SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5789

Length: 3543 nt

UniGene Fasta

>sp_v3.0_unigene5789
TCAATAGTTTATCTCGTTGTTCCTTTTAAGTTCTGGAGGAAAGTCCATAAGCTTGTACCTTATGCTCTTTGTTTTTATTGCTAAAGAGTTTCCCAAAAGGCTTCGTCCAAAAGAGCCCGGGTACGAACCCCAGCCGTCACTTCGCATTTTGATTTGCGAGTAAGTTAATACTTTCACGTCGTGACCTTGGCTGTCACTCAATTCTCGGAGTTCAGATCGGCACCTTCAACGGTATTAATTGCCCGTCTGCAAATCATCTTCAAGGCGAAATCTCGGCGCCCTGGCGTTCCGCAAGATTCCAGGTGCCAGGTTTGATGCCCGAAACCCTTATCTGCAAGATATTCCAAGTCTCCTTTAGAAGCTCTGGAAATGATGACGAAATCAGGTTCCGGTAATTTTTTCGTAAAGCTGAGGCAGATGACGGTGAAATCGTGTCGTTCGGTCTAGGATTAGTCGGCAAATTAACAAGCGGGCAAAGTATTGTCACTTGGAACATGTTTCTTGGTTGCGATTTTATAAATAGAGGGAAAAGCTCGTTAGACTTCTGAGAAAATTAGTTGAAGGAATATCTGAATAAATAAATGCGTTTAGTTGCTCATAAATTTGGAACAGTTTGGAGTGCGGGCTTAAGCGATACGTTATATTGTAGATCCTGTCAAAACTTTGCCGATTTGCCAAATTCGTTAGAATCAAGACGCTTGATAGAGATTTCTGCCATAGTTCTTTAAAATGTCGAAAAATGTCTATGAAATCGACAAAAACCTCTAGAATTGGCGGGTGGTAACGGCGGTTACAGTGAATTGGGGGATATTTTGTCAGCAGGTACGTCGGATAGCCGGGAAATTTGTGGAATTATTTTCTGTCAAATTATTTGAAATGCAGGGATAATCACGGTTGAAACAGGACACTATTAGGTTTTTCAAAAGCATTTTAGATGCCCTCGATGATGCTGTGAAATTGAGTAATTTGGCTGAAATTTCGGTCAAAACTCTATGGATTGTTGGAAACTACCTGTCAAATCAGGCACAGATTTTTGAACTGATAGAAACGTGGCAATAAAGTGAACTTGGGGATATTTACCCTGAAAGTCTAAAGGTTCAGCCGAACAACTTGATGAATCTTCCGATCAAAATTGTGCAAGAATTACCCTAGTGTGAAACGGAAAGGAATTCATGCGATGGTAGATTGTCTGATGGAGCATTGCTGCAATATTCAGTCAGTTCATTGATGGCACAATCTTAAAAAGTTCGCTTTCAATCGAGGACAAGATTTCCATTGTCCTTGGTGAATGGTTTGGTGTTAGCGGAATAAATGGCTTCCATATTTTTCATAATAGTAGCATTTCCATGCACTATTATAGCGATTTCATTGGCAATATGGCATATTTACAGACATCTCTTGAACTACACAGAGCCAACATATCAGCGATATATTGTTCGCATTATCTTCATGGTGCCGGTATATGCGACAATGTCATTCATGTCTCTGGTGATGGGCGATAAATCAATTTACTTTAATTCGATTCGGGAAATATATGAGGCATGGGTCATATATAATTTTCTTTCTCTATGTCTAGCATGGGTGGGTGGTCCAGGTGCTGTAGTCACAAGCTTAAGTGGCCGAGTATTGAAGCCATCATGGAATCTGATGACATGTTGTCTTCCTCCTATTTCTCTTGATGGGCGTTTCATTCGACGTTGTAAGCAGGGTGCATTGCAGTTTGTCATTCTGAAGCCCGTACTTGTTGCAATTACATTTATTTTGTATGCAAAAGGAAAGTACGAGGATGGAAATTTCAGTGCCAAGCAAGCCTACCTATATGTGACTATCATTTACACTATATCATACTCTTTGGCATTGTATGCATTGCTTTTATTTTATGTGGCCTGCAGAGATCTGCTTCGGCCATTCAATCCAGTTCCAAAGTTTGTAATCATCAAATCTGTTGTCTTCCTGACATATTGGCAGGGAGTGCTAGTTTTTCTTGCAGCAAAGTCTGGCATGATTAAAAGTGCAGAAGATGCTGCTGATATTCAGAACTTTGTTATTTGTCTCGAGATGGCTATTGCTGCAGTGGGACATTTGTATGCATTCCCTTATAAAGTGTATGCTGAAGCAAACATAGGTGCATCTAGTGGTTTAACTGGGAGCCTTGGCCATGCTTTGAAGTTCAATGATTTTTACCATGACACAGTACATCAGTTTGCCCCAACGTATCATGATTATATCCTTTACAACAATGAAGGTGAAGAAGGGACAAGGAAATATCGTGCACGCACTTTTGTGCCAACTGGCCAGGAGATGGACACTGTACGGAAGCATAAACAAATGTTTGGGACTGGCAGAACAGATTATCCATATGCGATAGGGGTTTCTTCTTCAGATGGTGCAAGCCCTCGTATTGCGGTGGATAGGCAGAAGACTGTCAAGGATCCGGAATCCATGAAGTCCTCTCTGCTTCTTGATCCTACAAATGTTTTTGGCCAGCCTTATGATGTGTCACATTTGGAGTCTGGTCAACCAACATTAGCTGGAAAAGGTTTGTCTGATTTTAACCCAAGAAGGGCATGACCGAATTCCAGAAGATATTATTCTGGTTAAGCACTTACTGATCATGTAGAATTCGTTTGAGGCATGTCCAACTACAAAATTGCTTTAGGGCTTTTATGTGATGGTGAGGAGTTAGTTGTTACTAATTCACATCCACTTGTTGCTTGCAATGGGTTTTTGAGTTTCTTATGGTGATACATACAGTTGATTTCATGTGTATTGCTTCTATGTTTCACTTCCATTCTTCTGCGAGGTAGCTCAAAAGTAATTCATTTCTAGCATTTAGTCCAAAATTCTTTCCTGAAATGGTTTATTCACAAATGAAGTACAGGATCAGAGGTTTCTTCTCATGGTACATAACTGAATATGAGGGCTTTTGAACATTTGTTTGTATGTCTTGTACAACAAAAGTACTGTTTATGCTCAATATGGTTGCTAATACATTTTGTGTTGGGGACCTTGTCTCATGCTACTCCCTGAAGAGGACCCCTGCTCTTTTTGTCACTTCCCTGGAAAAAGGAAAGCGATTTCAAGCCTTCTAATCTTTCTCTTTTGCAAATGGTTCATGCCAAAACTGGATTGGTGTCGCAGAGAGACCATCCAAAGAGTGCCTACTATCAAAAGGTTGTAGTCAAAATCGCCCAATGAAACTTGGAAGAGAGTATGCTGTGAAACACTTTCATGATAATTTCTGAATCACTATTGGATTTGTGGTCAGCTTTCCACTGTGACGTTCTTGGTGATAGCAGTTATATGTCCTTTATGTTGGGAAAGGTACCATTGGAGAGTTGAAGGTCACTTTTGAAAAGACATTGTCGAGGATAGAGGTCATTAATATCATGTTCTGAAAAAATAGAGCCATGGGTAAAGACAATGATGAAATAATCAAACACATGCAGAATGAAGTTAAAGTAGGAAGGCCACCATGTAGCCATGAATTTGTATTATGAGGGGGGGTTATGATTGGATTGAAATTGTTTATTGGTTTGTTGA

Ace file of the UniGene sp_v3.0_unigene5789

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF300 domain containing protein	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	31%
Sma3	Chromosome undetermined scaffold_341, whole genome shotgun sequence	-	-	6.545e-08	-

Source	Gene names
Sma3	AT5G26740; At3g05940; At5g26734; At5g26740; CHLREDRAFT_78039; F10A16.24; F21E10.13; F2O10.10; GSVIVT00011821001; GSVIVT00011825001; LOC_Os03g61210; MICPUCDRAFT_15117; MICPUN_100502; MtrDRAFT_AC149038g17v2; OJ1058_C08.2; OJ1341_A08.136; OSJNBa0010E04.5; OS

Source	GOs	Term	Type	e value	Identity
Sma3	kinase activity	GO:0016301	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Gnk2-homologous domain	IPR002902	-	0.0	-
Sma3	Organic solute transporter Ost-alpha	IPR005178	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G05940.1	Protein of unknown function (DUF300) chr3:1777592-1779648 REVERSE LENGTH=422	70%
RefSeq	Arabidopsis thaliana	NP_187245.2	uncharacterized protein [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002329979.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNY2

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is longer than subject: 420 - 295

Fln protein: MASIFFIIVAFPCTIIAISLAIWHIYRHLLNYTEPTYQRYIVRIIFMVPVYATMSFMSLVMGDKSIYFNSIREIYEAWVIYNFLSLCLAWVGGPGAVVTSLSGRVLKPSWNLMTCCLPPISLDGRFIRRCKQGALQFVILKPVLVAITFILYAKGKYEDGNFSAKQAYLYVTIIYTISYSLALYALLLFYVACRDLLRPFNPVPKFVIIKSVVFLTYWQGVLVFLAAKSGMIKSAEDAADIQNFVICLEMAIAAVGHLYAFPYKVYAEANIGASSGLTGSLGHALKFNDFYHDTVHQFAPTYHDYILYNNEGEEGTRKYRARTFVPTGQEMDTVRKHKQMFGTGRTDYPYAIGVSSSDGASPRIAVDRQKTVKDPESMKSSLLLDPTNVFGQPYDVSHLESGQPTLAGKGLSDFNPRRA*

Protein Length: 421

Fln nts: TCAATAGTTTATCTCGTTGTTCCTTTTAAGTTCTGGAGGAAAGTCCATAAGCTTGTACCTTATGCTCTTTGTTTTTATTGCTAAAGAGTTTCCCAAAAGGCTTCGTCCAAAAGAGCCCGGGTACGAACCCCAGCCGTCACTTCGCATTTTGATTTGCGAGTAAGTTAATACTTTCACGTCGTGACCTTGGCTGTCACTCAATTCTCGGAGTTCAGATCGGCACCTTCAACGGTATTAATTGCCCGTCTGCAAATCATCTTCAAGGCGAAATCTCGGCGCCCTGGCGTTCCGCAAGATTCCAGGTGCCAGGTTTGATGCCCGAAACCCTTATCTGCAAGATATTCCAAGTCTCCTTTAGAAGCTCTGGAAATGATGACGAAATCAGGTTCCGGTAATTTTTTCGTAAAGCTGAGGCAGATGACGGTGAAATCGTGTCGTTCGGTCTAGGATTAGTCGGCAAATTAACAAGCGGGCAAAGTATTGTCACTTGGAACATGTTTCTTGGTTGCGATTTTATAAATAGAGGGAAAAGCTCGTTAGACTTCTGAGAAAATTAGTTGAAGGAATATCTGAATAAATAAATGCGTTTAGTTGCTCATAAATTTGGAACAGTTTGGAGTGCGGGCTTAAGCGATACGTTATATTGTAGATCCTGTCAAAACTTTGCCGATTTGCCAAATTCGTTAGAATCAAGACGCTTGATAGAGATTTCTGCCATAGTTCTTTAAAATGTCGAAAAATGTCTATGAAATCGACAAAAACCTCTAGAATTGGCGGGTGGTAACGGCGGTTACAGTGAATTGGGGGATATTTTGTCAGCAGGTACGTCGGATAGCCGGGAAATTTGTGGAATTATTTTCTGTCAAATTATTTGAAATGCAGGGATAATCACGGTTGAAACAGGACACTATTAGGTTTTTCAAAAGCATTTTAGATGCCCTCGATGATGCTGTGAAATTGAGTAATTTGGCTGAAATTTCGGTCAAAACTCTATGGATTGTTGGAAACTACCTGTCAAATCAGGCACAGATTTTTGAACTGATAGAAACGTGGCAATAAAGTGAACTTGGGGATATTTACCCTGAAAGTCTAAAGGTTCAGCCGAACAACTTGATGAATCTTCCGATCAAAATTGTGCAAGAATTACCCTAGTGTGAAACGGAAAGGAATTCATGCGATGGTAGATTGTCTGATGGAGCATTGCTGCAATATTCAGTCAGTTCATTGATGGCACAATCTTAAAAAGTTCGCTTTCAATCGAGGACAAGATTTCCATTGTCCTTGGTGAATGGTTTGGTGTTAGCGGAATAA_-_ATGGCTTCCATATTTTTCATAATAGTAGCATTTCCATGCACTATTATAGCGATTTCATTGGCAATATGGCATATTTACAGACATCTCTTGAACTACACAGAGCCAACATATCAGCGATATATTGTTCGCATTATCTTCATGGTGCCGGTATATGCGACAATGTCATTCATGTCTCTGGTGATGGGCGATAAATCAATTTACTTTAATTCGATTCGGGAAATATATGAGGCATGGGTCATATATAATTTTCTTTCTCTATGTCTAGCATGGGTGGGTGGTCCAGGTGCTGTAGTCACAAGCTTAAGTGGCCGAGTATTGAAGCCATCATGGAATCTGATGACATGTTGTCTTCCTCCTATTTCTCTTGATGGGCGTTTCATTCGACGTTGTAAGCAGGGTGCATTGCAGTTTGTCATTCTGAAGCCCGTACTTGTTGCAATTACATTTATTTTGTATGCAAAAGGAAAGTACGAGGATGGAAATTTCAGTGCCAAGCAAGCCTACCTATATGTGACTATCATTTACACTATATCATACTCTTTGGCATTGTATGCATTGCTTTTATTTTATGTGGCCTGCAGAGATCTGCTTCGGCCATTCAATCCAGTTCCAAAGTTTGTAATCATCAAATCTGTTGTCTTCCTGACATATTGGCAGGGAGTGCTAGTTTTTCTTGCAGCAAAGTCTGGCATGATTAAAAGTGCAGAAGATGCTGCTGATATTCAGAACTTTGTTATTTGTCTCGAGATGGCTATTGCTGCAGTGGGACATTTGTATGCATTCCCTTATAAAGTGTATGCTGAAGCAAACATAGGTGCATCTAGTGGTTTAACTGGGAGCCTTGGCCATGCTTTGAAGTTCAATGATTTTTACCATGACACAGTACATCAGTTTGCCCCAACGTATCATGATTATATCCTTTACAACAATGAAGGTGAAGAAGGGACAAGGAAATATCGTGCACGCACTTTTGTGCCAACTGGCCAGGAGATGGACACTGTACGGAAGCATAAACAAATGTTTGGGACTGGCAGAACAGATTATCCATATGCGATAGGGGTTTCTTCTTCAGATGGTGCAAGCCCTCGTATTGCGGTGGATAGGCAGAAGACTGTCAAGGATCCGGAATCCATGAAGTCCTCTCTGCTTCTTGATCCTACAAATGTTTTTGGCCAGCCTTATGATGTGTCACATTTGGAGTCTGGTCAACCAACATTAGCTGGAAAAGGTTTGTCTGATTTTAACCCAAGAAGGGCATGACCGAATTCCAGAAGATATTATTCTGGTTAAGCACTTACTGATCATGTAGAATTCGTTTGAGGCATGTCCAACTACAAAATTGCTTTAGGGCTTTTATGTGATGGTGAGGAGTTAGTTGTTACTAATTCACATCCACTTGTTGCTTGCAATGGGTTTTTGAGTTTCTTATGGTGATACATACAGTTGATTTCATGTGTATTGCTTCTATGTTTCACTTCCATTCTTCTGCGAGGTAGCTCAAAAGTAATTCATTTCTAGCATTTAGTCCAAAATTCTTTCCTGAAATGGTTTATTCACAAATGAAGTACAGGATCAGAGGTTTCTTCTCATGGTACATAACTGAATATGAGGGCTTTTGAACATTTGTTTGTATGTCTTGTACAACAAAAGTACTGTTTATGCTCAATATGGTTGCTAATACATTTTGTGTTGGGGACCTTGTCTCATGCTACTCCCTGAAGAGGACCCCTGCTCTTTTTGTCACTTCCCTGGAAAAAGGAAAGCGATTTCAAGCCTTCTAATCTTTCTCTTTTGCAAATGGTTCATGCCAAAACTGGATTGGTGTCGCAGAGAGACCATCCAAAGAGTGCCTACTATCAAAAGGTTGTAGTCAAAATCGCCCAATGAAACTTGGAAGAGAGTATGCTGTGAAACACTTTCATGATAATTTCTGAATCACTATTGGATTTGTGGTCAGCTTTCCACTGTGACGTTCTTGGTGATAGCAGTTATATGTCCTTTATGTTGGGAAAGGTACCATTGGAGAGTTGAAGGTCACTTTTGAAAAGACATTGTCGAGGATAGAGGTCATTAATATCATGTTCTGAAAAAATAGAGCCATGGGTAAAGACAATGATGAAATAATCAAACACATGCAGAATGAAGTTAAAGTAGGAAGGCCACCATGTAGCCATGAATTTGTATTATGAGGGGGGGTTATGATTGGATTGAAATTGTTTATTGGTTTGTTGA

Fln Alignment:

Contig5789___CTIIAISLAIWHIYRHLLNYTEPTYQRYIVRIIFMVPVYATMSFMSLV--MGDKS--IYFNSIREIYEAWVIYNFLSLCLAWVG---GPGAVVTSLSGRVLKPSWNLMTCCLPPISLDGRFIRRCKQGALQFVILKPVLVAITFILYAKGKYEDGNFSAKQAYLYVTIIYTIXXXXXXXXXXXFYVACRDLLRPFNPVPKFVIIKSVVFLTYWQGVLVFLAAKSGMIKSAEDAADI-------QNFVICLEMAIAAVGHLYAFPYKVY
A9NNY2______________CTMLTMHFTVQLLSQHLFYWKKPKEQKAIIIIILMAPIYSIDAFAGLVDIEGSKTYFMFLDSIKECYEGLVIAKFLALLYSYLNISISQNIVPDGIKGREIHHSFPITLFQPKTVHLDHHTLKLIKYWTWQFAIIRPVLSILMIFFQLLGLY-----TGWISWVF-SIILNISVSLALYSLVLFYHVFAKELAPHKPLSKFLCVKGIVFFCFWQGIVLGILASAGIIRSHHFWLDVEHIEEALQNVLICLEMVIFSVMQQYA--YHVY

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
1871	16			83	0.994512
1872		16	83		0.994512
1873	16	83			0.994512
1886	20			80	0.995493
1887		14	85		0.993533
1888	14		85		0.993533
1889		85		14	0.993533
1890		85		14	0.993533
1917		12		87	0.992554
1991		87		12	0.992554
1995	87		12		0.992554
2088	14		85		0.993533
2089		14		85	0.993533
2406			10	90	0.90298
2543	11		88		0.923564
3005		25		75	0.996473
3008		25		75	0.996473
3010			75	25	0.996473
3019			25	75	0.996473
3022		75	25		0.996473
3176	60		40		1.0
3296			60	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain