SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5797

Length: 2736 nt

UniGene Fasta

>sp_v3.0_unigene5797
CGGGAATGGAAGGGCATTGAAAGCGGGTTTTATAAAGTATATGATACAATGGCGTCACTCATCTCTCCTATTCGCATATATCGCGTCGTTCCCAGCTGCATTTATTGGCAACCCTCGACCCGTTCCTCCGTTCTCTTCAACTCTCGGAGGTTGCTACCTTCATGTTCCTGCTCTGTGAAGTCTTCCACCACTATTTTCACTGCTGCTCGACCTTCAGCAGGCATCATATATAAAAGAACAGTTTCTTCAAATCTCCGTTGCGCGAGTACGAGTCTGAACGAGGTGCAAAGAATGGCCGGAGGAGTGGAGATATTGGAGGGAAACCCACTGCTACAAGAGGGACCCTTTCCTCGTTTCGATGCGGTGGAGCCGAAGCACGTCTGCCCTGGCATCAGGGCTGTCTTGCAACAACTGGAAAATGCTTTAGCTGAATTGGAAAGAACAGTACAACCAACTTGGTCAGGACTAGTTGAGCCTTTAGAGAAAATTGTGGATCGTCTCTCCGTTGTATGGGGAGTTGTAAACCATCTTAAATCTGTCAAAGATTCTGAAGATATTCGTTCAGCTATTGAGGAAGTGCAGCCTGAAAAAGTGACATTTCAACTTAGACTAGGACAAAGCAAACCTATCTTCAATGCATTCAAATCTATTCAGGAAGGTTCTATTTGGGAAACGCTGACTGAAGCCCAAAAACGGATAGTTGAAGTTGAGATTAAGGAAGCCACTCTTAATGGTGTTGCTTTGGAAGGGGATGCTAAAGTGCGCTTCAATGAAATCCAACAGGAGTTAGAAAAGCTTTCATTAAAATTTAATGAGAACGTTTTGGATGCAACAAAAAGCTTTGAGAAGTTAATAACTGACAAGAAAGATATTGAGGGATTACCACTGACTGCTCTTGGTCTCGCTGCTCAAACAGCAGCATCTAAGGGTTATGAAGGTGCAACTGCCGAGAATGGGCCATGGATTATTACATTAGATATTCCAAGCTACCTACCAGTTCAACAGCATGCACGTGATCGCAGTCTTCGTGAGGAGCTCTATCGTGCTTATGTTACTCGTGCCTCTACTGGAAAGTTAGATAACACTCCAGTTATTGATCAGATTTTGAGACTTCGATTAGAGAGAGCTAAATTGCTCGGATACAATAATTATGCAGAGGTAAGTATGGCCATGAAAATGGCAACTGTTGAGAAAGCTGAAGAACTCTTAGAAAATATTCGAAGTGCTTCATGGGATTCAGCTGTGCAAGACTTGGAGGATTTGAAGACCTTTGCCAAAGAGCAACATGCTGAAGAAGCTAATGATATGTGCCATTGGGATATTAGCTTTTGGAGTGAGCGGCTTCGCGAGGCTAAGTACGACATAAATGAGGAAGAGTTGCGACCGTTTTTCTCATTGCCAAAAGTAATGGAAAGCCTTTTCACCCTTGCAAAAATGCTTTTTGAAATTGATATTGAATCAGCGGATGGTCTCGCTCCAGTGTGGGACAAGGATGTAAGATTTTATGCAGTAAAAGACTTATCTGGAAGTCCAGTTGCGTATTTCTATTTTGATCCATACTCAAGGCCCTCAGAGAAGCGAGGTGGTGCATGGATGGATGAAGTTTTTGGCCGAAGTCGTGTGCTTGCGCAGGATGGTACTTCAGTCCGGCTACCCATAGCACACATGGTTTGCAACCAGACACCACCGGTTGGAGATAAACCAAGCTTAATGACTTTCCGTGAGGTTGAGACTGTATTCCATGAATTTGGTCATGCACTACAGCATATGCTTACCGAGCAAGATGAAGGTTTAGTAGCAGGCATTCGTGGTGTGGAGTGGGATGCAGTCGAACTTCCTTCTCAGTTTATGGAAAACTGGTGTTACCACAGAGACACACTTATGGGCATGGCTAAGCATTATGAAACTGGTGAGACACTCTCTGAAGAAATATATTTGAAGCTTGTAGCAGCAAGAACATTCAGGGCAGCTTCACAGAACTTACGTCAGATCCGATTTGCGAGTATTGATCTAGAACTGCATTCAAAGTATGTTCCTGGTGGTTCGGAGACTATTTTCGATGTTGATCAGAGGGTAGCTCAGAGGACACAAGTTGTTCCACCGTTGCAGGAAGATAGGTTCTTATGCAGTTTCCTTCATATCTTTGCAGATGCATATGCAGCAGGTTACTATAGCTACCAGTGGGCTGAGGTTCTGTCTGCAGATGCATTCTCAGCATTTGAAGAGGTTGGACTGGATAATGAGAAGGCTGTCAAGGAGACAGGAGAAAAGATTTAGGGATACTGTTCTTGCTCTGGGTGGTGGCCGGCCCCCATTGAAGGTTTTCATAGATTTCCGGGGTAGAGAGCCATCTACGGATCCACTCCTCAGGCATAATGGCTTGCTGCCAACAGCTGCAGCAGCTTAAAGAGGAATCTGTGAATGAAAAATGCAATTAGAATGGTATCCTTTCTGTATATGCAGCATTTCCATTTACGACTGTCATTTGCACGTCCTTGTTACATTTGTTATGTAGTTCGTCTTACAAAATGCTGCAGTGGTGTCTTGGAGAAACAAAGTACATGTTCTTTTGCGAATAAGTTGGCTGTCTTTTTATATAAAGAAAATGATAAAAAATTCACTGACAATTAAATATAAGCTGTAAAACAGGATTGAGGATAAAGCATGAAACTAGACATGTAAGAGCTACAATGTAGATTGTTGTAAACTTTACGAGAAACTAACGAAAAACACATT

Ace file of the UniGene sp_v3.0_unigene5797

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Oligopeptidase A, putative n=1 Tax=Ricinus communis RepID=B9SMK4_RICCO	-	-	0.0	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Oligopeptidase A	-	-	4.83e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:3.4.24.7-	-	6.195e-09	-

Source	Gene names
Sma3	At5g10540; At5g65620; CHLREDRAFT_187947; F12B17_110; GSVIVT00004136001; GSVIVT00004192001; GSVIVT00022112001; MICPUCDRAFT_35196; MICPUN_98128; OJ1124_D06.18; Os02g0830100; OsI_09551; OsJ_08986; PHATRDRAFT_8670; POPTRDRAFT_243706; POPTRDRAFT_589747; POPTRD

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	metalloendopeptidase activity	GO:0004222	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Peptidase M3A/M3B	IPR001567	-	-
Sma3		IPR017442	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G65620.1	Zincin-like metalloproteases family protein chr5:26221951-26225784 FORWARD LENGTH=791	70%
RefSeq	Arabidopsis thaliana	NP_569013.1	Zincin-like metalloproteases family protein [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002319998.1	predicted protein, partial [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADL7

Fln msg: Overlapping hits, possible frame ERROR between 2340 and 2267, your sequence is longer than subject: 787 - 413

Fln protein: MASLISPIRIYRVVPSCIYWQPSTRSSVLFNSRRLLPSCSCSVKSSTTIFTAARPSAGIIYKRTVSSNLRCASTSLNEVQRMAGGVEILEGNPLLQEGPFPRFDAVEPKHVCPGIRAVLQQLENALAELERTVQPTWSGLVEPLEKIVDRLSVVWGVVNHLKSVKDSEDIRSAIEEVQPEKVTFQLRLGQSKPIFNAFKSIQEGSIWETLTEAQKRIVEVEIKEATLNGVALEGDAKVRFNEIQQELEKLSLKFNENVLDATKSFEKLITDKKDIEGLPLTALGLAAQTAASKGYEGATAENGPWIITLDIPSYLPVQQHARDRSLREELYRAYVTRASTGKLDNTPVIDQILRLRLERAKLLGYNNYAEVSMAMKMATVEKAEELLENIRSASWDSAVQDLEDLKTFAKEQHAEEANDMCHWDISFWSERLREAKYDINEEELRPFFSLPKVMESLFTLAKMLFEIDIESADGLAPVWDKDVRFYAVKDLSGSPVAYFYFDPYSRPSEKRGGAWMDEVFGRSRVLAQDGTSVRLPIAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTEQDEGLVAGIRGVEWDAVELPSQFMENWCYHRDTLMGMAKHYETGETLSEEIYLKLVAARTFRAASQNLRQIRFASIDLELHSKYVPGGSETIFDVDQRVAQRTQVVPPLQEDRFLCSFLHIFADAYAAGYYSYQWAEVLSADAFSAFEEVGLDNEKAVKETGxxxxxxxxxxxxxxxxxxxxxxxxxxREPSTDPLLRHNGLLPTAAAA*

Protein Length: 788

Fln nts: CGGGAATGGAAGGGCATTGAAAGCGGGTTTTATAAAGTATATGATACA_-_ATGGCGTCACTCATCTCTCCTATTCGCATATATCGCGTCGTTCCCAGCTGCATTTATTGGCAACCCTCGACCCGTTCCTCCGTTCTCTTCAACTCTCGGAGGTTGCTACCTTCATGTTCCTGCTCTGTGAAGTCTTCCACCACTATTTTCACTGCTGCTCGACCTTCAGCAGGCATCATATATAAAAGAACAGTTTCTTCAAATCTCCGTTGCGCGAGTACGAGTCTGAACGAGGTGCAAAGAATGGCCGGAGGAGTGGAGATATTGGAGGGAAACCCACTGCTACAAGAGGGACCCTTTCCTCGTTTCGATGCGGTGGAGCCGAAGCACGTCTGCCCTGGCATCAGGGCTGTCTTGCAACAACTGGAAAATGCTTTAGCTGAATTGGAAAGAACAGTACAACCAACTTGGTCAGGACTAGTTGAGCCTTTAGAGAAAATTGTGGATCGTCTCTCCGTTGTATGGGGAGTTGTAAACCATCTTAAATCTGTCAAAGATTCTGAAGATATTCGTTCAGCTATTGAGGAAGTGCAGCCTGAAAAAGTGACATTTCAACTTAGACTAGGACAAAGCAAACCTATCTTCAATGCATTCAAATCTATTCAGGAAGGTTCTATTTGGGAAACGCTGACTGAAGCCCAAAAACGGATAGTTGAAGTTGAGATTAAGGAAGCCACTCTTAATGGTGTTGCTTTGGAAGGGGATGCTAAAGTGCGCTTCAATGAAATCCAACAGGAGTTAGAAAAGCTTTCATTAAAATTTAATGAGAACGTTTTGGATGCAACAAAAAGCTTTGAGAAGTTAATAACTGACAAGAAAGATATTGAGGGATTACCACTGACTGCTCTTGGTCTCGCTGCTCAAACAGCAGCATCTAAGGGTTATGAAGGTGCAACTGCCGAGAATGGGCCATGGATTATTACATTAGATATTCCAAGCTACCTACCAGTTCAACAGCATGCACGTGATCGCAGTCTTCGTGAGGAGCTCTATCGTGCTTATGTTACTCGTGCCTCTACTGGAAAGTTAGATAACACTCCAGTTATTGATCAGATTTTGAGACTTCGATTAGAGAGAGCTAAATTGCTCGGATACAATAATTATGCAGAGGTAAGTATGGCCATGAAAATGGCAACTGTTGAGAAAGCTGAAGAACTCTTAGAAAATATTCGAAGTGCTTCATGGGATTCAGCTGTGCAAGACTTGGAGGATTTGAAGACCTTTGCCAAAGAGCAACATGCTGAAGAAGCTAATGATATGTGCCATTGGGATATTAGCTTTTGGAGTGAGCGGCTTCGCGAGGCTAAGTACGACATAAATGAGGAAGAGTTGCGACCGTTTTTCTCATTGCCAAAAGTAATGGAAAGCCTTTTCACCCTTGCAAAAATGCTTTTTGAAATTGATATTGAATCAGCGGATGGTCTCGCTCCAGTGTGGGACAAGGATGTAAGATTTTATGCAGTAAAAGACTTATCTGGAAGTCCAGTTGCGTATTTCTATTTTGATCCATACTCAAGGCCCTCAGAGAAGCGAGGTGGTGCATGGATGGATGAAGTTTTTGGCCGAAGTCGTGTGCTTGCGCAGGATGGTACTTCAGTCCGGCTACCCATAGCACACATGGTTTGCAACCAGACACCACCGGTTGGAGATAAACCAAGCTTAATGACTTTCCGTGAGGTTGAGACTGTATTCCATGAATTTGGTCATGCACTACAGCATATGCTTACCGAGCAAGATGAAGGTTTAGTAGCAGGCATTCGTGGTGTGGAGTGGGATGCAGTCGAACTTCCTTCTCAGTTTATGGAAAACTGGTGTTACCACAGAGACACACTTATGGGCATGGCTAAGCATTATGAAACTGGTGAGACACTCTCTGAAGAAATATATTTGAAGCTTGTAGCAGCAAGAACATTCAGGGCAGCTTCACAGAACTTACGTCAGATCCGATTTGCGAGTATTGATCTAGAACTGCATTCAAAGTATGTTCCTGGTGGTTCGGAGACTATTTTCGATGTTGATCAGAGGGTAGCTCAGAGGACACAAGTTGTTCCACCGTTGCAGGAAGATAGGTTCTTATGCAGTTTCCTTCATATCTTTGCAGATGCATATGCAGCAGGTTACTATAGCTACCAGTGGGCTGAGGTTCTGTCTGCAGATGCATTCTCAGCATTTGAAGAGGTTGGACTGGATAATGAGAAGGCTGTCAAGGAGACAGGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGAGAGCCATCTACGGATCCACTCCTCAGGCATAATGGCTTGCTGCCAACAGCTGCAGCAGCTTAA___AGAGGAATCTGTGAATGAAAAATGCAATTAGAATGGTATCCTTTCTGTATATGCAGCATTTCCATTTACGACTGTCATTTGCACGTCCTTGTTACATTTGTTATGTAGTTCGTCTTACAAAATGCTGCAGTGGTGTCTTGGAGAAACAAAGTACATGTTCTTTTGCGAATAAGTTGGCTGTCTTTTTATATAAAGAAAATGATAAAAAATTCACTGACAATTAAATATAAGCTGTAAAACAGGATTGAGGATAAAGCATGAAACTAGACATGTAAGAGCTACAATGTAGATTGTTGTAAACTTTACGAGAAACTAACGAAAAACACATT

Fln Alignment:

Contig5797___MAMKMATVEKAEELLENIRSASWDSAVQDLEDLKTFAKEQHAEEANDMCHWDISFWSERLREAKYDINEEELRPFFSLPKVMESLFTLAKMLFEIDIESADGLAPVWDKDVRFYAVKDLSGSPVAYFYFDPYSRPSEKRGGAWMDEVFGRSRVLAQDGTSVRLPIAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTEQDEGLVAGIRGVEWDAVELPSQFMENWCYHRDTLMGMAKHYETGETLSEEIYLKLVAARTFRAASQNLRQIRFASIDLELHSKYVPGGSETIFDVDQRVAQRTQVVPPLQEDRFLCSFLHIFADAYAAGYYSYQWAEVLSADAFSAFEEVGLDNEKAVKETGxxxxxxxxxxxxxxxxxxxxxxxxxREPSTDPLLRHNGLLPTAAAA
D5ADL7______________MAMKMATVEKAEELLEKIRSASWDSAVQDLEDLKIFAKEQHAEEANDMCHWDISFWSERLREAKYDINEEELRPFFSLPKVMESLFALAKTLFEIDIEPVDGLAPVWNKDVRFYAVKDLSGSPVAYFYFDPYSRPSEKRGGAWMDEVFGRSRVLAQDGSSVRLPIAHMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKQDEGLVAGIRGVEWDAVELPSQFMENWCYHRDTLMGIAKHYKTGETLSEEIYLKLVAARTFRAASQNLRQIRFASSDLELHSKYVPGGSETIFDVDQRLAQRTQVVPPLQEDRFLCSFLHIFAGGYGAGYYSYKWAEVLSADAFSAFEDAGLENEKAVKETGxxxxxxxxxxxxxxxxxxxxxxxxxREPSTDPLLRHNGLLPTTAAS

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
123		80		20	0.995493
131	16			83	0.994512
132		83		16	0.994512
133		83	16		0.994512
134	33		66		1.0
135			16	83	0.994512
158		83		16	0.994512
164		16		83	0.994512
213	16		83		0.994512
346	85			14	0.993533
360			25	75	1.0
426	11	88			0.923564
509	42		57		1.0
616	83			16	0.994512
738			75	25	0.996473
803	20			80	0.995493
848	20		80		0.995493
850			80	20	0.995493
851	80		20		0.995493
852	80			20	0.995493
872			71	28	1.0
1113	27		72		1.0
1162		10	90		0.90298
1163	10		90		0.90298
1165	90			10	0.90298
1272		57		42	1.0
1345			25	75	0.996473
2146	11			88	0.923564
2148	18			63	0.999997
2152		90	10		0.90298
2153	90		10		0.90298
2155			80	20	0.999996
2182	75			25	0.996473
2204		25		75	0.996473
2279			40	60	1.0
2280			40	60	1.0
2389	14	85			0.993533
2393		85	14		0.993533
2394	85		14		0.993533
2401	12		87		0.992554
2402		87		12	0.992554
2403	87		12		0.992554
2405		87	12		0.992554
2528			10	90	0.90298
2531	90			10	0.90298
2532	90			10	0.90298
2533	90		10		0.90298
2534	90		10		0.90298
2538	10			90	0.90298
2539		10	90		0.90298
2601		66		33	0.997452
2621	80			20	0.995493
2623	20			80	0.995493
2637	25		75		0.996473
2691		73		21	1.0
2728	66			33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain