SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5868

Length: 1408 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5868

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Vacuole membrane protein, putative n=1 Tax=Ricinus communis RepID=B9RSQ1_RICCO	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%

Source	Gene names
Sma3	AT1G05360; AT4g14950; At1g05360; At4g14950; GSVIVT00019959001; OJ1121_A05.14; Os01g0778700; Os07g0571500; OsI_03961; OsI_26550; OsJ_03668; OsJ_24810; P0010B10.5; PHYPADRAFT_112472; PHYPADRAFT_118129; POPTRDRAFT_1090329; POPTRDRAFT_1112915; POPTRDRAFT_2952

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	ribokinase activity	GO:0004747	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	transition metal ion binding	GO:0046914	Molecular Function	-
Sma3	D-ribose metabolic process	GO:0006014	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome b5	IPR001199	-	-
Sma3	Ribokinase	IPR002139	-	-
Sma3	Carbohydrate/purine kinase	IPR011611	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G14950.1	SNARE associated Golgi protein family chr4:8545517-8547722 FORWARD LENGTH=416	62%
RefSeq	Arabidopsis thaliana	NP_974552.1	SNARE associated Golgi protein [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002314707.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRU2

Fln msg: your sequence is shorter than subject: 305 - 449

Fln protein: IKATQCGRVDLKTALYDTIQLSRAPSWIDKSCSEFGSPLFPQLIDSERFRTPLLSVLPQVQLEAILWGFGTAIGELPPYFVSRAARLSGESLKELKELDSSVIEGRGFLSVWLMRLKRWTVSKSQHLNFFTILILASVPNPLFDLAGMMCGQLSVPFWKFFIATLIGKAIIKTHIQTIFIILVCNNQLLEWVENEFILILEHIPVLSGILPHVMNKLHTAKERFNQQQNMTPLSSKANKWDFSFGTIWNTFVWLMLIGFLNKIITSTAQSFLEEKQKEKIEALIAEGVFKSEKENQNVLMAQLT*

Protein Length: 306

Fln nts: CAATAAAAGCTACACAGTGTGGTCGGGTTGATTTGAAAACTGCTCTATATGATACCATTCAGTTAAGCAGAGCACCATCATGGATTGATAAATCCTGTTCAGAGTTTGGCTCCCCGTTGTTTCCCCAGTTGATTGATTCTGAGCGCTTCAGGACTCCTCTACTCAGCGTTTTGCCCCAGGTTCAACTTGAAGCTATTCTGTGGGGATTCGGGACTGCCATTGGGGAGCTTCCTCCTTATTTTGTCTCAAGAGCAGCACGATTGTCTGGGGAGAGCCTGAAAGAACTAAAGGAGTTGGATTCTTCTGTTATTGAGGGAAGAGGATTTCTGTCAGTTTGGCTGATGCGCCTGAAACGCTGGACTGTCTCAAAGTCCCAGCATCTTAACTTCTTTACTATTCTTATCCTTGCATCTGTACCAAATCCCTTGTTTGATCTTGCAGGCATGATGTGTGGGCAACTTTCAGTTCCATTCTGGAAATTCTTCATTGCAACCTTAATTGGAAAGGCAATAATTAAAACACATATACAGACAATTTTTATCATCCTGGTTTGCAACAACCAACTGCTGGAGTGGGTTGAAAATGAGTTTATATTGATACTAGAACACATACCAGTGCTATCTGGTATTTTACCTCATGTTATGAATAAATTGCATACTGCCAAAGAGAGATTTAACCAGCAGCAAAATATGACTCCATTATCATCAAAGGCTAACAAGTGGGATTTCTCATTTGGCACCATTTGGAATACATTTGTCTGGCTTATGCTTATCGGATTCCTCAACAAAATAATTACATCAACTGCCCAAAGCTTTCTCGAGGAGAAACAGAAAGAAAAGATTGAAGCATTGATAGCAGAGGGAGTTTTCAAAAGCGAAAAGGAAAACCAGAATGTTCTAATGGCACAGCTGACCTAA___AGACAGATTGAGGAAATTAGCTAGTCATATTTTTTGTTGCTAACTAAAGCAATGGTAGGATCATCATTTCAATTTTTGGCAACACCAAAATGGGTTAGCCGCTTATTGCAGCCACTTAACTTCTAAAAAGGATATCACGACCCAGATGGGCATTTATCCATTCCTTTTGTACACAATGATTGGTCATTACCAATAGCATGGCTGTTTATGAACATTGACCTGAATTTACTTGGTGTGCTTCCTGCTGTGGTCAAAGGCATTTCCCTTGTACATTGGGCCTTGACTCATGCTTTATTTAGTTGAATTGCCTTGAAATCAAGGGCGTTGTAGAAAAGTTAGGATTTAAACTCAAGGTCTATGCAACCCATACACACTCAATCCTATGCCAAGTGCACCATCTTGTGAATTGCTTTCTTATGTAAAGAGGTTGTCCATTTAAAGACATCCATGATAGTATGTTTAGTATGCATGACAGGTAAAATTTGTCGTGC

Fln Alignment:

Contig5868___IKATQCGRVDLKTALYDTIQLSRAPSWIDKSCSEFGSPLFPQLIDSERFRTPLLSVLPQVQLEAILWGFGTAIGELPPYFVSRAARXXXXXXXXXXXXXXXVIEGRGFLSVWLMRLKRWTVSKSQHLNFFTILILASVPNPLFDLAGMMCGQLSVPFWKFFIATLIGKAXXXXXXXXXXXXLVCNNQLLEWVENEFILILEHIPVLSGILPHVMNKLHTAKERFNQQQNMTPLSSKANKWDFSFGTIWNTFVWLMLIGFLNKIITSTAQSFLEEKQKEKIEALIAEGVFKSEKE
B8LRU2______________LRATQCGRVDLKSAPYDTIQLNRAPSWIDKSCSDFGSPLFPQLIDSERFRTPLLSILPQVQLEAILWGIGTAIGELPPYFVSRAARLSGRRPEALEELDASFVEGSGFLSVWLMRLKRWTFSQSQHLNFFTILVLASVPNPLFDLAGIMCGQLSVPFWKFFTATLIGKAIIKTHIQTIFIILVCNNQLLEWVENEFILILEHIPALSYILPHLMDKLHTARERFNHQHNMPPLSSKANKWDFSFATIWNTFVWLMLIGFFNKIITATAQSFLKEKQKKEMDELIAEGGFKSQRE

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
994	11			88	0.923564
1038	90	10			0.90298
1039	10	90			0.90298
1194			50	50	1.0
1195			50	50	1.0
1196	33		66		0.997452
1197	33	66			0.997452
1198	33	66			0.997452
1199			33	66	0.997452
1215			16	83	0.994512
1216			16	83	0.994512
1217	83		16		0.994512
1218	16	16			0.988813
1243		50		50	1.0
1328		40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain