SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5827

Length: 1083 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene5827 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	beta-glucosidase [Musa acuminata]	-	-	3.99931e-42	54%
FL-Next	tr=Beta-glucosidase; Pinus contorta (Shore pine) (Lodgepole pine).	-	-	0.0	37%
Sma3	Putative beta-glucosidase	-	-	1.688e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Prunasin beta-glucosidase.	EC:3.2.1.118	-	1.685e-13	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Cyanoamino acid metabolism	00460		1.685e-13	%

Source	Gene names
Sma3	AH1; At1g02850; At1g02850/F22D16.15; F22D16.15; GSVIVT00003779001; GSVIVT00003796001; GSVIVT00027995001; LI; Li; OJ1393_A07.1; OSJNBa0090H02.10; OSJNBa0090H02.13; Os05g0366600; Os09g0511700; Os09g0511900; OsI_04188; OsI_19671; OsI_32016; OsJ_03847; OsJ_17

Source	GOs	Term	Type	Identity
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	beta-glucosidase activity	GO:0008422	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	amygdalin beta-glucosidase activity	GO:0047668	Molecular Function	-
Sma3	prunasin beta-glucosidase activity	GO:0050224	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 1, beta-glucosidase	IPR017736	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G27830.1	BGLU10 beta glucosidase 10 chr4:13861794-13864489 REVERSE LENGTH=508	8.99999e-40	45%
RefSeq	Arabidopsis thaliana	NP_567787.1	beta glucosidase 10 [Arabidopsis thaliana]	1.0e-39	45%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9ZT64

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 279 aas, your sequence is shorter than subject: 190 - 513

Fln protein: MADRWALVCWLSIGFYFLTAPHIYRSESKSMITRHDFPSDFIFGAGTSAYQVRQCLLHLLPYLVLMTLPYTLYTQCVYN*W*ALPGYVAVQVEGAAALDGRKPSIWDTFTHAGNMPDKSTGDVAADQYHHYKEDVALMSEMGLDAYRFSISWSRLIPGIASLQMEGESSIPRGLNTTIILSTNLSTMVI*

Protein Length: 191

Fln nts: CTACCTATAGGTAGGGTTGAAGACACATTATTAGGGACCGAGGGCCGAGAAGAAATAAATAATGAGGCGAGGGTATCTAATAGCCAAGCGGAATCTGTTTTTGCAGGGCCGAGCAGATCATGGTTGAAGAAGTGCAGAGGCTTCTTTGTTTCTTCTTGATCCACAGCTCAATTATTGTTCTTTATTACTAGCCCTGCCTTTTAGTTTATCAGAGTTCCACGAAATATTTGGTATGTTATTATTAGC_-_ATGGCAGACAGATGGGCACTGGTCTGTTGGCTGTCAATTGGATTCTATTTTCTCACTGCTCCTCACATTTATCGATCGGAGTCTAAGTCTATGATAACCAGACATGACTTTCCTTCGGATTTTATTTTTGGCGCAGGCACTTCTGCCTACCAGGTCCGCCAATGCTTACTTCACTTACTTCCCTACCTTGTTCTCATGACTCTGCCTTATACGTTATATACACAATGTGTATATAATTAATGGTAAGCTTTGCCGGGCTATGTGGCTGTGCAGGTCGAAGGCGCTGCAGCATTAGATGGCCGAAAACCCAGCATTTGGGATACTTTCACCCACGCAGGTAACATGCCCGATAAAAGCACAGGAGATGTAGCAGCAGATCAATATCACCATTATAAAGAGGATGTTGCTCTCATGAGTGAAATGGGGTTAGACGCTTACAGATTTTCTATCTCCTGGTCTCGACTTATACCTGGAATTGCATCCCTGCAGATGGAAGGGGAGTCATCAATCCCAAGGGGGTTGAATACTACAATAATCTTATCAACGAACTTATCCACCATGGTAATATGATCATTGAGAAGAGCATCATGAACTCTAGCTTTCCAGCCTTTCATTAAAAGGCAAATAGTGCCAACGCTGTCATTGTATTGTGATTGATTGGTACAAATCTTGCAGGTATTGAGCCACATATCACATTGTATCACTTCGATCTGCCTCAAAGTTTGGAAGATGCTTATGAGGGATGGCTCAATCCCCAGATAGTGTAATGCTATATTATTTTTATATTCTTTTTGTAATGTTGGCAAATAACTTGATATAGGATGAATTAAGAATTAT

Fln Alignment:

Contig5827___WALVCWLSIGFYFLTAPHIYRSESKSMITRHDFPSDFIFGAGTSAYQVRQCLLHLLPYLVLMTLPYTLYTQCVYN*W*ALPGYVAVQVEGAAALDGRKPSIWDTFTHA-GNMPDKSTGDVAADQYHHYKEDVALMSEMGLDAYRFSISWSRLIP-GIASLQMEG
Q9ZT64______________WVLLFYSLLGFQVTTA----------RLDRNNFPSDFMFGTASSAYQY----------------------------------------EGAVREDGKGPSTWDALTHMPGRIKDSSNGDVAVDQYHRYMEDIELMASLGLDAYRFSISWSRILPEGRGEINMAG

SNPs (tot: 5)

Position	A %	C %	T %	Probability
1028	88	11		0.923564
1029		11	88	0.923564
1030		11	88	0.923564
1031		11	88	0.923564
1032	11	88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain