SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5826

Length: 2242 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene5826
GCAGCAAAGGGTGGCACTAAAGCGTTTTTTGGACGGGCAGAAATCACTCGAGAAAGCTATATTACATGTAAAAGGTTCTCTAAAACAGAATTGAGCGTGCTCGCCAATAGCAGAGGACGACCATGGCCAGGTGCGTGTGAAGGACCGACTGTAATGAACGAACGAGGAGGTTTTCATGTCCAGAGATAGTTAAAGCTTTAATGCTTCTTCCAAATATGATTGCAATAGTACGCAGACTGTACCATAATCCTAGTGTGGGCAACACATATTATGCAGATATACCAACCCTGAAGAAGGTGCTCGTTACTGAGCCAAAATTTCATGATCTTTTCAAATATAGTCACGAGGCTCGTTGGATCACGTCAGCATCTGAAATTAATATTACGAAACAATCAACATCATTTACATGTCAGGAAGATGGAAAACATACAAATACATCTCAAGATACAAAAGAATATGATATTGCCATTGTGGGAGGAGGAATGGTGGGTGCTGCAGTTGGTTGTAGTCTGGCAAGCTTGCCTTTGACAAAAGCATTAAGAGTAGCTATTATTGATAGCAATCCTACTTTAGGAGTGAGAAAAAGTTTACCTACAGATGATGTTCCTGATGTGAGGGTTAGTGCAATCACTCCATCAACAGTTTCCTTTTTCAAAGATGTTGGGGCATGGGAATATGTGCAAGCATGCAGACATGCACCATTTGATATAATGCAGGTGTGGGACTACACTGGTTGGGGCTATACTCGGTACAATGCTAGGGATGTAGGGAAGTCAGTGTTGGGATATGTGGTGGAGAACAAAGTACTTCACAATGCCCTTCTATCACGCCTACAGGATACAGGATTTGCTGATATAATAAGCCCAGTACAAGTAAAATCTGTGATGTTCAAACCAAATTCTCCATTACTAGCGAAATCGATGTTATCACAAGAGCCAAAGAATAATAAAGCATCCCCAACCTCTTATCAGGAGTGTAAAGGTTCATCTTATAGTCGTCAGCAATTGGCCAAGGTTGAACTCAATGATGGGAAATATCTCTACGCAAGATTGGTGGTTGGAGCTGATGGTGGGCGTTCCCAAGTGCGGTCAATGGCAGGGTTTCAAACCACTGGATGGGACTACAAGCAGCATGCTCTTATTTGCACTGTGGAGGTTGAAACTGAAAATCAAACAGCATGGCAGAGGTTTTTACCCAGTGGTCCTCTTGCTCTTCTTCCTATGGGGAAAAAATTCTTCAACATTGTGTGGTCAACTACTCCGGAAAAAGCATCAGAGCTTAAAGGAATGACTGAGGATGATTTTATTAAATCGGTAAACAATGCTTTAGTGCATGATTATGGACAACATCCTCAGTCACAATTTTCTGAAATTATCAACGGAAGATTGAAATGGCTTACTGGCGAGCTAGTGCCCTCAATATCAGAACCTTTCCAGACTCCACCCAGAATAATTGGCTTGTCAACAGCACGGATGTCGTTTCCTTTGTCATTAATGCATGCGAGTGATTATGCATCAAATCGCATTGTTCTTGTAGGTGATGCAGCTCATACTGTGCATCCATTAGCTGGGCAGGGAGTTAACTTAGGATTTGGTGATGCTGCTGCACTGACAAGAATTCTTAATGAAGGCGTTTTGACAGGTTCTGACATTGGGGAGATTTCATTGTTGAAGAAGTATGAGAGAGAAAGGAAGCTTGTAAATCTACCTATGATGGCAGTATTGGATGGATTTCAGAGAATCTTTTCAGCAGATTTTGGACCTGTGAATCTTCTGCGTGCTGCTGCATTTAATGGTGTTCAAATTTTGGGCCCTCTTAAGAAGCAGATAATTTCTTACGCTATGGGTGAGCAAAAGCTACCAATGTTTCCTTTTAATCACAACAGAGTTGTAGATTATTGACGAAGCTACATTTCCATAGATTAAGCAATACTTAAATATTGTAAATGTTGTGAAGTAATTTTATTATTATTTGTACAAATGCTTCATAAAAGTGAATAACGCTGGTGCTTTGTTTTTCTTGCGCTCCATAAAGGCTGTCTGAAGGTGGCACTATTACCAGAATAATAGTAAATTTCCATATGGCTGTTGTAAAGATCATGTTTCCATTACTTGTAGACCATTGCTATGGAATATTACTATGGAAGGTTATTTGTAAGATGCTTATGGACTCTTATGTCCATCAACCTGCAAAATGTGGATTTTAAAGATGAAATACACAGTTTAGATCCAATGCTTTTAGT

Ace file of the UniGene sp_v3.0_unigene5826 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Monoxygenase, putative n=1 Tax=Ricinus communis RepID=B9RWL0_RICCO	-	-	0.0	54%
FL-Next	tr=Monoxygenase, putative; Ricinus communis (Castor bean).	-	-	0.0	57%

Source	Gene names
Sma3	At3g24200; CHLREDRAFT_141676; COQ6; GSVIVT00001873001; LOC_Os03g62260; OSJNBa0042I09.9; Os03g0839100; OsI_14244; OsJ_13297; PHYPADRAFT_113386; POPTRDRAFT_1066008; RCOM_1020470;

Source	GOs	Term	Type	Identity
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen	GO:0016709	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	ubiquinone biosynthetic process	GO:0006744	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquinone biosynthesis monooxygenase, COQ6-type	IPR000689	-	-
Sma3	Monooxygenase, FAD-binding	IPR002938	-	-
Sma3	Aromatic-ring hydroxylase-like	IPR003042	-	-
Sma3	Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6	IPR010971	-	-
Sma3	Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site	IPR018168	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G24200.2	FAD/NAD(P)-binding oxidoreductase family protein chr3:8748095-8751166 REVERSE LENGTH=507	54%
RefSeq	Arabidopsis thaliana	NP_189062.3	ubiquinone biosynthesis monooxygenase Coq6 [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002299279.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9RWL0

Fln msg: your sequence is longer than subject: 567 - 515

Fln protein: MLLPNMIAIVRRLYHNPSVGNTYYADIPTLKKVLVTEPKFHDLFKYSHEARWITSASEINITKQSTSFTCQEDGKHTNTSQDTKEYDIAIVGGGMVGAAVGCSLASLPLTKALRVAIIDSNPTLGVRKSLPTDDVPDVRVSAITPSTVSFFKDVGAWEYVQACRHAPFDIMQVWDYTGWGYTRYNARDVGKSVLGYVVENKVLHNALLSRLQDTGFADIISPVQVKSVMFKPNSPLLAKSMLSQEPKNNKASPTSYQECKGSSYSRQQLAKVELNDGKYLYARLVVGADGGRSQVRSMAGFQTTGWDYKQHALICTVEVETENQTAWQRFLPSGPLALLPMGKKFFNIVWSTTPEKASELKGMTEDDFIKSVNNALVHDYGQHPQSQFSEIINGRLKWLTGELVPSISEPFQTPPRIIGLSTARMSFPLSLMHASDYASNRIVLVGDAAHTVHPLAGQGVNLGFGDAAALTRILNEGVLTGSDIGEISLLKKYERERKLVNLPMMAVLDGFQRIFSADFGPVNLLRAAAFNGVQILGPLKKQIISYAMGEQKLPMFPFNHNRVVDY*

Protein Length: 568

Fln nts: GCAGCAAAGGGTGGCACTAAAGCGTTTTTTGGACGGGCAGAAATCACTCGAGAAAGCTATATTACATGTAAAAGGTTCTCTAAAACAGAATTGAGCGTGCTCGCCAATAGCAGAGGACGACCATGGCCAGGTGCGTGTGAAGGACCGACTGTAATGAACGAACGAGGAGGTTTTCATGTCCAGAGATAGTTAAAGCTTTA_-_ATGCTTCTTCCAAATATGATTGCAATAGTACGCAGACTGTACCATAATCCTAGTGTGGGCAACACATATTATGCAGATATACCAACCCTGAAGAAGGTGCTCGTTACTGAGCCAAAATTTCATGATCTTTTCAAATATAGTCACGAGGCTCGTTGGATCACGTCAGCATCTGAAATTAATATTACGAAACAATCAACATCATTTACATGTCAGGAAGATGGAAAACATACAAATACATCTCAAGATACAAAAGAATATGATATTGCCATTGTGGGAGGAGGAATGGTGGGTGCTGCAGTTGGTTGTAGTCTGGCAAGCTTGCCTTTGACAAAAGCATTAAGAGTAGCTATTATTGATAGCAATCCTACTTTAGGAGTGAGAAAAAGTTTACCTACAGATGATGTTCCTGATGTGAGGGTTAGTGCAATCACTCCATCAACAGTTTCCTTTTTCAAAGATGTTGGGGCATGGGAATATGTGCAAGCATGCAGACATGCACCATTTGATATAATGCAGGTGTGGGACTACACTGGTTGGGGCTATACTCGGTACAATGCTAGGGATGTAGGGAAGTCAGTGTTGGGATATGTGGTGGAGAACAAAGTACTTCACAATGCCCTTCTATCACGCCTACAGGATACAGGATTTGCTGATATAATAAGCCCAGTACAAGTAAAATCTGTGATGTTCAAACCAAATTCTCCATTACTAGCGAAATCGATGTTATCACAAGAGCCAAAGAATAATAAAGCATCCCCAACCTCTTATCAGGAGTGTAAAGGTTCATCTTATAGTCGTCAGCAATTGGCCAAGGTTGAACTCAATGATGGGAAATATCTCTACGCAAGATTGGTGGTTGGAGCTGATGGTGGGCGTTCCCAAGTGCGGTCAATGGCAGGGTTTCAAACCACTGGATGGGACTACAAGCAGCATGCTCTTATTTGCACTGTGGAGGTTGAAACTGAAAATCAAACAGCATGGCAGAGGTTTTTACCCAGTGGTCCTCTTGCTCTTCTTCCTATGGGGAAAAAATTCTTCAACATTGTGTGGTCAACTACTCCGGAAAAAGCATCAGAGCTTAAAGGAATGACTGAGGATGATTTTATTAAATCGGTAAACAATGCTTTAGTGCATGATTATGGACAACATCCTCAGTCACAATTTTCTGAAATTATCAACGGAAGATTGAAATGGCTTACTGGCGAGCTAGTGCCCTCAATATCAGAACCTTTCCAGACTCCACCCAGAATAATTGGCTTGTCAACAGCACGGATGTCGTTTCCTTTGTCATTAATGCATGCGAGTGATTATGCATCAAATCGCATTGTTCTTGTAGGTGATGCAGCTCATACTGTGCATCCATTAGCTGGGCAGGGAGTTAACTTAGGATTTGGTGATGCTGCTGCACTGACAAGAATTCTTAATGAAGGCGTTTTGACAGGTTCTGACATTGGGGAGATTTCATTGTTGAAGAAGTATGAGAGAGAAAGGAAGCTTGTAAATCTACCTATGATGGCAGTATTGGATGGATTTCAGAGAATCTTTTCAGCAGATTTTGGACCTGTGAATCTTCTGCGTGCTGCTGCATTTAATGGTGTTCAAATTTTGGGCCCTCTTAAGAAGCAGATAATTTCTTACGCTATGGGTGAGCAAAAGCTACCAATGTTTCCTTTTAATCACAACAGAGTTGTAGATTATTGA___CGAAGCTACATTTCCATAGATTAAGCAATACTTAAATATTGTAAATGTTGTGAAGTAATTTTATTATTATTTGTACAAATGCTTCATAAAAGTGAATAACGCTGGTGCTTTGTTTTTCTTGCGCTCCATAAAGGCTGTCTGAAGGTGGCACTATTACCAGAATAATAGTAAATTTCCATATGGCTGTTGTAAAGATCATGTTTCCATTACTTGTAGACCATTGCTATGGAATATTACTATGGAAGGTTATTTGTAAGATGCTTATGGACTCTTATGTCCATCAACCTGCAAAATGTGGATTTTAAAGATGAAATACACAGTTTAGATCCAATGCTTTTAGT

Fln Alignment:

Contig5826___TSASEINITKQSTSFTCQEDGKHTNTSQDTKEYDXXXXXXXXXXXXXGCSLASLPLTKALRVAIIDSNPTLGVRKSLPTDDVPDVRVSAITPSTVSFFKDVGAWEYVQACRHAPFDIMQVWDYTGWGYTRYNARDVGKSVLGYVVENKVLHNALLSRLQDTGFADIISPVQVKSVMFKPNSPLLAKSMLSQEPKNNKASPTSYQECKGSSYSRQQLAKVELNDGKYLYARLVVGADGGRSQVRSMAGFQTTGWDYKQHALICTVEVETENQTAWQRFLPSGPLALLPMGKKFFNIVWSTTPEKASELKGMTEDDFIKSVNNALVHDYGQHPQSQFSEIINGRLKWLTGELVPSISEPFQTPPRIIGLSTARMSFPLSLMHASDYASNRIVLVGDAAHTVHPLAGQGVNLGFGDAAALTRILNEGVLTGSDIGEISLLKKYERERKLVNLPMMAVLDGFQRIFSADFGPVNLLRAAAFNGVQILGPLKKQIISYAMGEQKLPMF
B9RWL0______________SGAAAVN-TPSSHNNNNNEDKDKQSSTHTVQPYDIAIVGGGMVGMAFTCSLATTPLTKHLNVAIIDSNPALGSKFSINREDSPDPRVSTVTPATISFFKDIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYSARDANKDNLGCVVENKVLHSSLLSRVEDTDFQKTIYPSRLTTMS------------LHQSSSSTEVDSTSSAE---ALYIKGRLAKLELSAGSSLYAKLVVGADGGKSQVRELAGFKTTGWNYSQNAVICTVEHSVENRCAWQRFLPSGPIALLPIGDKFSNIVWTMNPKESSDCKSMNEDDFVKAVNHALDHGYGPHPKSSLFDGAN-MFTWLSGNSVVSANESFEVPPKVVKLASARLAFPLSLMHAKNYTSKRIALIGDAAHTVHPLAGQGVNLGFGDAFALSRIIAEGIAVGTDIGEVSLLKKYEAERKPANVTMMAILDGFQKAYSVDLGPLNILRAAAFHGAHHISPLKRSIISYASGEQRLPLF

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
500	66			33	0.997452
502	66			33	0.997452
651	90	10			0.90298
652	90	10			0.90298
655		90		10	0.90298
690	87	12			0.992554
691		12	87		0.992554
692		12		87	0.992554
718	87			12	0.992554
931	40		60		1.0
964	60	40			1.0
965	40		60		1.0
966		60		40	1.0
1014	25			75	0.996473
1015	25			75	0.996473
1017		75	25		0.996473
1018		75		25	0.996473
1143	20	80			0.995493
1144		80		20	0.995493
1145		80	20		0.995493
1247	11		88		0.923564
1249		88	11		0.923564
1303			16	83	0.994512
1328	33			66	1.0
1330	33		66		1.0
1331		66		33	1.0
1347		25		75	0.996473
1478	25	75			0.996473
1481		75		25	0.996473
1695	85	14			0.993533
1696		14	85		0.993533
1834	16	83			0.994512
1953	14	85			0.993533
1969	14		85		0.993533
1973	85			14	0.993533
2084		66		33	0.997452
2115		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain