SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5831

Length: 1259 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5831

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peptide deformylase n=1 Tax=Populus trichocarpa RepID=B9GKW9_POPTR	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	peptide deformylase activity	GO:0042586	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Formylmethionine deformylase	IPR000181	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G15390.1	PDF1A, ATDEF1 peptide deformylase 1A chr1:5294653-5295625 FORWARD LENGTH=269	69%
RefSeq	Arabidopsis thaliana	NP_563974.1	peptide deformylase 1A [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002298107.1	peptide deformylase [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQN9

Fln msg:

Fln protein: MGCGLASSPTIRTNATTAILASLNSPGGALGSPRYSPNRLACIATTTLVSTSSGIHSRLLSSFCHLINVDGYPKYGLLGSKPMHRAHLRTSTVSLAGGFFGFGKKKIALPEIVHAGDPVLHECAEEVALDEIGSERIQKIIDNMIAVMWDAPGCGLAAPQIGVPLQMIVLEDKEEYIRFTLKEEAEAQERHPFDLLIIINPKLKSKGTKTAKFFEGCLSVNGFRGLVERYLEVEVTGFGRDGLPIKVNATGWKARILQHECDHLAGLLYVDKLIPRTFRTAENLRLPLASGCPKPGID*

Protein Length: 300

Fln nts: ATGGGGAACCAGGATTGCTACGGATGCGCTGCTATTGCGAGTGAAG_-_ATGGGTTGTGGATTGGCATCATCTCCCACCATTCGAACCAATGCTACAACTGCCATTTTAGCTTCTCTGAACTCCCCAGGCGGGGCTTTGGGCAGTCCCAGGTACAGCCCAAATCGGCTGGCTTGCATTGCAACAACCACACTGGTTTCTACCTCTTCGGGAATTCACAGTAGACTCTTATCCAGCTTCTGTCATTTGATAAATGTTGATGGGTATCCGAAATATGGATTGTTGGGCTCAAAACCGATGCACAGGGCACATCTGAGGACATCGACAGTGTCTCTGGCAGGTGGGTTCTTTGGATTTGGGAAGAAGAAGATTGCTTTACCGGAGATAGTGCACGCGGGCGATCCCGTGCTACATGAATGTGCAGAAGAAGTAGCATTGGATGAAATTGGCAGCGAGAGGATTCAGAAGATTATAGATAATATGATTGCAGTCATGTGGGATGCACCTGGCTGTGGGCTTGCTGCCCCACAAATCGGAGTACCATTGCAGATGATTGTTCTAGAAGACAAGGAAGAATATATCAGGTTTACGCTAAAGGAGGAAGCTGAAGCTCAGGAACGCCATCCGTTTGATCTTTTGATAATAATAAATCCTAAACTTAAATCAAAGGGCACAAAGACTGCAAAATTTTTTGAAGGATGTCTCAGTGTGAATGGATTTCGTGGACTAGTTGAAAGATATTTGGAGGTTGAAGTAACCGGTTTCGGGCGTGATGGACTTCCAATAAAAGTAAATGCTACTGGTTGGAAGGCAAGGATATTGCAGCATGAATGTGATCATCTTGCTGGTCTGCTTTATGTTGACAAACTGATCCCTAGAACATTCAGAACGGCGGAGAACCTTAGATTGCCTCTTGCAAGCGGTTGTCCCAAGCCAGGCATCGATTAA___GTTCATTTGAAAATTTATTCCTACCCAGTATTACCAATTGCTCATTTTGATTTTGGATAATTTTCTTTCCCTTCTGAAACAGATGCTTTCACTAGCGTTTCTGAAACAGATGCTTTCACTAGCGTTGAAAAAAATTAGTAGATGGTAAATAATTTTATTAGAATTTTTACTATGAAGCAATTCATAGAGGGAAAAAATAGTAAGGTCTTAAACATTCCTCATACAGGTAGGTCTTTCTCAGATTCCATGATGCCACAAAGCTGATTTCTCAATCAGTCAAATTATTAGATTACATGTGCAAGGCACAAATTTTTCA

Fln Alignment:

Contig5831___MGCGLASSPTIRTNATTAILASLNSPGGALGSPRYSPNRLACIATTTLVSTSSGIHSRLLSSFCHLINVDGYPKYGLLGSKPMHRAHLRTSTVSLAXXXXXXXXXXIA-------LPEIVHAGDPVLHECAEEVALDEIGSERIQKIIDNMIAVMWDAPGCGLAAPQIGVPLQMIVLEDKEEYIRFTLKEEAEAQERHPFDLLIIINPKLKSKGTKTAKFFEGCLSVNGFRGLVERYLEVEVTGFGRDGLPIKVNATGWKARILQHECDHLAGLLYVDKLIPRTFRTAENLRLPLASGCPKPGID
A9NQN9______________MGCGLPSSPTFGTNASTAILASLNFSVGALDSHRYSPNRLACNATTTLVSTSVGIHSRLLSTSCHLLNVDGCRKYGLLGTKPMQRGHQRTSTVALAGGFFGFGKKKTGFGKKKTVLPEIVQAGDPVLHECAAEVAVDEIGSERIQKIIDDMIAVMWNAPGCGLAAPQLGVPLQIIVLEDKEEYIRFTLKEETEAQERHPFDLLIIINPKLKSKGIKTAKFFEGCLSVNGFRGLVERHLEVEVTGFGRDGLPIKINATGWKARILQHECDHLAGLLYVDKLIPRTFRTVENFRLPLATGCPKPGVD

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
589	75		25		0.996473
658	80		20		0.995493
682	80			20	0.995493
705		16		83	0.994512
1040	12		87		0.992554
1042	12			87	0.992554
1043		12		87	0.992554
1140	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain