVSATETSADVLHGIAIKCGAKVEYKPSLVSSTDLRFSVEAWLSNQKIGEGIGKSRREALHKAAEASIQNLADGYMRANGDPGPSHR-------------DATPFTNENISMGNANALNNQPFARDETALPVSSRPTDPRL-EGSMRHTGSITALRELCASEGLEMAFQSQRQLPSDMVHRDELHAQVEIDGRVVGEGVGSTWDEARMQAAERALSSVRSMLGQPLHKRQGSPRSFGGMSNKRLKP-DFQRSLQR-MPSSGRY

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
976			66	33	0.997452
977	66		33		0.997452
978	66			33	0.997452
1067			83	16	0.994512
1068			16	83	0.994512
1126		12		87	0.992554
1127	12	87			0.992554
1130	87		12		0.992554
1131	87		12		0.992554
1162	87		12		0.992554
1175	12		87		0.992554
1315	12			87	0.992554
1318			87	12	0.992554
1319			87	12	0.992554
1340	87		12		0.992554
1368	77			22	0.999999
2075	14		85		0.993533
2157	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain