SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5830

Length: 1336 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5830

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin; TRAF-like [Medicago truncatula]	-	-	1.0e-38	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%

Source	Gene names
Sma3	PHYPADRAFT_25870; PHYPADRAFT_26035;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Seven-in-absentia protein, sina	IPR004162	-	-
Sma3	Zinc finger, SIAH-type	IPR013010	-	-
Sma3	Seven In Absentia Homolog-type	IPR013323	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Seven-in-absentia protein, TRAF-like domain	IPR018121	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEC6

Fln msg:

Fln protein: MGNDSYDSGDKASAPGGGSGKTLIATIDPDAFECIICMEPLSPPIFQCTNGHIACSSCCFRMENRCHSCLNPIGKIRCLAMEKLIESMKVACIYADSGCRELVRYSHITAHQSKCIYAPYLCSVSGCSFIGPSTRFSDHFISAHGACIIRQFRYEAWFTVLLATDEQFCILEGEDMVFLLQNKMKLLGNMVYITCIGPASSEEHYSYQIEIKKGRRRLTMESVPRSIVGIDEIPQDFLLIPVETYEEDGHLTFELSFRHVA*

Protein Length: 263

Fln nts: TTCCAATCCGCTGTGCCTTGCAAATGTGTTTTGTTCACCTTTCGGAGTCCCGACCACGGTTTTATAAACGACGAGACAATATTACAAGAGAGGGAGGCCAATATAAATGTTAAATGACAGTGCTCTTTATTCCATGGGAAGAACCACCGCAATGACGTAGGGAAAAAGACAGAAGTGGCGGGGAAAGAGGGACGAGAACCTGAGAAGTTTTCATCCGGAGAAGCCATTGATGAGTTTAGGTCTCGCAAGAGACTAAATTATCCGTGTGAAGAATCCTTACAGGTAGCTATC_-_ATGGGAAACGATTCATATGACTCTGGAGACAAGGCTTCAGCGCCAGGTGGAGGCAGCGGCAAGACTCTTATTGCTACCATCGACCCTGACGCCTTTGAATGCATAATCTGCATGGAACCCCTTTCTCCCCCAATTTTCCAATGTACAAATGGACATATAGCCTGTTCCTCCTGCTGTTTTCGGATGGAGAATAGATGCCATTCATGTCTTAATCCAATTGGAAAGATCCGTTGTCTGGCCATGGAAAAATTGATCGAGTCCATGAAAGTAGCTTGCATATATGCTGATAGTGGATGTAGAGAGTTAGTTAGATATTCCCACATAACTGCACACCAGTCCAAATGTATATATGCACCATACTTGTGTTCTGTGTCAGGATGCAGCTTTATTGGTCCATCAACACGGTTTTCTGACCATTTCATCTCTGCACATGGAGCTTGTATTATAAGGCAATTTAGATACGAGGCCTGGTTCACAGTATTGTTGGCCACAGACGAGCAGTTTTGTATCTTAGAAGGTGAAGATATGGTATTTCTTCTTCAGAATAAGATGAAACTTCTAGGAAACATGGTTTACATAACTTGTATTGGACCAGCCTCTTCGGAGGAGCACTACTCATATCAAATCGAGATAAAAAAAGGAAGGCGGCGTTTGACAATGGAAAGTGTTCCACGAAGCATTGTTGGGATAGATGAAATTCCTCAGGATTTCCTTCTTATTCCGGTGGAAACTTACGAGGAAGATGGACATCTCACCTTTGAGTTATCGTTTCGTCATGTAGCGTGA___TTAACTTAGGGTCTGATTGTTTTTTATTGAGGCCTGTGAATTTATGAATTTGTGAATGTAGGGTGTTTTGGCATAATCCGTTTCACTTTTTAACATATGCTAGTGAAAGTTGCAATGCGTGGTCCATTTTTCTTGGATAAAAGCTCTGTAAATATAGTTTCTTCAATGTGAAAAAAAAAGAGTCTTTCTAGTGAGAACATTTGTCATATATGTACAAAGGGATCGTTAAATCCCAAGATAGAAAATGTTGTGTAATATA

Fln Alignment:

Contig5830___MGNDSYDSGDKASAP-GGGSGKTLIATIDPDAFECIICMEPLSPPIFQCTNGHIACSSCCFRMENRCHSCLNPIGKIRCLAMEKLIESMKVACIYADSGCRELVRYSHITAHQSKCIYAPYLCSVSGCSFIGPSTRFSDHFISAHGACIIRQFRYEAWFTVLLATDEQFCILEGEDMVFLLQNKMKLLGNMVYITCIGPASSEEHYSYQIEIKKGRRRLTMESVPRSIVGIDEIPQDFLLIPVETYEEDGHLTFELSFRHVA
D5AEC6______________MGNDPYGSGDEESAPEGGGSGKTLIATIDPDAFECIICMEPLSPPIFQCTNGHIACSSCCFLMNNRCHSCLNPIGKIRCLAIEKLIESMKVGCIYAHHGCRELVRYSQITAHQSKCIYAPYSCSVSGCSFSGPSIRFSDHFTSVHGACKM-QFRYEAWFTVLLATDEQFCILEGEDMVFLLQNKMKFLGNMVYVTYIGPASSEEHCSYQIEIKKGRRRLTMESVPRSIDGIDEIPQDFLLIPVETYEEDGRLTFELSFRHVA

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
553	14	85			0.993533
557	85			14	0.993533
680	90			10	0.90298
780		83		16	0.999991
826		18		81	0.999994
878	87		12		0.992554
924	20			80	0.995493
973		25		75	0.996473
976		25		75	0.996473
978			75	25	0.996473
981		25		75	0.996473
982	75	25			0.996473
983			75	25	0.996473
987	75		25		0.996473
988	75	25			0.996473
989	75			25	0.996473
990			25	75	0.996473
1112	20	80			0.995493
1266		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain