SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5866

Length: 2028 nt

UniGene Fasta

>sp_v3.0_unigene5866
AGACTCCAGCACCACGCTGACACCAGTGACCTGTCCGATCTTGAAAAAAGAAGAGGAAAACAAACTTGGCCATGCCTACCTTCAAAAAATTCCGCTGCCGAACGCTTAAAATGCAACCCAGTTCGCCTAACAAAGCGAGTGTTTACGGGGATGCGATTGAAAACAGAGGATAAGGATTCCAAGTAGGCGGAAGGAGAGAAGAGACCCAAATCCATGAATTGGGCTGAGCAGGCAACCCGCTTGCCCTGCTGAAAATGTTTTCTGCCATTTGTTTCGAGACGTCCTGGATCCGTTTCGTCGCCTCTAACAGAGCCATGTGCTTCGGAGGTCTGATTGGCCATGGCGGCGTCCGCTTCAATTTCAAAACCAGTATACTATAATGGTCATCGAGTTTTAACCCAGTTGGGACTTCATATTCAAATATTCAGCTTGGTGGATGTATGATTGTTGTTAGATAAGAATATTCATATTATAAACTGGGCCAATTCATCTTAATATGGCACAAAGAAGTACTAGGAAGGCCCTAGTTGGTTTGGGCTTTTTGTGCGCTCTTCTTGTCATTCTTCCAAAGATGTCATGTGCAAATGTTATCTTGATCGGGAACAACATGTCCTTTTCGTTTGATGACAAAGAGGCAAGCTTTGTTCTAGCAATGAAAGGATCAGGAATCTGTGGGATACTCCAAGTAGCAGAACCATCTGATGCATGTTCACAGCTTTCAAACAAAGATGTGTCAGGAGAAGGTGCAAACTCGCCATTTGTATTGATTCAAAGAGGTAATTGCAGCTTTGAGACAAAAGTTCAAGTTGCACAAGATGCTGGCTTCAAGGCAGCTATTATCTACAATAATGAAGATAGCCGTGACTTGGTTACAATGAGTGGAGATTCCAATGGAATTGCAATATATGCAGTGTTTGTCTCTGAGGCAGCAGGTCATGTCCTTTCAAAATATGCTGGAGATTCAAGTATGGAATGTTGGATTATTCCTTCCCTCAAGAACACATCATGGTCAGCAATGGTAATTTCTTTTGCCTCACTGGTTGCCATGGCTGCTGTGTTTGCAATGTGCGTCTTTGTACGTAAGTATCGGCTCCAACGAGTTAGACAAGGACGACCGCGTCTTGACGAGTTAAATGGTATGAGTTTTCGGCAAGTGAAAGCATTACCAAGCCTGATATTCAATTCTGTTGTTGGCAACAACTGTACATCAGAAACCTGTGCTATATGTCTTGAAGACTATACAGCTGGAGAAAAATTACGTGTCCTTCCTTGCTGCCATAGATTTCATGTCTTTTGTATAGATTCTTGGCTCACAATGTGGCGGACTTTTTGCCCTGTATGCAAACGTGATGCAAGGATTATAAATGGAGAGCCTCCAGCGACAGAAAGCACCCCACTTTTGTCTGCAACTTCTTTATTGTCTTCTCCTATTCCATCGGCACAGTCATCCTTTATAGGATCTCCATCTGCGCATGCATCTCCAAGTTCAGTGCTGCCTCGTGCCGAATCAGCATGTTCTCATTATTCTTTGAATGTCTCATTGTACATGCCACAAACATTAGATCCTTGTAGTGTTTCGTCGCTTCTGAGTAGAAACTCTGCTAACATTGCACATACTTCTCTATTGTCCATGGGTAGTCAGTCTTCACTGTTTTCATCCCGAAATTCTCTCTCTTCGTCTCCACATATGACATCACTTGTAGATCTTGGGCCAGACTGTTATAATGCATCTCCGCAATTTGATGCTTCATTCCCTCTTCCACCGTACATTCAATCCTGTGGCGGGTCATTGGCAGTAATGTCTCCTTTCAATTCAACACACTCCTTACCAGGTTATCAGGAGTGTTATGTATAACCATATGGGCATTAGCATAGGTGATCTCGTTTGTGCACTGAGCTCTGAAAAGTGATCTGTGCTAACTAGTCTTTTTCCTGGTGGGACACTAAGAGGACATCTGAACTTCCTATTATTCTCGAAGGCAGCTCATGTCATATAGCTATATAAAATTTTGTTTCAAATTTATATCC

Ace file of the UniGene sp_v3.0_unigene5866

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protease-associated and C3HC4-type RING finger domain-containing protein [Arabidopsis thaliana] gb\|AAL38826.1\| unknown protein [Arabidopsis thaliana] gb\|AAM91777.1\| unknown protein [Arabidopsis thaliana] gb\|AEE35260.1\| protease-associated and C3HC4-type R	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G71980.1	Protease-associated (PA) RING/U-box zinc finger family protein chr1:27098250-27099881 FORWARD LENGTH=448	55%
RefSeq	Arabidopsis thaliana	NP_177343.2	protease-associated and C3HC4-type RING finger domain-containing protein [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002325986.1	predicted protein [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LP69

Fln msg: your sequence is shorter than subject: 453 - 469

Fln protein: MAQRSTRKALVGLGFLCALLVILPKMSCANVILIGNNMSFSFDDKEASFVLAMKGSGICGILQVAEPSDACSQLSNKDVSGEGANSPFVLIQRGNCSFETKVQVAQDAGFKAAIIYNNEDSRDLVTMSGDSNGIAIYAVFVSEAAGHVLSKYAGDSSMECWIIPSLKNTSWSAMVISFASLVAMAAVFAMCVFVRKYRLQRVRQGRPRLDELNGMSFRQVKALPSLIFNSVVGNNCTSETCAICLEDYTAGEKLRVLPCCHRFHVFCIDSWLTMWRTFCPVCKRDARIINGEPPATESTPLLSATSLLSSPIPSAQSSFIGSPSAHASPSSVLPRAESACSHYSLNVSLYMPQTLDPCSVSSLLSRNSANIAHTSLLSMGSQSSLFSSRNSLSSSPHMTSLVDLGPDCYNASPQFDASFPLPPYIQSCGGSLAVMSPFNSTHSLPGYQECYV*

Protein Length: 454

Fln nts: AGACTCCAGCACCACGCTGACACCAGTGACCTGTCCGATCTTGAAAAAAGAAGAGGAAAACAAACTTGGCCATGCCTACCTTCAAAAAATTCCGCTGCCGAACGCTTAAAATGCAACCCAGTTCGCCTAACAAAGCGAGTGTTTACGGGGATGCGATTGAAAACAGAGGATAAGGATTCCAAGTAGGCGGAAGGAGAGAAGAGACCCAAATCCATGAATTGGGCTGAGCAGGCAACCCGCTTGCCCTGCTGAAAATGTTTTCTGCCATTTGTTTCGAGACGTCCTGGATCCGTTTCGTCGCCTCTAACAGAGCCATGTGCTTCGGAGGTCTGATTGGCCATGGCGGCGTCCGCTTCAATTTCAAAACCAGTATACTATAATGGTCATCGAGTTTTAACCCAGTTGGGACTTCATATTCAAATATTCAGCTTGGTGGATGTATGATTGTTGTTAGATAAGAATATTCATATTATAAACTGGGCCAATTCATCTTAAT_-_ATGGCACAAAGAAGTACTAGGAAGGCCCTAGTTGGTTTGGGCTTTTTGTGCGCTCTTCTTGTCATTCTTCCAAAGATGTCATGTGCAAATGTTATCTTGATCGGGAACAACATGTCCTTTTCGTTTGATGACAAAGAGGCAAGCTTTGTTCTAGCAATGAAAGGATCAGGAATCTGTGGGATACTCCAAGTAGCAGAACCATCTGATGCATGTTCACAGCTTTCAAACAAAGATGTGTCAGGAGAAGGTGCAAACTCGCCATTTGTATTGATTCAAAGAGGTAATTGCAGCTTTGAGACAAAAGTTCAAGTTGCACAAGATGCTGGCTTCAAGGCAGCTATTATCTACAATAATGAAGATAGCCGTGACTTGGTTACAATGAGTGGAGATTCCAATGGAATTGCAATATATGCAGTGTTTGTCTCTGAGGCAGCAGGTCATGTCCTTTCAAAATATGCTGGAGATTCAAGTATGGAATGTTGGATTATTCCTTCCCTCAAGAACACATCATGGTCAGCAATGGTAATTTCTTTTGCCTCACTGGTTGCCATGGCTGCTGTGTTTGCAATGTGCGTCTTTGTACGTAAGTATCGGCTCCAACGAGTTAGACAAGGACGACCGCGTCTTGACGAGTTAAATGGTATGAGTTTTCGGCAAGTGAAAGCATTACCAAGCCTGATATTCAATTCTGTTGTTGGCAACAACTGTACATCAGAAACCTGTGCTATATGTCTTGAAGACTATACAGCTGGAGAAAAATTACGTGTCCTTCCTTGCTGCCATAGATTTCATGTCTTTTGTATAGATTCTTGGCTCACAATGTGGCGGACTTTTTGCCCTGTATGCAAACGTGATGCAAGGATTATAAATGGAGAGCCTCCAGCGACAGAAAGCACCCCACTTTTGTCTGCAACTTCTTTATTGTCTTCTCCTATTCCATCGGCACAGTCATCCTTTATAGGATCTCCATCTGCGCATGCATCTCCAAGTTCAGTGCTGCCTCGTGCCGAATCAGCATGTTCTCATTATTCTTTGAATGTCTCATTGTACATGCCACAAACATTAGATCCTTGTAGTGTTTCGTCGCTTCTGAGTAGAAACTCTGCTAACATTGCACATACTTCTCTATTGTCCATGGGTAGTCAGTCTTCACTGTTTTCATCCCGAAATTCTCTCTCTTCGTCTCCACATATGACATCACTTGTAGATCTTGGGCCAGACTGTTATAATGCATCTCCGCAATTTGATGCTTCATTCCCTCTTCCACCGTACATTCAATCCTGTGGCGGGTCATTGGCAGTAATGTCTCCTTTCAATTCAACACACTCCTTACCAGGTTATCAGGAGTGTTATGTATAA___CCATATGGGCATTAGCATAGGTGATCTCGTTTGTGCACTGAGCTCTGAAAAGTGATCTGTGCTAACTAGTCTTTTTCCTGGTGGGACACTAAGAGGACATCTGAACTTCCTATTATTCTCGAAGGCAGCTCATGTCATATAGCTATATAAAATTTTGTTTCAAATTTATATCC

Fln Alignment:

Contig5866___MAQRSTRKALVGLGFLCALLVILPKMSCANVILIGNNMSFSFDDKEASFVLAMKGSGICGILQVAEPSDACSQLSNKDVSGEGANSPFVLIQRGNCSFETKVQVAQDAGFKAAIIYNNEDSRDLVTMSGDSNGIAIYAVFVSEAAGHVLSKYAGDSSMECWIIPSLKNTSWSAMVISFASLXXXXXXXXXXXXXRKYRLQRVRQGRPRLDELNGMSFRQVKALPSLIFNSVVGNNCTSETCAICLEDYTAGEKLRVLPCCHRFHVFCIDSWLTMWRTFCPVCKRDARIINGEPPXXXXXXXXXXXXXXXXXXXXXQSSFIGSPSAHASPSSVLPRAESACSHYSLNVSLYMPQTLD-----------------PCSVSSLLSRNSANIAHTXXXXXXXXXXXXXXXXXXXXXPHMTSLVDLGPDCYNASPQFDASFPLPPYIQSCGGSLAVMSPFNSTHSLPGYQECYV
B8LP69______________MAQRSLRKALAGLGFLCALLVILPKMSCANVILIGNSMSFSFDDTEASFVVAMKGSGICGVLQVAEPSDACSQLSNKNVSGEGANSPFVLIQRGKCSFETKVQIAQDAGFKAAIIYNNEDSSDLVTMRGNSKGITIYAVFVSEAAGHVLLKYAGDSNMECWIIPSLKNTSWSAMVISFASLVAMAAVLAMCIFVRKYRLQQVRHGLLHLDQLNGMSFLQVKALPSLIFNSVSGNNCTSETCAICLEDYTAGEKLRVLPCCHRFHALCIDSWLTMWRTFCPVCKRDARIINGEPPATESTPLLSATSLLSSPIPSAQSSFIGSPSMHASPSSVLPHAESACSLYSLNVSLYIPQTLDSCSVSSLLSRNSANIAHSCSVSSLLSRNSANIAHTSLLSLGIQSSLFSSQNSLSLSPHMASPVDSGPDCYNVSPQFDASFSLPPCIQSCGGSLGVMSPFNSTHSLPGYQECYV

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
865		88		11	0.923564
986		90		10	0.90298
988		11		88	0.923564
989		11		88	0.923564
1162	85		14		0.999981
1590			85	14	0.993533
1591			14	85	0.993533
1592	85		14		0.993533
1594	14		85		0.993533
1687		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain