SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5822

Length: 2527 nt

UniGene Fasta

>sp_v3.0_unigene5822
CCTTACTACTGTTCTGACCTACCCAACTCGAGTATGGAGAAATGGTACTGTAGGTACTACTGAAAATACGAGAAATCCCTTGAAAGTAACAACAGTTATGGGATCGAGTATCAGTACTGGTCCATTGGTGTGATGCCTGTTATGATTTCTCAGCATTCAATAATGGCGCTTGGGTCCCTTTGACTTCCATTTACAATTTCATCAATCAGGGACCCAGGCACTGATTGATGGGGTTTTACAGATGACTGTGTGAAAGGCTAAAGCATGGTGGTTTGGGCAGCGACTCGGTGATTCATCCCGTGAAACATGACAATGCAGTTGGGAGTTGCAGATACCAGAGCAAAAATGTACCAGGTTCATGTTCAAAGGCATGCTCTGTGCTTGCTTGCTGCAACCCTTGTGTGTTTTATTGTTCATTGCAGTGCTCTGACACCAGATGGTAAGGCATTGCTAGAGTTTAAAGCCCAACTCAACGGAACGAGGAATTTTCTCAGAAACTGGAACGAATCAGACGCGACCCCATGTGGCTGGGCTGGAGTAATATGCAATCCACTTACTAAACGAGTTACTACATTAAACCTGCCGTATCTGCTCCTCAGTGGAACTATATCTCCCAGCATTGGCAAATTGAACAGGCTGCACAGATTAGCTCTTCATGAGAACAGGTTGCATGGACACATCCCTCCAGAGATAGGCAAATGCACAGAGTTGAGAGCATTATACTTGCGGGATAACTACCTGGAAGGCGAAATTCCTGCAGAGCTGGGTAACCTGTCAAATCTTGTTATCTTAGATCTTTCAAGCAATTCATTGAAAGGAGTGATTCCACCATCTATTGGTGAATTAGGCATGCTGAGATTCTTAAATTTATCCACAAACTTCTTTGCGGGGGAGATCCCTAAAACTGGAGTGTTAGGAGGTTTCAGCAATCACTCATTTATAGGCAACCTGGACTTATGTGGCCTGCAAGTTGAAAAGCTTTGTAAGAATATGCTTGAGTTCCCTGCAATCGTACCCAAGCCCAATGATAATGACAACGTCACGGATGTTAAACAAGTAGAGCATGCTAGGACATTGGCACGGTACTTGAACGGACTCCTTATTGGAGCAATGGTTACAATGGGAGTCGCTCTTTGTGTGCTCCTTGTGTTCTTGTGGGTCTGCTTTTTATCTAAGAAAGGAGTCAAAGAGGAAAAGCAATGTAGACAGATAGAGCAACTCCCCCAGAACCAAACAGACACGCAGCTTGTTACATTCCATGGAGATTTACCATACACATCTGAGGATATTATAAAAAAGATAGAGATGCTTGGTGACACTGACATCATTGGTTCTGGGGGATTTGGAACCGTGTACAAGCTGGTGATGGACAATAACAGTTTATTTGCAGTGAAGAAAATTGAGAAGTCTGGTGTAGCATCCAATCGGATATTTGAGAGGGAGTTGGAGATTTTGGGAAGCATTAAACACAGGAATCTTGTTAATTTGCGTGGTTATTGTAAATCTCCATCAGCTAAAATGCTTATCTATGATTTCTTACTCATGGGAAGCTTAGATGAATTTCTCCATGACTGCAAACGACCTACTCCGCCTTTAAATTGGATGGCCCGATTGAAGATAGCACTTGGAGCAGGCCGAGGCCTGGCTTACTTGCATCATGACTGTGACCCTAGAATTGTTCACCGTGACATAAAGTCGAGCAATATACTCATTGATGAAAGGCTGGAGGCACATGTATCAGACTTTGGTCTTGCAAAGCTCTTGGAAGATGGCGAAACACATGTAACCACCATTGTTGCAGGCACACTCGGATACTTAGCTCCGGAGTACTTGCAAAGTGGGAGAGCAACAGAGAAATCAGATGTGTACAGCTTTGGAGTAGTATTGCTAGAGTTGCTTAGTGGAAAAAGACCAAACGATCCTTCCTTTATGAATGAGGGAGTGAATGTGGTAGGATGGGTTAACACACTCATGAGAGAGAGTAAATTGGAGGAGATTGTTGATCCAAGATGTGGTTGTGTACCACGGGATAGTATTGAGACAGTTCTTGAAATTGCAACCAGGTGCATAGCACCAAATCCTGAAGAACGGCCAACAATGAACAGAGTAGTGCAGATGCTGGAAGAAGAGACTATGCCACCCTACTCAAGGGAGTTCTACCCAGTAATGAACCCTGTAGTTCGAATGCTAGAAGAAGAGACTATGTCTACCTGCCATAGTGAGTTTTATGACTCATGTTCTGATGGAAAGGGAATTCAATTCGACTGCTAGATGTAGAGATAATTTAAGGTGATAATGCTTTCCATTTAATGTTATTGTTTTCATTGAGGATGTATTGTTTGGGCCTTTAGTAGTCCCCTCCTTTATTTTGCTTTACCCATTTGTATATAAACCATAATGAGATATAGTAATTTTTTATGACAGTAGAGCAGATCATCCGTGCCAAGCAAAACTAAATTGTATGTGAATTATAATCAGCAGTCAGCTGTATGAATGAAATTCAAATAGAAGATTCTACGATTTAAAG

Ace file of the UniGene sp_v3.0_unigene5822

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] dbj\|BAC42970.1\| putative receptor like protein kinase [Arabidopsis thaliana] gb\|ACN59402.1\| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gb\|AED97645.1\| leuci	-	-	0.0	58%
FL-Next	tr=Somatic embryogenesis receptor-like kinase 1; Pinus massoniana.	-	-	0.0	35%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	2.711e-07	-

Source	Gene names
Sma3	AT1G31420; AT1G72300; AT2G35620; AT5G62710; At1g72300; At2g35620; At5g62710; At5g62710/MQB2_10; ERL2b; GSVIVT00000078001; GSVIVT00007621001; GSVIVT00018889001; GSVIVT00027719001; GSVIVT00027943001; LOC_Os03g16010; LOC_Os12g44090; LRR-RLK; Os03g0266800; Os

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	peptide receptor activity	GO:0001653	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Interleukin-4/interleukin-13, conserved site	IPR018096	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G62710.1	Leucine-rich repeat protein kinase family protein chr5:25187438-25190325 FORWARD LENGTH=604	59%
RefSeq	Arabidopsis thaliana	NP_201077.2	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002318612.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5FY57

Fln msg:

Fln protein: MTMQLGVADTRAKMYQVHVQRHALCLLAATLVCFIVHCSALTPDGKALLEFKAQLNGTRNFLRNWNESDATPCGWAGVICNPLTKRVTTLNLPYLLLSGTISPSIGKLNRLHRLALHENRLHGHIPPEIGKCTELRALYLRDNYLEGEIPAELGNLSNLVILDLSSNSLKGVIPPSIGELGMLRFLNLSTNFFAGEIPKTGVLGGFSNHSFIGNLDLCGLQVEKLCKNMLEFPAIVPKPNDNDNVTDVKQVEHARTLARYLNGLLIGAMVTMGVALCVLLVFLWVCFLSKKGVKEEKQCRQIEQLPQNQTDTQLVTFHGDLPYTSEDIIKKIEMLGDTDIIGSGGFGTVYKLVMDNNSLFAVKKIEKSGVASNRIFERELEILGSIKHRNLVNLRGYCKSPSAKMLIYDFLLMGSLDEFLHDCKRPTPPLNWMARLKIALGAGRGLAYLHHDCDPRIVHRDIKSSNILIDERLEAHVSDFGLAKLLEDGETHVTTIVAGTLGYLAPEYLQSGRATEKSDVYSFGVVLLELLSGKRPNDPSFMNEGVNVVGWVNTLMRESKLEEIVDPRCGCVPRDSIETVLEIATRCIAPNPEERPTMNRVVQMLEEETMPPYSREFYPVMNPVVRMLEEETMSTCHSEFYDSCSDGKGIQFDC*

Protein Length: 656

Fln nts: CCTTACTACTGTTCTGACCTACCCAACTCGAGTATGGAGAAATGGTACTGTAGGTACTACTGAAAATACGAGAAATCCCTTGAAAGTAACAACAGTTATGGGATCGAGTATCAGTACTGGTCCATTGGTGTGATGCCTGTTATGATTTCTCAGCATTCAATAATGGCGCTTGGGTCCCTTTGACTTCCATTTACAATTTCATCAATCAGGGACCCAGGCACTGATTGATGGGGTTTTACAGATGACTGTGTGAAAGGCTAAAGCATGGTGGTTTGGGCAGCGACTCGGTGATTCATCCCGTGAAAC_-_ATGACAATGCAGTTGGGAGTTGCAGATACCAGAGCAAAAATGTACCAGGTTCATGTTCAAAGGCATGCTCTGTGCTTGCTTGCTGCAACCCTTGTGTGTTTTATTGTTCATTGCAGTGCTCTGACACCAGATGGTAAGGCATTGCTAGAGTTTAAAGCCCAACTCAACGGAACGAGGAATTTTCTCAGAAACTGGAACGAATCAGACGCGACCCCATGTGGCTGGGCTGGAGTAATATGCAATCCACTTACTAAACGAGTTACTACATTAAACCTGCCGTATCTGCTCCTCAGTGGAACTATATCTCCCAGCATTGGCAAATTGAACAGGCTGCACAGATTAGCTCTTCATGAGAACAGGTTGCATGGACACATCCCTCCAGAGATAGGCAAATGCACAGAGTTGAGAGCATTATACTTGCGGGATAACTACCTGGAAGGCGAAATTCCTGCAGAGCTGGGTAACCTGTCAAATCTTGTTATCTTAGATCTTTCAAGCAATTCATTGAAAGGAGTGATTCCACCATCTATTGGTGAATTAGGCATGCTGAGATTCTTAAATTTATCCACAAACTTCTTTGCGGGGGAGATCCCTAAAACTGGAGTGTTAGGAGGTTTCAGCAATCACTCATTTATAGGCAACCTGGACTTATGTGGCCTGCAAGTTGAAAAGCTTTGTAAGAATATGCTTGAGTTCCCTGCAATCGTACCCAAGCCCAATGATAATGACAACGTCACGGATGTTAAACAAGTAGAGCATGCTAGGACATTGGCACGGTACTTGAACGGACTCCTTATTGGAGCAATGGTTACAATGGGAGTCGCTCTTTGTGTGCTCCTTGTGTTCTTGTGGGTCTGCTTTTTATCTAAGAAAGGAGTCAAAGAGGAAAAGCAATGTAGACAGATAGAGCAACTCCCCCAGAACCAAACAGACACGCAGCTTGTTACATTCCATGGAGATTTACCATACACATCTGAGGATATTATAAAAAAGATAGAGATGCTTGGTGACACTGACATCATTGGTTCTGGGGGATTTGGAACCGTGTACAAGCTGGTGATGGACAATAACAGTTTATTTGCAGTGAAGAAAATTGAGAAGTCTGGTGTAGCATCCAATCGGATATTTGAGAGGGAGTTGGAGATTTTGGGAAGCATTAAACACAGGAATCTTGTTAATTTGCGTGGTTATTGTAAATCTCCATCAGCTAAAATGCTTATCTATGATTTCTTACTCATGGGAAGCTTAGATGAATTTCTCCATGACTGCAAACGACCTACTCCGCCTTTAAATTGGATGGCCCGATTGAAGATAGCACTTGGAGCAGGCCGAGGCCTGGCTTACTTGCATCATGACTGTGACCCTAGAATTGTTCACCGTGACATAAAGTCGAGCAATATACTCATTGATGAAAGGCTGGAGGCACATGTATCAGACTTTGGTCTTGCAAAGCTCTTGGAAGATGGCGAAACACATGTAACCACCATTGTTGCAGGCACACTCGGATACTTAGCTCCGGAGTACTTGCAAAGTGGGAGAGCAACAGAGAAATCAGATGTGTACAGCTTTGGAGTAGTATTGCTAGAGTTGCTTAGTGGAAAAAGACCAAACGATCCTTCCTTTATGAATGAGGGAGTGAATGTGGTAGGATGGGTTAACACACTCATGAGAGAGAGTAAATTGGAGGAGATTGTTGATCCAAGATGTGGTTGTGTACCACGGGATAGTATTGAGACAGTTCTTGAAATTGCAACCAGGTGCATAGCACCAAATCCTGAAGAACGGCCAACAATGAACAGAGTAGTGCAGATGCTGGAAGAAGAGACTATGCCACCCTACTCAAGGGAGTTCTACCCAGTAATGAACCCTGTAGTTCGAATGCTAGAAGAAGAGACTATGTCTACCTGCCATAGTGAGTTTTATGACTCATGTTCTGATGGAAAGGGAATTCAATTCGACTGCTAG___ATGTAGAGATAATTTAAGGTGATAATGCTTTCCATTTAATGTTATTGTTTTCATTGAGGATGTATTGTTTGGGCCTTTAGTAGTCCCCTCCTTTATTTTGCTTTACCCATTTGTATATAAACCATAATGAGATATAGTAATTTTTTATGACAGTAGAGCAGATCATCCGTGCCAAGCAAAACTAAATTGTATGTGAATTATAATCAGCAGTCAGCTGTATGAATGAAATTCAAATAGAAGATTCTACGATTTAAAG

Fln Alignment:

Contig5822___DGKALLEFKAQLNGTRNFLRNWNESDATPCGWAGVICNPLTKRVTTLNLPYLLLSGTISPSIGKLNRLHRLALHENRLHGHIPPEIGKCTELRALYLRDNYLEGEIPAELGNLSNLVILDLSSNSLKGVIPPSIGELGMLRFLNLSTNFFAGEIPKTGVLGGFSNHSFIGNLDLCGLQVEKLCKNMLEF---PAIVPKPNDNDNVTDVKQVEHARTLARYLNGLLIGAMVTMGXXXXXXXXXXXXXXXSKKGVKEEKQCRQIEQLPQNQTDTQLVTFHGDLPYTSEDIIKKIEMLGDTDIIGSGGFGTVYKLVMDNNSLFAVKKIEKSGVASNRI-FERELEILGSIKHRNLVNLRGYCKSPSAKMLIYDFLLMGSLDEFLHDCKRPTPPLNWMARLKIALGAGRGLAYLHHDCDPRIVHRDIKSSNILIDERLEAHVSDFGLAKLLEDGETHVTTIVAGTLGYLAPEYLQSGRATEKSDVYSFGVVLLELLSGKRPNDPSFM--NEGVNVVGWVNTLMRESKLEEIVDPRC-GCVPRDSIETVLEIATRCIAPNPEERPTMNRVVQMLEEETMPPYSREFYPVMNPVVRMLEEETMSTCHSEFYDSCSD
D5FY57______________EGDALHSLRSNLLVPNNVLQSWDPTLVNPCTWFHVTCNN-DNSVIRVDLGNAQLSGSLVPQLGQLNNLQYLELYSNNISGPIPSDLGNLTNLVSLDLYLNNFTGLIPESLGKLSRLRFLRLNNNSLVGRIPMSLTTITALQVLDLSNNNLTGEVPANGSFSLFTPISFGGNQYLCGPVAQKPCPGSPPFSPPPPFVPPP-------PVAGSNGARVQSSSSTGAIAGG-VAAGAALLFAAPAIGFAWWRRRKPQEHFFDVPAEEDPEVHLG-QLKRF------SLRELQVATDGFSNRNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERAQNDPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLIDWVKGLLKERRLDMLVDPDLKNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWEEWQKV--EVVRSQEVELVPHRNSEWIVDSTD

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1140		25		75	0.996473
1513	83			16	0.994512
1600		33		66	1.0
1632		85		14	0.993533
1918		76		23	1.0
2092	31		68		1.0
2218		21		78	1.0
2437		60		40	1.0
2438	60			40	1.0
2440		60	40		1.0
2441		60	40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain